BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61240.1
Length=1702
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475199 jgi|Araly1|475199|fgenesh2_kg.2__329__AT1G61240.4 2531 0.0
Ahg910866 jgi|Araly1|910866|Al_scaffold_0001_1120 1024 0.0
> Ahg475199 jgi|Araly1|475199|fgenesh2_kg.2__329__AT1G61240.4
Length=1779
Score = 2531 bits (1370), Expect = 0.0
Identities = 1501/1562 (96%), Gaps = 18/1562 (1%)
Strand=Plus/Plus
Query 121 TTTTTCGAAAAGATACATTC---TTGCATGTGCGTAGATCAGCCTTGTATAGAACTGAGA 177
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 228 TTTTTCAAAAAGATACATTCTTGTTGCATGTGCGTAGATCAGCCTTGTATAGAACTGAGA 287
Query 178 TTTTGGTGAAGCTTTGTTGAA-TTGGTTTCTTTGTTCTTTCTGTTCTTGTGAAGGGAACA 236
|||||||||||| || ||||| ||||||||||||||| ||||||||||||||||| |
Sbjct 288 TTTTGGTGAAGC-TT-TTGAATTTGGTTTCTTTGTTC--TCTGTTCTTGTGAAGGG---A 340
Query 237 ACACAAAGACGGTGGCTTTGCTCGGTAAATAGATTATGGAACATGGTTTACCGTCTATTA 296
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 341 ACACAAAGACGGTGGCTTTCCTCGGTAAATAGATTATGGAACATGATTTACCGTCTATTA 400
Query 297 AATCATGGAAGTCACTTGTTAAGAGAAGAAACAATGCTCAAGAAGGGGGTAAATCGTCAT 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 401 AATCATGGAAGTCACTTGTTAAGAGAAGAAACAATGCTCAAGAAGGGGGTAAATCGTCGT 460
Query 357 GGAAAATGAAACCAG-TTGTGGTGCTAATGTGTACAGTACTTTTGATCTTTTGGTATAAG 415
||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 461 GGAAAATGAAACC-GATTGTGGTGCTCATGTGTACAGTACTTTTGATCTTTTGGTATAAG 519
Query 416 ACTACAAATATTCAGTATGAACAAACAGAGATAGAAGAAACAGATTATCCATTTGAGATG 475
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 520 ACTACAAATATTCAGTATGAACAGACAGAGATAGAAGAAACAGATTATCCATTTGAGATG 579
Query 476 GCAAAGGAATCTGAACCGGTCAGTGAAAAGTTGAAAGGCTTACCTTTTGGTATCATGCAA 535
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 580 GCAAAGGAATCTGAACCGGTCAGTGAAAAGTTGAAAGGCTTGCCTTTTGGTATCATGCAA 639
Query 536 CCTAAATCAGATTTGGAGTTAAAGCCACTTTGGTCAAGTAGTAGTTTGAGGTCAAAGAGC 595
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 CCTAGATCAGATTTGGAGTTAAAGCCACTTTGGTCAAGTAGTAGTTTGAGGTCAAAGAGC 699
Query 596 GGCGAATTGACCAACCGTAACTTGTTGGCAATGCCGGTAGGACTTAAGCAAAAGGATAAT 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 GGCGAATTGACCAACCGTAACTTGTTGGCAATGCCGGTAGGACTTAAGCAAAAGGATAAT 759
Query 656 GTTGATGCTGTTGTAAAGAAGTTTCTTCCTGCGAATTTCACTGTCATTCTATTTCATTAT 715
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 760 GTTGATGCTGTTGTAAAGAAGTTTCTTCCTGCAAATTTCACTGTCATTCTATTTCATTAT 819
Query 716 GATGGAAACATGGATCAATGGTGGGATCTAGAGTGGAGCTCAAAAGCCATACACATTGTT 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 GATGGAAACATGGATCAATGGTGGGATCTAGAGTGGAGCTCAAAAGCCATACACATTGTT 879
