BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61230.1
Length=1518
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907331 jgi|Araly1|907331|Al_scaffold_0002_412 673 0.0
Ahg338247 jgi|Araly1|338247|fgenesh1_pg.C_scaffold_2000346 536 2e-151
Ahg907330 jgi|Araly1|907330|Al_scaffold_0002_411 108 1e-22
> Ahg907331 jgi|Araly1|907331|Al_scaffold_0002_412
Length=1767
Score = 673 bits (364), Expect = 0.0
Identities = 853/1082 (79%), Gaps = 61/1082 (6%)
Strand=Plus/Plus
Query 463 CAAGCACTTCAATTCAAAACTAACATAAAGACTTCTGAGCTGCTAGGATATGAAAAGGGT 522
||| |||||||||| ||||||||| | | |||||| ||| ||||||||||||||||||||
Sbjct 709 CAATCACTTCAATTTAAAACTAACTTCAGGACTTCGGAGATGCTAGGATATGAAAAGGGT 768
Query 523 AAGAAGTTTTCACTTGCAGACAAGGG-AAAGAAAATTATTGGGTTTCATGGATATGCTGA 581
|||||||||| ||||| ||||||||| ||| |||||| |||| |||||||||||||||||
Sbjct 769 AAGAAGTTTTTACTTGGAGACAAGGGGAAA-AAAATTGTTGGCTTTCATGGATATGCTGA 827
Query 582 GAAGAACCTC-ATTTCTCTTGGAGCATATTTCACAACAGTTTCTGTTA-CTAAATCGGTA 639
||| | ||| | | |||||||||||||||||||||| ||| | ||| | ||||| | |
Sbjct 828 CAAGTATCTCTACT-CTCTTGGAGCATATTTCACAACGGTTCCCATTAGC-AAATCAGAA 885
Query 640 TGTCACGGTAGTAA-G-ATA-ATCGAGTCTTGGGATGATGGTGTTTTTGACG-GCATAAG 695
|||| |||| ||| | | || | |||||||||||||||||||| || | |||||||
Sbjct 886 TGTCGCGGTGGTACTGGAGGCAT--A-TCTTGGGATGATGGTGTTTTCGA-GAGCATAAG 941
Query 696 AAAGGTGTATGTTAGTTATTCTATCAATCATGTAGCGTGTATCACGTTTGAGTACATCAG 755
|| |||||||||||||||| || || | | || | ||||||| ||| | ||| ||
Sbjct 942 AACGGTGTATGTTAGTTATAATACCACTAACATAAAGAGTATCACATTTCACTAC--CAC 999
Query 756 TAATCACTCAGTTGT-GAAGCGTCAGCACGGG----AA--TA-ACA---C-ATC-ATTAG 802
|| | | ||||||| || ||| || |||||| || || ||| | | | ||
Sbjct 1000 -AACCGCACAGTTGTAGA-GCGACAACACGGGTGGCAAAGTATACAAGACGAAGGAGAAG 1057
Query 803 TAGAAGAGTTTGAGTTAAACTATCCCAATGAATTTATCACATCTGTGGATGGTACTTTCA 862
||||||||||||| | ||||||| || ||| | ||||| | |||||| || || ||||
Sbjct 1058 AAGAAGAGTTTGAGCTCGACTATCCAAACGAACTGATCACTTATGTGGAGGGGACATTCA 1117
Query 863 AAAACTCTGG-CATGAG-GAAAGTGATGTGCGTTACGTCTTTGGTTTTCAAAACATCAAA 920
||| || ||| | | || || | || | | |||||||| ||| |||| ||| |||| |
Sbjct 1118 AAACCTTTGGGCCT-AGCGATAC-GA-G-G-GTTACGTCATTGATTTTGAAATCATCCGA 1172
Query 921 AGGGAGAATTTCTCCGACATATGGAAGCGTGACTGGGACTAAATTTGTGTTGGAGACCAA 980
|||||||| ||||| |||| ||||| ||| |||| || |||||||||||||||| |||
Sbjct 1173 AGGGAGAACCTCTCCAACATTTGGAAATGTGTCTGGTACCAAATTTGTGTTGGAGAACAA 1232
Query 981 AG-ATTGTGCTCTAGCTGGGTTCCATGGATGG-ACTTT--TCTTGGTTTTCTTACTGCTA 1036
|| || ||||| | | ||||||||||||| | || | || || | | | | |||||
Sbjct 1233 AGGAT-GTGCTGTCGTTGGGTTCCATGGACGACACAATGATCGTGATCT-CGT--TGCTA 1288
