BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61270.1
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475192 jgi|Araly1|475192|fgenesh2_kg.2__322__AT1G61270.1 1965 0.0
Ahg927581 jgi|Araly1|927581|scaffold_300038.1 1417 0.0
> Ahg475192 jgi|Araly1|475192|fgenesh2_kg.2__322__AT1G61270.1
Length=1368
Score = 1965 bits (1064), Expect = 0.0
Identities = 1260/1353 (93%), Gaps = 20/1353 (1%)
Strand=Plus/Plus
Query 1 ATGAAAGG-AATCCCAAGTTCGTCAAACCAGATCCTAAACCAAGATCTTGTTGAGGATCA 59
|||| ||| ||| |||||||| ||||||| |||||||||||||||||||| ||||||||
Sbjct 1 ATGAGAGGAAAT-CCAAGTTCACCAAACCAAATCCTAAACCAAGATCTTGTGGAGGATCA 59
Query 60 ATCATTTGAGCTGGAAGATTGGCTTCCAATTACAGCATCACGAAATGCTAATTGGTACTA 119
|||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||
Sbjct 60 ATCATTTGAGCTGGAAGATTGGCTTCCAATCACCGCATCACGAAATGCCAATTGGTACTA 119
Query 120 TTCAGCTTTCCACAACGTCACTGCCATAGTTGGTGCTGGAGTTCTTGGTCTCCCTTACGC 179
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 120 TTCGGCTTTCCACAACGTCACTGCCATAGTTGGTGCTGGAGTTCTTGGTCTTCCTTACGC 179
Query 180 CATGTCAGAACTTGGATGGGGACCTGGAGTTGTGGTGTTGATCCTGTCATGGGTCATAAC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CATGTCAGAACTTGGATGGGGACCTGGAGTTGTGGTGTTGATCCTGTCATGGGTCATAAC 239
Query 240 GTTATACACGTTCTGGCAAATGATTGAGATGCACGAAATGTTTGAAGGGAAACGGTTTGA 299
||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 240 GTTGTACACATTCTGGCAAATGATTGAGATGCACGAAATGTTTAAAGGGAAACGGTTTGA 299
Query 300 TAGGTACCACGAGCTAGGACAAGCAGCCTTTGGCAAAAAGCTTGGTTTGTACATCGTCGT 359
||||||||| ||||| || ||||||||||||||| |||||||||||||||||||| | ||
Sbjct 300 TAGGTACCATGAGCTGGGCCAAGCAGCCTTTGGCGAAAAGCTTGGTTTGTACATCATAGT 359
Query 360 GCCGCTTCAACTTCTTGTTGAGA-CAAGTGCTTGCATAGTGTATATGGTGACAGGAGGTG 418
|||||| |||||||||||||| | | |||||||||||||| |||||||||||||||||||
Sbjct 360 GCCGCTACAACTTCTTGTTGAAATC-AGTGCTTGCATAGTCTATATGGTGACAGGAGGTG 418
Query 419 AATCACTGAAAAAGATTCATC-AACTTTCTGTGGGAG-ACTACGAGTGTAGAAAGTTGAA 476
|||| ||||||| ||||||| || |||||||||||| || ||||||| |||||||||||
Sbjct 419 AATCGTTGAAAAATATTCATCGAA-TTTCTGTGGGAGAAC-ACGAGTGCAGAAAGTTGAA 476
Query 477 AGTTCG-ACACTTCATTTTGATCTTTGCCTCTTCACAGTTTGTGCTTTCCCTTCTTA-AA 534
|| ||| |||||||||||||||||||||||||||||| |||||||||| |||| || ||
Sbjct 477 AG-TCGTACACTTCATTTTGATCTTTGCCTCTTCACAACTTGTGCTTTCTCTTC-TAGAA 534
Query 535 AATTTCAACTCCATTTCCGGTGTCTCTTTGGTAGCTGCCGTCATGTCTATGAGCTATTCC 594
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 AATTTCAACTCCATTTCTGGTGTCTCTTTGGTAGCTGCCGTCATGTCTATGAGCTATTCC 594