Query 776 GCACATAACCAAACAAAATGGTGGTTTGCGAAACGTTTTCTCCATCCTGATATTGTCTCC 835
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 880 GCACATAACCAGACAAAATGGTGGTTCGCGAAACGTTTTCTCCATCCTGATATTGTCTCC 939
Query 836 ATTTACGATTATGTTTTTCTTTGGGATGAAGATCTTGGAGTGGAGAATTTCAACCCTCAA 895
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 940 ATCTACGATTATGTTTTTCTTTGGGATGAAGATCTTGGAGTGGAGAATTTCAACCCGGAA 999
Query 896 AAGTACCTGAGGATAGTTAAAACAGCGGGACTGGAGATATCTCAACCGGCCTTGCACCCA 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 AAGTACCTGAGGATAGTTAAAACAGCGGGACTGGAGATATCTCAACCGGCCTTGCACCCA 1059
Query 956 AACTCAACTGAAGTTCACCATAGAATTACAGTCCGGTCTAGAACGAAAATATTTCATAGG 1015
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1060 AACTCAACCGAAGTTCACCATAGAATTACAGTTCGGTCTAGAACGAAAATATTTCATAGG 1119
Query 1016 CGAGTTTACGATAGTAGAGGCAATATGAAATGTTCAAATGCTAGTGAAGGGCCCCCATGC 1075
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1120 CGAGTTTACGATAGTAGAGGCAATATGAAGTGTTCAAATGCTAGTGAAGGGCCCCCATGC 1179
Query 1076 ACAGGATTTGTTGAAGGAATGGCTCCAGTGTTTTCGAGATCTGCATGGTTTTGCACTTGG 1135
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1180 ACCGGATTTGTTGAAGGAATGGCTCCAGTGTTTTCGAGATCTGCGTGGTTTTGCACTTGG 1239
Query 1136 AATCTAATACAAAATGATCTGGTTCATGGTTGGGGAATGGATATGAAACTTGGATACTGT 1195
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1240 AATCTAATACAAAATGATCTGGTTCATGGGTGGGGAATGGATATGAAACTTGGTTACTGT 1299
Query 1196 GCTCAGGGTGACCGTAGCAAGAAAGTAGGCATTGTCGACAGTGAATATATCTTCCATCAA 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 GCTCAGGGTGACCGTAGCAAGAAAGTAGGCATTGTCGACAGTGAATATATCTTCCATCAA 1359
Query 1256 GGCATTCAAACACTAGGTGGAAGCGGTTATCCCGATAAGAAGAACTCAGCTCGCAGCGGA 1315
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1360 GGCATTCAAACTCTAGGTGGAAGCGGTTATCCCGATAAGAAGAACTCAGCTCGCAGTGGA 1419
Query 1316 GTAAATAGGAGACGCGGTTCTGCGACTTTTGATTCAAGAACAGAGATACGGAGACAATCA 1375
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1420 GTGAATCGGAGACGCGGTTCTGCGACTTTTGATTCAAGAACAGAGATACGGAGACAATCA 1479
Query 1376 ACGTGGGAGCTGCAAGCTTTTAAAGAACGGTGGAACCAAGCGGTTGCAGAAGACAA-ATA 1434
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| | |
Sbjct 1480 ACGTGGGAGCTTCAAGCTTTTAAAGAACGGTGGAACCAAGCAGTTGCAGAAGACAAGA-A 1538
Query 1435 CTGGGTGGAGCGGTCTTCACCGAGCCGGAACCGAATAGGCAATAACCGGAGATTAAAAAG 1494
|||| || || |||||| ||| |||||||||||| |||||||||||||||||||||||
Sbjct 1539 TTGGGCCGACCGATCTTCATCGACCCGGAACCGAATTGGCAATAACCGGAGATTAAAAAG 1598
