BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G61290.1 Length=1091 Score E Sequences producing significant alignments: (Bits) Value Ahg315228 jgi|Araly1|315228|fgenesh1_pm.C_scaffold_2000261 1524 0.0 > Ahg315228 jgi|Araly1|315228|fgenesh1_pm.C_scaffold_2000261 Length=912 Score = 1524 bits (825), Expect = 0.0 Identities = 883/912 (97%), Gaps = 0/912 (0%) Strand=Plus/Plus Query 180 ATGAATGATTTATTCTCTAGTTCGTTCAAGAAGTACACGGACCTGAAGCAACAGGCCCAA 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAATGATTTATTCTCTAGTTCGTTCAAGAAGTACACGGACCTGAAGCAACAGGCCCAA 60 Query 240 ATGGATGATATTGAGTCAGGTAAAGAGACGATGAACCTCGATAAGTTCTTTGAGGATGTC 299 ||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 61 ATGGATGATGTTGAGGCAGGTAAAGAGACGATGAACCTCGATAAATTCTTTGAGGATGTC 120 Query 300 GAAAATGTCAAAGATAACATGAAAGGCGTAGAGACTCTTTACAAGAGTCTTCAGGATTCT 359 ||||||||||||||| ||||||||| |||||||||||||||||| || ||||||||||| Sbjct 121 GAAAATGTCAAAGATGACATGAAAGCCGTAGAGACTCTTTACAAAAGCCTTCAGGATTCG 180 Query 360 AACGAAGAGTGCAAAACTGTACACAATGCCAAGAAGGTGAAGGAACTCCGAGCAAAGATG 419 |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 181 AACGAAGAATGCAAAACGGTACACAATGCCAAGAAAGTGAAGGAACTCCGAGCAAAGATG 240 Query 420 GATGGAGATGTCGCTCAGGTCCTCAAGAGAGTCAAGATGATCAAACAAAAGCTTGAGGCG 479 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 241 GATGGAGATGTCGCTCAGGTCCTCAAGAGAGTCAAGATCATCAAACAAAAGCTTGAGGCG 300 Query 480 CTTGAAAAAGCAAATGCTAATAGCCGTAATGTCTCTGGTTGTGGCCCTGGCTCTTCCACC 539 ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 301 CTTGAAAAAGCGAATGCTAATAGCCGTAATGTCCCTGGTTGTGGCCCTGGCTCTTCCACC 360 Query 540 GATAGGACCAGGACGTCTGTTGTTAGTGGACTCGGGAAAAAGCTTAAGGACTTGATGGAT 599 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 361 GATAGGACCAGGACGTCTGTTGTTAGCGGACTCGGGAAAAAGCTTAAGGACTTGATGGAT 420 Query 600 AGTTTTCAAGGTCTGCGTGCGCGGATGAACGCTGAGTATAAAGAAACCGTAGAGCGCAGA 659 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 421 AGTTTTCAAGGTCTGCGTGCGCGGATGAATGCTGAGTATAAAGAAACCGTAGAACGCAGA 480 Query 660 TATTTCACGATAACCGGAGAACAGGCAGACGAACAGACGATTGAGAACTTGATTTCGAGT 719 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TATTTCACGATAACCGGAGAACAGGCAGACGAACAGACGATTGAGAACTTGATTTCGAGC 540 Query 720 GGTGAAAGCGAGAATTTTCTTCAGAAAGCAATACAAGAACAAGGGAGAGGCCAAATATTA 779 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 541 GGTGAAAGCGAGAATTTTCTTCAGAAAGCGATACAAGAACAAGGGAGAGGCCAAATATTA 600 Query 780 GACACTATATCAGAGATTCAAGAGAGACACGACGCGGTCAAAGAGATAGAGAAGAATCTT 839 ||||| |||||||||||||||||||| |||||||| || ||||||||||||||||||||| Sbjct 601 GACACCATATCAGAGATTCAAGAGAGGCACGACGCAGTGAAAGAGATAGAGAAGAATCTT 660 Query 840 ATAGAGCTTCACCAAGTGTTCTTAGACATGGCGGCTCTGGTGGAATCACAAGGTCAGCAA 899 ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 661 ATAGAGCTTCACCAAGTGTTCCTAGACATGGCGGCTCTGGTGGAAGCACAAGGTCAGCAA 720 Query 900 CTAAATGACATAGAAAGCCACGTCTCGAAGGCGAGCTCGTTCGTGAGAAGAGGGACAGAC 959 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 721 CTAAATGACATAGAAAGCCACGTGTCAAAGGCGAGCTCGTTCGTGAGAAGAGGGACAGAC 780 Query 960 CAGCTTCAAGATGCAAGAGAATACCAAAAGAGCTCGAGGAAATGGACTTGTTATGCCATT 1019 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 781 CAGCTTCAAGATGCAAGAGAGTACCAAAAGAGCTCGAGGAAATGGACTTGTTATGCCATT 840 Query 1020 CTTCTCTTCATAGTCGTTTTCGCTTTGCTTCTCATACCAGCCTTACCTCATATCATGCTC 1079 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 841 CTTCTCTTCATAGTCGTTTTCGCTTTGCTTCTCATACCAGCCTTGCCTCATATCATGCTC 900 Query 1080 ATGTTGAAGTGA 1091 |||||||||||| Sbjct 901 ATGTTGAAGTGA 912 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40639029522 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5