Query 595 ACAATTGCTTGGGTAGCTTCACTGACAAAGGGTGTCGCGAACAATGTTGAATATGGATAT 654
|||||||||||| |||||||||||||||||||||||| | | ||||| ||||| ||||||
Sbjct 595 ACAATTGCTTGGATAGCTTCACTGACAAAGGGTGTCGTGGAGAATGTAGAATACGGATAT 654
Query 655 -AAAAGAAGAAACAACACCTCAGTGCCATTAGCCTTCTTAGGCGCATTGGGGGAGATGGC 713
||||||| |||||| |||||||||| ||||| ||||||||| |||||||||||||||||
Sbjct 655 AAAAAGAA-AAACAATACCTCAGTGCAATTAGGCTTCTTAGGTGCATTGGGGGAGATGGC 713
Query 714 TTTTGCGTATGCAGGTCACAATGTTGTTTTAGAAATTCAAGCAACGATTCCATCAACACC 773
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 714 TTTTGCATATGCAGGTCACAACGTTGTTTTAGAAATTCAAGCAACGATTCCATCAACGCC 773
Query 774 AGAAAATCCATCAAAACGACCCATGTGGAAGGGAGCCATTGTAGCCTATATTATTGTAGC 833
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 774 AGAAAATCCATCAAAACGACCCATGTGGAAGGGAGCCATCGTAGCCTACATTATTGTAGC 833
Query 834 TTTCTGTTACTTCCCTGTGGCCCTTGTAGGGTTTTGGACATTCGGAAACAACGTTGAAGA 893
||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||| |||
Sbjct 834 TTTCTGTTACTTCCCTGTGGCTCTTGTAGGGTTTTGGATATTTGGAAACAACGTTGCAGA 893
Query 894 AAACATTCTCAAAACACTCCGGG-GCCCGAAGGGACTTATAATTGTGGCCAACATTTTTG 952
|||||||||||| | ||||||| ||| | |||||||| |||||||||||||| ||||
Sbjct 894 CAACATTCTCAAATCGCTCCGGGATCCC-ACCGGACTTATGATTGTGGCCAACATGTTTG 952
Query 953 TGATTATACATCTCATGGGAAGCTACCAGGTGTACGCAATGCCCGTGTTTGACATGATCG 1012
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 953 TGGTTATACATCTCATGGGAAGCTACCAGGTGTACGCAATGCCCGTGTTTGATATGATCG 1012
Query 1013 AATCTGTAATGATAAAGAAATGGCACTTCAGTCCAACAAGAGTTCTACGGTTTACCATCC 1072
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1013 AATCTGTAATGATAAAGAAATGGCACTTCAATCCAACAAGAGTTCTACGGTATACCATCC 1072
Query 1073 GTTGGACTTTTGTGGCCGCCACGATGGGGATAGCAGTCGCTCTACCGCATTTCAGTGCTT 1132
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1073 GCTGGACTTTTGTGGCCGCCACGATGGGGATAGCAGTCGCTCTACCATATTTCAGTGCTT 1132
Query 1133 TGCTGTCATTTTTTGGAGGATTCATATTTGCCCCGACCACATACTTTATCCCTTGCATCA 1192
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1133 TGCTGTCATTTTTTGGAGGATTCGTATTTGCCCCGACCACATACTTTATCCCTTGCATCA 1192
Query 1193 TATGGCTGATCCTGAAGAAACCAAAGAGATTTAGTCTATCATGGTGTATCAATTGGATTT 1252
||||| |||| |||| ||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1193 TATGGTTGATATTGAAAAAACCAAAGAGATTTGGTCTGTCATGGTGTATCAATTGGATTT 1252
Query 1253 GCATCATTCTTGGGGTTCTAGTGATGATTATAGCACCTATTGGGGGACTCGCCAAATTAA 1312
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1253 GCATCATTCTTGGGGTTCTAGTGATGATTATAGCACCTATTGGGGGACTCGCCAAACTAA 1312