Query 1495 AAGTAGTATGATTCCAAGTTTATTGCAGAGGAAAGCTGAAGAGACTACAACATAAACAGA 1554
||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1599 AAGTAGTGTGATTCCAAGTTTAGTGCAGAGGAAAGCTGAAGAGACAACAACATAAACAGA 1658
Query 1555 TACAGTTTTAATCAGATTAAATATAGAGAAA-TGtttttttGGTTGGTCTCATTGTTATA 1613
||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||
Sbjct 1659 TACAGTTTTAATCAGATTAAATATAGAGAAAGTTTTTTTTTTTTTGGTCTCATTGTTATA 1718
Query 1614 TATAAGTTAATAGTTAATCATTT-ACCTCTCTTTGATTAGTGTAGTTTTCATGATCTTCT 1672
||||||||||||||||||||||| || ||||||||||||||||||||| |||| ||||||
Sbjct 1719 TATAAGTTAATAGTTAATCATTTTAC-TCTCTTTGATTAGTGTAGTTTCCATGGTCTTCT 1777
Query 1673 TT 1674
||
Sbjct 1778 TT 1779
> Ahg910866 jgi|Araly1|910866|Al_scaffold_0001_1120
Length=1311
Score = 1024 bits (554), Expect = 0.0
Identities = 976/1174 (83%), Gaps = 51/1174 (4%)
Strand=Plus/Plus
Query 289 GTCTATTAAATCATGGAAGTCACTTGTTAAGAGAAGAAA-CAATGCTCAAGAAGGGGGTA 347
||| || ||||||| ||||||||||||||| |||| ||| |||||||||||||| | |||
Sbjct 27 GTCGATCAAATCATTGAAGTCACTTGTTAAAAGAA-AAACCAATGCTCAAGAAGTGAGTA 85
Query 348 AAT-CGTCATGGAAAATGAAACCAGTTGT-GGTGCTAATGTGTACAG-TACTTTTGATCT 404
||| || ||||||||||| || || | | | || |||||||||| | ||||||||||
Sbjct 86 AATCCG-GGTGGAAAATGAAGCCTTTTTTAGCT-CTCATGTGTACAGCT-CTTTTGATCT 142
Query 405 TTTGGTATAAGACTACAAATATTCAGTATGAACAAACAGAGATAGAAGAAACAGATTATC 464
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 143 TTTGGTATAAGACCACAAATATTCAGTTTGAACAAACAGAGATAGAAGAAACAGATTATC 202
Query 465 CATTTGAGATGGCAAAGGAATCTGAACCGGTCAGTGA-AAAGTTGAAAGGCTTACCTTTT 523
| ||||| |||||||||||||||||| | || | || ||| || |||||||| ||| |
Sbjct 203 CTTTTGACATGGCAAAGGAATCTGAAGCAGTTAACGATAAA-TTAAAAGGCTTGCCTCAT 261
Query 524 GGTATCATGCAACCTAAATCAGAT-TTGGAGTTAAAGCCACTTTGGTCAAGTAGTAGTTT 582
|| ||||| || |||| ||||||| ||| | ||||| || || ||||| || |||||| |
Sbjct 262 GGAATCATACAGCCTAGATCAGATCTTGAA-TTAAAACCTCTCTGGTCTAGAAGTAGTCT 320
Query 583 GAGGTCAAAGAGCGGCGAATTGACCAACCGTAACTTGTTGGCAATGCCGGTAGGACTTAA 642
|||||||||| | | ||| |||| |||||||||||||||||||| || |||||| ||||
Sbjct 321 GAGGTCAAAGGGTGTTGAAATGACTAACCGTAACTTGTTGGCAATACCCGTAGGAATTAA 380
Query 643 GCAAAAGGATAATGTTGATGCTGTTGTAAAGAAGTTTCTTCCTGCGAATTTCACTG-TCA 701
|||||||| |||||| |||||| ||||||||||||||||||| ||||||||||| | |
Sbjct 381 GCAAAAGGTTAATGTCGATGCTCTTGTAAAGAAGTTTCTTCCCGCGAATTTCAC-GATTG 439
Query 702 TTCTATTTC-ATTATGATGGAAACATGGATCAATGGTGGGATCTAGAGTGGAGCTCAAAA 760
|||| |||| |||| |||||||| |||||| |||||||||||||||||||||| |||||
Sbjct 440 TTCT-TTTCCATTACGATGGAAATATGGATAAATGGTGGGATCTAGAGTGGAGTTCAAAG 498
Query 761 GCCATACACATTGTTGCACATAACCAAACAAAATGGTGGTTTGCGAAACGTTTTCTCCAT 820
