BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G61275.1

Length=175
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg934705 jgi|Araly1|934705|scaffold_402693.1                        198    9e-51


> Ahg934705 jgi|Araly1|934705|scaffold_402693.1
Length=211

 Score =  198 bits (107),  Expect = 9e-51
 Identities = 156/178 (88%), Gaps = 9/178 (5%)
 Strand=Plus/Minus

Query  1    TGCCTTAAACTAATGAGTAAGGAAAACAAAGCGTCCGGTGAGAACCGGTCGCGGCGCT-A  59
            |||||||||||||||||||||||||||||||||  |||||||| |||||||| ||||| |
Sbjct  195  TGCCTTAAACTAATGAGTAAGGAAAACAAAGCGAACGGTGAGAGCCGGTCGCAGCGCTAA  136

Query  60   ATCGTAAAACA--CAAAATTGGCGCAATAATTTATGGAGGGGT-TATAGGCTGG-CCGAT  115
            |||||||||||   |||| |||||||| |||||||||| ||||  |||||||||  ||| 
Sbjct  135  ATCGTAAAACATTGAAAA-TGGCGCAAGAATTTATGGAAGGGTAAATAGGCTGGTGCGA-  78

Query  116  GTGTTGACGCTGCTTACTTTTGCAGAACTCACCTCGTGCGGGCCTCCCTA-CACCCAT  172
            |||||||||||||||||||||||||||||| | | ||||||||||||| | | |||||
Sbjct  77   GTGTTGACGCTGCTTACTTTTGCAGAACTCTCTT-GTGCGGGCCTCCCCATCCCCCAT  21



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 5804615672


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5