Query 1313 TGA-ATGCTTTAAAGCAA-CCCGACTCCAGTTG 1343
| | || |||||||| || ||||||||||||||
Sbjct 1313 T-ACATACTTTAAAG-AATCCCGACTCCAGTTG 1343
> Ahg927581 jgi|Araly1|927581|scaffold_300038.1
Length=1390
Score = 1417 bits (767), Expect = 0.0
Identities = 1117/1286 (87%), Gaps = 24/1286 (2%)
Strand=Plus/Plus
Query 40 CAAGATCTTGTTGAGGATCAATCATTTGAGCTGGAAGATTGGCTTCCAATTACAGCATCA 99
||| || |||| ||||| ||||| ||||| |||||||||||||||||||| || ||||||
Sbjct 39 CAACATTTTGTGGAGGACCAATCCTTTGATCTGGAAGATTGGCTTCCAATCACCGCATCA 98
Query 100 CGAAATGCTAATTGGTACTATTCAGCTTTCCACAACGTCACTGCCATAGTTGGTGCTGGA 159
|||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 99 CGAAATGCCAATTGGTATTATTCAGCTTTCCACAACGTCACTGCCATTGTTGGTGCTGGC 158
Query 160 GTTCTTGGTCTCCCTTACGCCATGTCAGAACTTGGATGGGGACCTGGAGTTGTGGTGTTG 219
||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 159 GTTCTCGGTCTTCCTTACGCCATGTCAGAGCTTGGATGGGGACCTGGGGTTGTGGTGTTG 218
Query 220 ATCCTGTCATGGGTCATAACGTTATACACGTTCTGGCAAATGATTGAGATGCACGAAATG 279
|||||||||||||| || ||||||||||| ||||||||||||||||||||||||| |||
Sbjct 219 ATCCTGTCATGGGTGATCACGTTATACACCCTCTGGCAAATGATTGAGATGCACGAGATG 278
Query 280 TTTGAAGGGAAACGGTTTGATAGGTACCACGAGCTAGGACAAGCAGCCTTTGGCAAAAAG 339
||||| ||| |||||| ||||||||||| ||||| || || ||||||||||| |||||
Sbjct 279 TTTGAGGGGCGACGGTTCGATAGGTACCATGAGCTGGGCCAGGCAGCCTTTGGTAAAAAA 338
Query 340 CTTGGTTTGTACATCGTCGTGCCGCTTCAACTT-CTTGTTGAGA-CAAGTGCT-TGCATA 396
||||||||||||||| |||||||||| ||| || |||||||| | || ||| | ||||||
Sbjct 339 CTTGGTTTGTACATCATCGTGCCGCTACAA-TTGCTTGTTGAAATCA-GTG-TGTGCATA 395
Query 397 GTGTATATGGTGACAGGAGGTGAATCACTGAAAAA-GATTCATCAACTTTCTGTGGGAGA 455
|| ||||||||||| |||||| |||| ||||| || | | ||| | ||| | ||||||||
Sbjct 396 GTCTATATGGTGACTGGAGGTAAATCCCTGAAGAATG-TACATGACCTTGCCGTGGGAGA 454
Query 456 CT-ACGAGTGTAGAAAGTTGA-AAGTTCGACACTTCATTTTGATCTTTGCCTCTTCACAG 513
| || |||| | |||| | | || ||| |||||||||| |||||||||||||||| |||
Sbjct 455 -TGACAAGTGCACAAAGATAAGAA-TTCAACACTTCATTATGATCTTTGCCTCTTCCCAG 512
Query 514 TTTGTGCTTTCCCTTCTTAAAAATTTCAACTCCATTTCCGGTGTCTCTTTGGTAGCTGCC 573
|| ||||| ||||||||||| || |||||||||||||| |||||||| |||||||||||
Sbjct 513 TTCGTGCTCTCCCTTCTTAAGAACTTCAACTCCATTTCTGGTGTCTCCTTGGTAGCTGCT 572
Query 574 GTCATGTCTATGAGCTATTCCACAATTGCTTGGGTAGCTTCACTGACAAAGGGTGTCGCG 633
||||||||| | |||||||||||||||||||||||||| || |||| ||||||| | |
Sbjct 573 GTCATGTCTGTCAGCTATTCCACAATTGCTTGGGTAGCCTCGCTGAGGAAGGGTGCCACC 632
Query 634 AACA---A-TGTTGAATATGGATATAAAAGAAGAAACAACACCTCAGTGCCATTAGCCTT 689