|||||||| || |||||||| ||||| || |||||||||||||| ||||| || ||||||
Sbjct 499 GCCATACATATAGTTGCACAAAACCAGACTAAATGGTGGTTTGCAAAACGATTCCTCCAT 558
Query 821 CCTGATATTGTCTCCATTTACGATTATGTTTTTCTTTGGGATGAAGATCTTGGAGTGGAG 880
|| ||| |||| |||||||| |||||| ||||||||||||| || ||||||||||| |||
Sbjct 559 CCAGATGTTGTATCCATTTATGATTATATTTTTCTTTGGGACGAGGATCTTGGAGTAGAG 618
Query 881 AATTTCAACCCTCAAA-AGTACCTGAGGATAGTTAAAACAGCGGGACTGGAGATATCTCA 939
|||||||| || | | | || |||||||||||||| ||| ||||||||||||||||||
Sbjct 619 AATTTCAATCCAGAGAGA-TATTTGAGGATAGTTAAATCAGTGGGACTGGAGATATCTCA 677
Query 940 ACCGGCCTTGCACCCA-AACTCAACTGAAGTTCACCATAGAATTACAGTCCGGTCTAGAA 998
|||||| ||| | | | |||||||||||| | ||||||| ||| ||| |||| ||||| |
Sbjct 678 ACCGGCTTTGGATC-ATAACTCAACTGAAATCCACCATAAAATCACACTCCGTTCTAGGA 736
Query 999 CGAA-AATATTTCATAGGCGAGTTTACGAT-AGTAGAGGCAATATGAAA--TGTTCAAAT 1054
| || || |||||||||| |||||||| || | ||||||| ||| ||| ||||| |||
Sbjct 737 CAAAGAA-ATTTCATAGGAGAGTTTAC-ATCAATAGAGGCCATA--AAAGGTGTTCTAAT 792
Query 1055 GCTAGTGAAGGGCCCCCATGCACAGGATTTGTTGAAGGAATGGCTCCAGTGTTTTCGAGA 1114
|||||| || || || ||||| ||||||||||||||||||||||| |||||||||| |
Sbjct 793 ACTAGTGCAGATCCTCCTTGCACCGGATTTGTTGAAGGAATGGCTCCGGTGTTTTCGAAA 852
Query 1115 TCTGCATGGTTTTGCACTTGGAATCTAATACAAAATGATCTGGTTCATGGTTGGGGAATG 1174
|||| |||||||||||||||||||| ||||| |||||| |||||||||| |||||||||
Sbjct 853 GCTGCTTGGTTTTGCACTTGGAATCTTATACAGAATGATTTGGTTCATGGATGGGGAATG 912
Query 1175 GATATGAAACTTGGATACTGTGCTCAGGGTGACCGTA-GCAAGAAA-GTAGGCATTGTCG 1232
|||||||||||||| ||||| || ||||| ||||| | | || ||| ||||| ||||| |
Sbjct 913 GATATGAAACTTGGGTACTGCGCACAGGGAGACCGAACG-AA-AAACGTAGGGATTGTGG 970
Query 1233 ACAGTGAATATATC-TTCCATCAAGGCATTCAAACACTAGGTGGAAGCGGTTATCCCGAT 1291
| ||||| |||||| ||| |||||||||||||||| |||||| ||| | || || ||
Sbjct 971 ATAGTGAGTATATCGTTC-ATCAAGGCATTCAAACTTTAGGTGAAAGTG-TT--CCTGAA 1026
Query 1292 AAGAAGAACTCAGCTCGCAGCG-GA-GTAAAT---AGGAGACGCGGTTC-TGCGACTTTT 1345
||||||| | || || || ||| || || | ||||||| | | | | | || |||
Sbjct 1027 AAGAAGA-C-CA-CT-GC-GCGTGATGTTAGGGCCAGGAGACACAGC-CATACAACCTTT 1080
Query 1346 GATTCAAGAACAGAGATACGGAGACAATCAACGTGGGAGCTGCAAGCTTTTAAAGAACGG 1405
||||||||||| |||||| |||||||||| || |||||||| ||| |||||||||||||
Sbjct 1081 GATTCAAGAACCGAGATAAGGAGACAATCGACATGGGAGCTTCAAACTTTTAAAGAACGA 1140
Query 1406 TGGAACCAAGCGGTTGCAGAAGACAAATA-CTGG 1438
|||| | ||||||| | ||||||||| || ||||
Sbjct 1141 TGGAGCAAAGCGGTAGAAGAAGACAA-TAACTGG 1173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63839250620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5