BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61280.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907322 jgi|Araly1|907322|Al_scaffold_0002_403 551 2e-156
Ahg321630 jgi|Araly1|321630|fgenesh1_pm.C_scaffold_4001687 211 3e-54
> Ahg907322 jgi|Araly1|907322|Al_scaffold_0002_403
Length=468
Score = 551 bits (298), Expect = 2e-156
Identities = 367/400 (92%), Gaps = 5/400 (1%)
Strand=Plus/Plus
Query 19 GAAGTACACGGACCAAAAACTTCCGAGGTTTATGGTTTTGTAGGATCTATTTCGATTGTT 78
|||||||||||| ||||| ||| ||||||||||| ||||| ||||| ||||||||||||
Sbjct 70 GAAGTACACGGAACAAAACCTTGTGAGGTTTATGGATTTGTTGGATCCATTTCGATTGTT 129
Query 79 GTTGCCACTGTGATCTTCTTAATTTGGGGATATGTACCAGATAAGTTCTTAGAGTCCATA 138
|||||||||||| ||||||| ||||||| |||||||||||||||||||||||||| ||
Sbjct 130 GTTGCCACTGTGGTCTTCTTGATTTGGGCTTATGTACCAGATAAGTTCTTAGAGTCTTTA 189
Query 139 GGCATTTA-T--TACTACCCGAGCAAGTACTGGGCCATGGCGATGCCGATGTATTCGATG 195
|||||||| | ||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 190 GGCATTTATTACTACTACCCGAGCAAGTACTGGGCTATGGCGATGCCGATGTATTTGATG 249
Query 196 GTGACTCTGTTAGTAGCTTTGGTGTTTTACATTGGTCTCAACTTCATGTCTACTTCAAAA 255
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 250 GTGACTCTGTTCTTAGCTTTAGTGTTTTACATTGGTCTCAACTTCATGTCTACTTC-AAC 308
Query 256 C-CAACCTCTCTCAATACTTTGTTTGATGACTACAGTAGAGAAGATGTGAATTTTCTTCC 314
| |||||||| |||||||| |||||||||| ||||| |||||||||||| |||||||| |
Sbjct 309 CTCAACCTCTTTCAATACTCTGTTTGATGAGTACAGCAGAGAAGATGTGGATTTTCTTTC 368
Query 315 TTTGATGAAGAATGGGGAAGACAGGCCAATAGATCCAATCTCTGACATTGATATTACAAG 374
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 369 TTTGATGAAGAATGGGGATGATAGGCCAATAGATCCAATCTCTGACATTGATATTACAAG 428
Query 375 AATCAACGATCTTATGTTCGATTCACATCTTGCCAAGTGA 414
||||||||||||||||||||||||||| ||||||||||||
Sbjct 429 AATCAACGATCTTATGTTCGATTCACACCTTGCCAAGTGA 468
> Ahg321630 jgi|Araly1|321630|fgenesh1_pm.C_scaffold_4001687
Length=2160
Score = 211 bits (114), Expect = 3e-54
Identities = 192/228 (84%), Gaps = 12/228 (5%)
Strand=Plus/Plus
Query 178 ATGCCGATGTATTCGATGGTGA-CTCTGTTAG-TAGCTTTGG-TGTTTTACATTGGTCTC 234
||||||| ||||| | |||||| || || | | ||||||||| | |||||||||||||||
Sbjct 1 ATGCCGACGTATTTGGTGGTGACCT-TGAT-GTTAGCTTTGGCT-TTTTACATTGGTCTC 57
Query 235 AACTTCAT-GTCTACTTCAAAACCAACCTCTCTCAATACTTTGTTTGATGACTACAGTAG 293
|||||||| | | ||| || ||||||||||||||||| ||||||||||| ||||||||
Sbjct 58 AACTTCATCG-CCACTCCACCCCCAACCTCTCTCAATACCTTGTTTGATGAGTACAGTAG 116
Query 294 AGAAGAT-GTGAATTTTCTTCCTTTGAT-GAAGAATGGGGAAGACAGGCCAATAGATCCA 351
|||| | | ||| ||| | || ||| || ||| || ||||||||||| |||||||||
Sbjct 117 AGAACCTGGGGAA-TTTGATGCTGGGATGGAGGAA-GGTGAAGACAGGCCTATAGATCCA 174
Query 352 ATCTCTGACATTGATATTACAAGAATCAACGATCTTATGTTCGATTCA 399
||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 175 ATCTCTGACATTGATATTACAAGAATCAATGATCTTATGTTCAATTCA 222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14880679710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5