BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G61255.1

Length=541
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg475194 jgi|Araly1|475194|fgenesh2_kg.2__324__AT1G61255.1          544    3e-154


> Ahg475194 jgi|Araly1|475194|fgenesh2_kg.2__324__AT1G61255.1
Length=444

 Score =  544 bits (294),  Expect = 3e-154
 Identities = 400/448 (89%), Gaps = 20/448 (4%)
 Strand=Plus/Plus

Query  1    ATGGCTACAAAACTCAATCTCCTCTTCACGATTTTGCTTCTCACACTAACACTCTCTCAC  60
            ||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct  1    ATGACTACAAAACTAAATCTCCTCTTCACGATTTTGCTTCTCACACTAACACACTCTTAC  60

Query  61   TCACG-CCCGGCCCGACCCGAATCATCATCATCAACCGGATCCTACTCGGATCAGCTCAA  119
            ||||| ||| | |||||| | |  ||||||||||||||||||||||||||||||||||||
Sbjct  61   TCACGCCCCAG-CCGACCAG-A--ATCATCATCAACCGGATCCTACTCGGATCAGCTCAA  116

Query  120  GAAACACTCTAAA-G--A---TAAC---TATAACAAGGGCTATGGATCAGGAGGATACCC  170
            |||| |||||||| |  |   ||||    || |||||||||||||| |||||||||||||
Sbjct  117  GAAAAACTCTAAAGGTAACTTTAACAAGAATGACAAGGGCTATGGACCAGGAGGATACCC  176

Query  171  TGGCCTTACAACCGAACCAGCAACCGGTTTTATTTTACCGGGTTCCGGTCCTGGCGGTAG  230
            |||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct  177  TGGCCTTACAACTGAACCGGCAACCGGTTTTATTTTACCGGGTTCCGGTCCTGGTGGTAG  236

Query  231  TTACAGCGAACTTAGCGGCGGATATAGCAAAGGACGTGGGGTGAGACTAACGGTGATGTG  290
            |||||||||||| ||||||| | ||| ||||||||||| |||||||||| ||||| ||||
Sbjct  237  TTACAGCGAACTAAGCGGCGAAAATAACAAAGGACGTGCGGTGAGACTATCGGTGGTGTG  296

Query  291  TGAAGAGAAAGGTCATTGTTACATGAAGAAGCTGACTTGTCCGGCAAAGTGTTTCAAGTC  350
            | ||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||
Sbjct  297  TAAAGAGAAAGGTCATTGTTACAAGAAGGAGCTGACTTGTCCGGCGAAGTGTTTCAAGTC  356

Query  351  TTTAAGCCGGAAAGGCAAAGGATAC----g--gtggtggtggtggtggtTGCACCATTGA  404
            |||||||||||| | ||||| ||||    |  ||||||| ||||||||||||||||||||
Sbjct  357  TTTAAGCCGGAACGTCAAAGTATACATTGGTAGTGGTGGAGGTGGTGGTTGCACCATTGA  416

Query  405  TTGTAAGAAGTGTGTGGCTTATTGTTGA  432
            ||||||||||||||||||||||||||||
Sbjct  417  TTGTAAGAAGTGTGTGGCTTATTGTTGA  444



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19726439513


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5