Query 1037 TTGGTGCATATTTTTCTCTGCTGCCTTGTCCTCCTAATGCGGAGAAACTA-GAAGCACGA 1095
|||| ||||||||| || | | ||| ||||| | ||| ||||||||| || ||| |
Sbjct 1289 TTGGGGCATATTTTAGTCAGATACCT---CCTCCCACTGCAGAGAAACTACGAC-CACAA 1344
Query 1096 GGTTATGATCGAGGAGCTTTTTGGGATGATGGTGTTTACGATGGTGTTAGAAAGATATAT 1155
||| | ||| ||||| || ||||| ||||||||||||||| |||||||||||||||
Sbjct 1345 GGTGGTTATCAAGGAGGTTCATGGGACGATGGTGTTTACGATAAAGTTAGAAAGATATAT 1404
Query 1156 GTAGGACAATGTGAAAATGGTATCGCATTCCTCAAG-TTCGTTTACGACAAGGACACTCG 1214
||||||||||| |||||||||||||||||||||||| || || ||||| ||||| |||||
Sbjct 1405 GTAGGACAATGCGAAAATGGTATCGCATTCCTCAAGATT-GTGTACGATAAGGATACTCG 1463
Query 1215 GATGGTTATTGGAGACGATCATGGAAACAAAACACCACTT-GA-AGTCAAAGAGTTGGAC 1272
|||||||||||||| ||||||||||||||||||||| || || | |||||||||| ||
Sbjct 1464 AATGGTTATTGGAGATGATCATGGAAACAAAACACCA-TTAGATA-TCAAAGAGTTTGAG 1521
Query 1273 CTTGAGTATCCTGGTGAATATGTCACAGCGGTGGAGGGCTGTTACAATAAAGGAATTG-A 1331
| || ||||| ||||||| | || || ||||| || |||||| | | || ||||| |
Sbjct 1522 GTCGAATATCCAAGTGAATACATTACGGCCGTGGATGGTTGTTACGACAGAGTAATTGGA 1581
Query 1332 GGGTGACGTGGAA-TCTATAACCATGCTTAAGTTTAAGACTAACAAACGAACATCTATAT 1390
| ||| || ||| | |||||| ||||||| ||||||||| ||||||||||||||||||
Sbjct 1582 AG-TGAAGTCGAAGT-TATAACTATGCTTAGGTTTAAGACGAACAAACGAACATCTATAC 1639
Query 1391 CCTTTGGATTCGAATCTAGTTCAAGCTTTCTACTCGAGAAAGAAGGCTTCAAAATCGTTG 1450
|| ||||||| |||| ||| ||||||||||||||| | |||| ||||| |||||| ||||
Sbjct 1640 CCGTTGGATTTGAATATAGCTCAAGCTTTCTACTCTACAAAGCAGGCTGCAAAATTGTTG 1699
Query 1451 GGTTCCATGGAAAAGCAAGTAACATGATTCATCAGCTTGGGGTTCATGTCATTCCCATCA 1510
| || |||||||||||||||||||||||| |||| || ||||| ||||| | ||| |||
Sbjct 1700 GATTTCATGGAAAAGCAAGTAACATGATTAATCAACTCGGGGTCCATGTTGTGCCCTTCA 1759
Query 1511 CC 1512
||
Sbjct 1760 CC 1761
> Ahg338247 jgi|Araly1|338247|fgenesh1_pg.C_scaffold_2000346
Length=861
Score = 536 bits (290), Expect = 2e-151
Identities = 353/383 (92%), Gaps = 5/383 (1%)
Strand=Plus/Plus
Query 804 AGAAGAGTTTGAGTTAAACTATCCCAATGAATTTATCACATCTGTGGATGGTACTTTCAA 863
|||| |||||||| || ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 382 AGAA-AGTTTGAGCTAGACTATCCAAATGAATTTATCACATCTGTGGATGGTACTTTCAA 440
Query 864 AAACTCTGGCATGAGGAAAGTGATGTGCGTTACGTCTTTGGTTTTCAAAACATCAAAAGG 923
| | ||| |||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 441 ATATTCTAGCATTAGGAAAGTGAACTGCGTTACGTCTTTGGTTTTCAAAACATCAAAAGG 500
Query 924 GAGAATTTCTCCGACATATGGAAGCGTGACTGGGACTAAATTTGTGTTGGAGACCAAAGA 983
|| ||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 501 GAAAATCTCTCCGACATTTGGAAGCGTGACTGGGACTAAATTCGTGTTGGAGACCAAAGG 560
Query 984 TTGTGCTCTAGCTGGGTTCCATGGATGGACTTTTCTTGGTTTTCTTACTGCTATTGGTGC 1043
