BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61250.1
Length=1247
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475195 jgi|Araly1|475195|fgenesh2_kg.2__325__AT1G61250.1 1938 0.0
Ahg471253 jgi|Araly1|471253|fgenesh2_kg.1__1207__AT1G11180.1 885 0.0
> Ahg475195 jgi|Araly1|475195|fgenesh2_kg.2__325__AT1G61250.1
Length=1256
Score = 1938 bits (1049), Expect = 0.0
Identities = 1193/1259 (95%), Gaps = 24/1259 (2%)
Strand=Plus/Plus
Query 8 CTTGTCTTCAACGTTCGGC-TAATCCTTGGTCCGTGCT-AAGATCTTAGATCGATTTCTA 65
||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||
Sbjct 3 CTTGTCTTCAACGTTCGGCTTAATCCTTGGTCCGTGTTCAAGATCTTAGATCGATTTCTA 62
Query 66 AAGTCTTCGTCT---TCTTCTTCTTCTGATAACTAGCTTTTTCAATCTTCTGAAGCTTTA 122
|||||||| ||| ||||| ||| |||||||||||||| || |||||||||||||||||
Sbjct 63 AAGTCTTCTTCTCCGTCTTCGTCTGCTGATAACTAGCTTCTTGAATCTTCTGAAGCTTTA 122
Query 123 ATTTTTTCATACCCATGGCTAATCGTTATGATCCAAATCCTTTCGCTGAGGAAGAAGAAG 182
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 A-TTTTTCATAGCCATGGCTAATCGTTATGATCCAAATCCTTTCGCTGAGGAAGAAGAAG 181
Query 183 TCAATCCTTTCGCTAATGCTAGAGGAGTTCCACCTGCGTCGAATTCGAGACTTTCGCCTT 242
||||||||||||||||| ||| ||| ||||| ||||||||||||||||||||||||||||
Sbjct 182 TCAATCCTTTCGCTAATCCTAAAGGTGTTCCGCCTGCGTCGAATTCGAGACTTTCGCCTT 241
Query 243 TGCCTCCAGAGCCTGTTGGTTTCGATTATGGTCGAACCGTAGACATTCCTCTTGACAGAG 302
| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 242 TACCTCCAGAGCCTGTTGGTTTCGATTATGGTCGAACCGTGGACATTCCTCTTGAGAGAC 301
Query 303 CTGGTACACAGGATTTGAAGAAGAAAGAGAAGGAACTCCAAGCCAAAGAAGCTGAGCTAA 362
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 CTGGTGGACAGGATTTGAAGAAGAAAGAGAAGGAACTCCAAGCCAAAGAAGCTGAGCTAA 361
Query 363 AACGACGAGAGCAGGACCTCAAACGGAAAGAAGATGCTGCTGCACGAGCTGGAATCGTTA 422
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 362 AACGACGAGAGCAGGAACTCAAACGAAAAGAAGATGCTGCTGCACGAGCTGGAATCGTTA 421
Query 423 TTGAAGTGAAAAACTGGCCGCCTTTCTTCCCACTTATCCACCATGACATCGCAAACGAAA 482
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 422 TCGAAGTGAAAAACTGGCCGCCTTTCTTCCCGCTTATCCACCATGACATCGCAAACGAAA 481
Query 483 TTCCGGTTCATCTCCAAAGACTACAGTATGTTACCTTTGCAACGTATTTGGGGTTGGTTC 542
|||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 482 TTCCAGTTCATCTCCAAAGACTACAGTATGTTACCTTCGCAACGTATTTGGGTTTGGTTC 541
Query 543 TTTGTCTTTTCTGGAATATCATCGCCGTTACTACAGCTTGGATCAAAGGAGAAGGAGTGA 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 TTTGTCTTTTCTGGAATATCATCGCCGTTACTACAGCTTGGATCAAAGGAGAAGGAGTGA 601
Query 603 CGATATGGCTTCTTGCCTTAATTTACTTCATAGCGGGTGTTCCAGGAGGCTATGTGTTAT 662
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 602 CGATATGGCTTCTTGCCTTAATTTACTTCATAGCTGGTGTTCCAGGAGGCTATGTGTTAT 661