| | | ||| || || || ||||||| ||||| |||| | || ||||| |||| |||
Sbjct 633 A-CGGGGAGTGTGGAGTACGGCTATAAAAAAAGAA-CAAC-C-TCCGTGCCGTTAGACTT 688
Query 690 CTTAGGCGCATTGGGGGAGATGGCTTTTGCGTATGCAGGTCACAATGTTGTTTTAGAAAT 749
|||| | ||| | |||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 689 CTTAAGTGCACTAGGGGAGATGGCTTTTGCGTACGCAGGTCATAACGTTGTTTTAGAAAT 748
Query 750 TCAAGCAACGATTCCATCAACACCAGAAAATCCATCAAAACGACCCATGTGGAAGGGAGC 809
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 TCAAGCAACGATCCCATCAACACCAGAAAATCCATCAAAACGACCCATGTGGAAGGGAGC 808
Query 810 CATTGTAGCCTATATTATTGTAGCTTTCTGTTACTTCCCTGTGGCCCTTGTAGGGTTTTG 869
| ||||||||||||| ||||||||||||| |||||||||||||| |||||||||||
Sbjct 809 CGTTGTAGCCTATATCGTTGTAGCTTTCTGCTACTTCCCTGTGGCACTTGTAGGGTTCCA 868
Query 870 GACATTCGGAAACAACGTTGAAGAAAACATTCTCAAAACACTC-CGGGGCCCGAAGGGAC 928
||| || |||||||| |||||||||||||| ||| || |||| | || ||| ||
Sbjct 869 GACTTTTGGAAACAATGTTGAAGAAAACATCCTCGAATCACTTACAAAACCAAAAGC-AC 927
Query 929 TTATAATTGTGGCCAACATTTTTGTGATTATACATCTCATGGGAAGCTACCAGGTGTACG 988
|| | ||||| |||||||| |||||| | ||||| ||| |||||||||||||||||||||
Sbjct 928 TTGTCATTGTCGCCAACATGTTTGTGGTCATACACCTCTTGGGAAGCTACCAGGTGTACG 987
Query 989 CAATGCCCGTGTTTGACATGATCGAATCTGTAATGATAAAGAAATGGCACTTCAGTCCAA 1048
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 CAATGCCCGTCTTTGACATGATCGAATCTGTAATGATAAAGAAATGGCACTTCAGTCCAA 1047
Query 1049 CAAGAGTTCTACGGTTTACCATCCGTTGGACTTTTGTGGCCGCCACGATGGGGATAGCAG 1108
||||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||| |
Sbjct 1048 CAAGAGTTCTACGCTTTACCATCCGATGGACTTTTGTGGCCGCCACAATGGGAATAGCGG 1107
Query 1109 TCGCTCTACCGCATTTCAGTGCTTTGCTGTCATTTTTTGGAGGATTCATATTTGCCCCGA 1168
||| | |||| ||| ||| || ||||||||||||||||| ||||| | || |||||||
Sbjct 1108 TCGGTTTACCTTATTACAGCGCGTTGCTGTCATTTTTTGGGGGATTTGTGTTCGCCCCGA 1167
Query 1169 CCACATACTTTATCCCTTGCATCATATGGCTGATCCTGAAGAAACCAAAGAGATTTAGTC 1228
|||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1168 CCACATACTTTATCCCATGCATCATGTGGCTGATCCTAAAGAAACCAAAGAGATTTAGTC 1227
Query 1229 TATCATGGTGTATCAATTGGATTTGCATCATTCTTGGGGTTCTAG-TGATGATTATAGCA 1287
| ||||||||||| || ||| ||||||||||||||||| || | | ||||||| ||||||
Sbjct 1228 TGTCATGGTGTATAAACTGGTTTTGCATCATTCTTGGGCTTGT-GCTGATGATCATAGCA 1286
Query 1288 CCTATTGGGGGACTCGCCAAATTAAT 1313
|||||||||||||| |||||| ||||
Sbjct 1287 CCTATTGGGGGACTGGCCAAACTAAT 1312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50741602527
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5