||||||||||| ||||||||||||||||||||||||| || ||||||||||||||| ||
Sbjct 561 TTGTGCTCTAGTTGGGTTCCATGGATGGACTTTTCTTCCTTATCTTACTGCTATTGGGGC 620
Query 1044 ATATTTTTCT-CTGCTGCCT-TGTCCTCCTAATGCGGAGAAACTAGAAGCACGAGGTTAT 1101
|||||||||| || |||||| | |||||||| |||||||||||||||| ||| |||||||
Sbjct 621 ATATTTTTCTCCT-CTGCCTCT-TCCTCCTACTGCGGAGAAACTAGAATCACAAGGTTAT 678
Query 1102 GATCGAGGAGCTTTTTGGGATGATGGTGTTTACGATGGTGTTAGAAAGATATATGTAGGA 1161
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 GACCGAGGAGCTTTTTGGGATGATGGTGTTTACGATGGTGTTAGAAAGATATATGTAGGA 738
Query 1162 CAATGTGAAAATGGTATCGCATT 1184
||| ||||||||||||| |||||
Sbjct 739 CAACGTGAAAATGGTATAGCATT 761
Score = 448 bits (242), Expect = 8e-125
Identities = 331/371 (89%), Gaps = 18/371 (5%)
Strand=Plus/Plus
Query 341 TAAGAGGTGGTTTTGAAGGCATTCAATACATCAAGTTCGACTATGTCAAGAGTGGACAGC 400
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 23 TAAGAGGTGGTTTTGAAGGCATTCAATACATCAAGTTCGATTATGTCAAGAGTGGACAAC 82
Query 401 CTAAAATTGGCTCAGTCCACGGTCTCTC-GG-AG-GGTTACTATG-ATGACGA--G-T-C 452
|||||||||||||||||||||||||||| || || |||| || | | | ||| | | |
Sbjct 83 CTAAAATTGGCTCAGTCCACGGTCTCTCGGGTAGAGGTTTCT-CGCA-GGCGAGGGTTAC 140
Query 453 TAC-A-G-CCATTCAAGCACTTCAATTCAAAACTAACATAAAGACTTCTGAGCTGCTAGG 509
||| | | | | || || | | |||||||||||||| |||||||||||||||||| ||
Sbjct 141 TACGACGACGAGTCTAG-A--GCCATTCAAAACTAACAGAAAGACTTCTGAGCTGCTGGG 197
Query 510 ATATGAAAAGGGTAAGAAGTTTTCACTTGCAGACAAGGGAAAGAAAATTATTGGGTTTCA 569
||||||||||| ||||||||||||||||||| ||||||||| |||||| ||||| |||||
Sbjct 198 ATATGAAAAGGATAAGAAGTTTTCACTTGCACACAAGGGAAGGAAAATCATTGGATTTCA 257
Query 570 TGGATATGCTGAGAAGAACCTCATTTCTCTTGGAGCATATTTCACAACAGTTTCTGTTAC 629
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 258 TGGATATGCTGAGAAGAACCTCATTTCTCTTGGAGCATATTCCACAACAGTTTCTGTTAG 317
Query 630 TAAATCGGTATGTCACGGTAGTAAGAT-AATCGAGTCTTGGGATGATGGTGTTTTTGACG 688
|||||||||||||||||||||||| || || ||||| |||||||||||||||||| ||||
Sbjct 318 TAAATCGGTATGTCACGGTAGTAA-ATTAAACGAGTATTGGGATGATGGTGTTTTCGACG 376
Query 689 GCATAAGAAAG 699
|||||||||||
Sbjct 377 GCATAAGAAAG 387
> Ahg907330 jgi|Araly1|907330|Al_scaffold_0002_411
Length=594
Score = 108 bits (58), Expect = 1e-22
Identities = 70/76 (92%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 6 GATTGAGATTGACCATCTTAACAATGAGCATCTTGAATCTGTTGAGAGTTATTACGACGA 65
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct 516 GATTGAGATTGACCATCTTAACAATGAGCATCTTGAATCTGTTGAGGGTTATTACAACAA 575
Query 66 TGCACCCTGTTACATT 81
| || ||||| |||||
Sbjct 576 TACATCCTGTAACATT 591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56830645540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5