Query 663 GGTATCGACCACTCTACCGTGCCTTCAGAACTGATAGTGCATTGAGCTTTGGATGGTTTT 722
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 GGTATCGGCCACTCTACCGTGCCTTCAGAACTGATAGTGCATTGAGCTTTGGATGGTTTT 721
Query 723 TCTTGTTCTATATGCTCCACATTGCTTTCTGCGTCTTTGCTGCAGTTGCTCCACCTGTCG 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 TCTTGTTCTATATGCTCCACATTGCTTTCTGCGTCTTTGCTGCAGTTGCTCCACCTGTCG 781
Query 783 TCTTCAAAGGAAAATCTCTTGCTGGGATCTTACCTGCAATAGATGTCTTAAGTGGTCAAG 842
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 782 TCTTCAAAGGAAAATCTCTTGCTGGGATCTTACCTGCAATAGATGTCTTAAGCGGTCAAG 841
Query 843 CAATTGTTGGGATATTCTACTTCATTGGGTTTGCATTTTTCTGCCTCGAATCAGTGGTTA 902
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 842 CAATTGTTGGGATATTCTACTTCATTGGGTTTGCGTTTTTCTGCCTCGAATCAGTGGTTA 901
Query 903 GCATCTGGGTTATTCAGCAAGTGTATATGTACTTCCGAGGCAGCGGGAAACAAGATCAAA 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 GCATCTGGGTTATTCAGCAAGTGTATATGTACTTCCGAGGCAGCGGGAAACAAGATCAAA 961
Query 963 TGAGACGGGAAGCAGCGAGAGGAGCCTTGAGAGCCGCTGTTTGAGAG-TTCTCCTTGTAA 1021
||||||||||||| || |||||||||||||||||||||||||||||| || || ||||||
Sbjct 962 TGAGACGGGAAGCGGCAAGAGGAGCCTTGAGAGCCGCTGTTTGAGAGGTT-TCGTTGTAA 1020
Query 1022 CATTCTGGTTTGTGTATGCA--CT-----GTTTCTTT-TTT---CAGATTTTCTTGAAGt 1070
|||||||||||||||||||| || |||||||| ||| | ||||||||| ||||
Sbjct 1021 CATTCTGGTTTGTGTATGCAATCTTTACTGTTTCTTTCTTTTTTCTGATTTTCTT-AAGT 1079
Query 1071 ctctctctctctctctctctc--tctctGCTCTATAAACaaaaaaaaaaaGATTTAATTT 1128
||||||||||||||||||||| |||||||||||||| || |||||||| ||| |||||
Sbjct 1080 CTCTCTCTCTCTCTCTCTCTCCCTCTCTGCTCTATAAGCACAAAAAAAATTATTCAATTT 1139
Query 1129 TTCCTTTGTACCTTTATGTCATGTAAATTTGTTTGTTCAAAAATCAGAGTTCAGATTCAT 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TTCCTTTGTACCTTTATGTCATGTAAATTTGTTTGTTCAAAAATCAGAGTTCAGATTCAT 1199
Query 1189 ACGTATTTTGAAATCATTCATGAAtttttactttttttATAAGAACTCATCTTACATCC 1247
|||||||| |||| |||||| |||| ||| |||||| |||||||||||||||||||||
Sbjct 1200 ACGTATTTCGAAACCATTCAA-AATTGTTAGTTTTTT-ATAAGAACTCATCTTACATCC 1256
> Ahg471253 jgi|Araly1|471253|fgenesh2_kg.1__1207__AT1G11180.1
Length=941
Score = 885 bits (479), Expect = 0.0
Identities = 753/880 (86%), Gaps = 39/880 (4%)
Strand=Plus/Plus
Query 135 CCATGGCTAATCGTTATGATCCAAATCCTTTCG-CTGAGGAAGAAGAAGTCAATCCTTTC 193
|||||||| |||||| |||| || || |||| | || |||| ||||||||||||||
Sbjct 32 CCATGGCTGGTCGTTACGATCGTAACCCATTCGAC-GAACAAGATGAAGTCAATCCTTTT 90
Query 194 GCTAATGCTAGAGGA--GTTCCAC-CTGCGTCGAATTCGAGACTT-TCGCCTTTGCCTCC 249
||||| || | ||| ||||| | |||| |||||||| ||| || ||||||||||||||
Sbjct 91 GCTAACCCT-G-GGAGTGTTCC-CGCTGCTTCGAATTCCAGA-TTATCGCCTTTGCCTCC 146
Query 250 AGAGCCTGTTGGTTTCGATTATGGTCGAACCGTAGACATTCCTCTTGACAGA-----G-C 303
|| |||| |||||| | ||| | | || |||||||||||||||||| | |
Sbjct 147 CGAACCTGCTGGTTTTGGTTA---T-G----GT-GACATTCCTCTTGACAGACCTGGGTC 197
Query 304 TGGTACACAGGATTTGAAGAAGAAA-GAGAAGGAACTCCAAGCCAAAGAAGCTGAGCTAA 362
|||||||||||||||||| || ||| |||||||| || ||||||||||||||||||||||
Sbjct 198 TGGTACACAGGATTTGAA-AAAAAAGGAGAAGGAGCTTCAAGCCAAAGAAGCTGAGCTAA 256
Query 363 AACGACGAGAGCAGGACCTCAAACGGAAAGAAGATGCTGCTGCACGAGCTGGAATCGTTA 422
|||| |||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 257 GACGAAGAGAGCAGGATCTCAAACGGAAAGAGGATGCTGCTGCACGAGCCGGAATTGTTA 316
Query 423 TTGAAGTGAAAAACTGGCCGCCTTTCTTCCCACTTATCCACCATGACATCGCAAACGAAA 482
| || | |||||||||||| || |||||||||||||||||||||||||| ||||| ||||
Sbjct 317 TCGAGGCGAAAAACTGGCCACCCTTCTTCCCACTTATCCACCATGACATTGCAAATGAAA 376
Query 483 TTCCGGTTCATCTCCAAAGACTACAGTATGTTACCTTTGCAACGTATTTGGGGTTGGTTC 542
|||| |||| |||||||| ||||||||| || | |||||||| ||||||||||||||||
Sbjct 377 TTCCTGTTCGGCTCCAAAGGCTACAGTATATTGCATTTGCAACATATTTGGGGTTGGTTC 436
Query 543 TTTG-TCTTTTCTGGAATATCATCGCCGTTACTACAGCTTGGATCAAAGGAGAAGGAGTG 601
||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 437 -TTGCACTTTTCTGGAATATCATCGCTGTTACTACTGCTTGGATCAAAGGAGAAGGAGTA 495
Query 602 ACGATATGGCTTCTTGCC-TTAATTTACTTCATAGCGGGTGTTCCAGGAGGCTATGTGTT 660
|| || |||||||| ||| || |||||||||||| ||||||| |||||||||||||||||
Sbjct 496 ACAATTTGGCTTCTCGCCATT-ATTTACTTCATATCGGGTGTCCCAGGAGGCTATGTGTT 554
Query 661 ATGGTATCGACCACTCTACCGTGCCTTCAGAACTGATAGTGCATTGAGCTTTGGATGGTT 720
||||||||| || ||||||||||||||||||| |||||||||||| | ||||||||||||
Sbjct 555 ATGGTATCGGCCTCTCTACCGTGCCTTCAGAAGTGATAGTGCATTCAACTTTGGATGGTT 614
Query 721 TTTCTTGTTCTATATGCTCCACATTGC-TTTCTGCGTCTTTGCTGCAGTTGCTCCACCTG 779
|||||||||||| |||||||||| | | |||||||||||||||||||||||||||||||
Sbjct 615 TTTCTTGTTCTACATGCTCCACA-TACTTTTCTGCGTCTTTGCTGCAGTTGCTCCACCTA 673
Query 780 TCGTCTTCAAAGGAAAATCTCTTGCTGGG-ATCTTACCTGCAATAGATGTCTTAAGTGGT 838
| ||||||||||||||||| ||||| ||| || ||||||||||||||||| || || | |
Sbjct 674 TTGTCTTCAAAGGAAAATCACTTGC-GGGCATATTACCTGCAATAGATGTGTTGAGCGCT 732
Query 839 CAAGCAATTGTT-GGGATATTCTACTTCATTGGGTTTGCATTTTTCTGCCTCGAATCAGT 897
|| ||| ||| | ||||| ||||||||||| ||||||| || |||||||| ||||||||
Sbjct 733 CAGGCA-TTGGTCGGGATCTTCTACTTCATCGGGTTTGGGTTATTCTGCCTTGAATCAGT 791
Query 898 GGTTAGCATCTGGGTTATTCAGCAAGTGTATATGTACTTCCGAGGCAGCGGGAAA-CAAG 956
||| ||||||||||||||||||||||| || |||||||||||||| ||||||||| | |
Sbjct 792 GGTCAGCATCTGGGTTATTCAGCAAGTATACATGTACTTCCGAGGAAGCGGGAAAGCG-G 850
Query 957 ATCAAATGAGACGGGAAGCAGCGAGAGGAGCCTTGAGAGC 996
|| | ||||||| ||| || || ||||||||| |||||||
Sbjct 851 ATGAGATGAGACAGGATGCTGCAAGAGGAGCCATGAGAGC 890
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46586204574
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5