BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61290.1
Length=1091
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315228 jgi|Araly1|315228|fgenesh1_pm.C_scaffold_2000261 1524 0.0
> Ahg315228 jgi|Araly1|315228|fgenesh1_pm.C_scaffold_2000261
Length=912
Score = 1524 bits (825), Expect = 0.0
Identities = 883/912 (97%), Gaps = 0/912 (0%)
Strand=Plus/Plus
Query 180 ATGAATGATTTATTCTCTAGTTCGTTCAAGAAGTACACGGACCTGAAGCAACAGGCCCAA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAATGATTTATTCTCTAGTTCGTTCAAGAAGTACACGGACCTGAAGCAACAGGCCCAA 60
Query 240 ATGGATGATATTGAGTCAGGTAAAGAGACGATGAACCTCGATAAGTTCTTTGAGGATGTC 299
||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 ATGGATGATGTTGAGGCAGGTAAAGAGACGATGAACCTCGATAAATTCTTTGAGGATGTC 120
Query 300 GAAAATGTCAAAGATAACATGAAAGGCGTAGAGACTCTTTACAAGAGTCTTCAGGATTCT 359
||||||||||||||| ||||||||| |||||||||||||||||| || |||||||||||
Sbjct 121 GAAAATGTCAAAGATGACATGAAAGCCGTAGAGACTCTTTACAAAAGCCTTCAGGATTCG 180
Query 360 AACGAAGAGTGCAAAACTGTACACAATGCCAAGAAGGTGAAGGAACTCCGAGCAAAGATG 419
|||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 AACGAAGAATGCAAAACGGTACACAATGCCAAGAAAGTGAAGGAACTCCGAGCAAAGATG 240
Query 420 GATGGAGATGTCGCTCAGGTCCTCAAGAGAGTCAAGATGATCAAACAAAAGCTTGAGGCG 479
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 GATGGAGATGTCGCTCAGGTCCTCAAGAGAGTCAAGATCATCAAACAAAAGCTTGAGGCG 300
Query 480 CTTGAAAAAGCAAATGCTAATAGCCGTAATGTCTCTGGTTGTGGCCCTGGCTCTTCCACC 539
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 301 CTTGAAAAAGCGAATGCTAATAGCCGTAATGTCCCTGGTTGTGGCCCTGGCTCTTCCACC 360
Query 540 GATAGGACCAGGACGTCTGTTGTTAGTGGACTCGGGAAAAAGCTTAAGGACTTGATGGAT 599
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 GATAGGACCAGGACGTCTGTTGTTAGCGGACTCGGGAAAAAGCTTAAGGACTTGATGGAT 420
Query 600 AGTTTTCAAGGTCTGCGTGCGCGGATGAACGCTGAGTATAAAGAAACCGTAGAGCGCAGA 659
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 421 AGTTTTCAAGGTCTGCGTGCGCGGATGAATGCTGAGTATAAAGAAACCGTAGAACGCAGA 480
Query 660 TATTTCACGATAACCGGAGAACAGGCAGACGAACAGACGATTGAGAACTTGATTTCGAGT 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TATTTCACGATAACCGGAGAACAGGCAGACGAACAGACGATTGAGAACTTGATTTCGAGC 540
Query 720 GGTGAAAGCGAGAATTTTCTTCAGAAAGCAATACAAGAACAAGGGAGAGGCCAAATATTA 779
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 541 GGTGAAAGCGAGAATTTTCTTCAGAAAGCGATACAAGAACAAGGGAGAGGCCAAATATTA 600
Query 780 GACACTATATCAGAGATTCAAGAGAGACACGACGCGGTCAAAGAGATAGAGAAGAATCTT 839
||||| |||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 601 GACACCATATCAGAGATTCAAGAGAGGCACGACGCAGTGAAAGAGATAGAGAAGAATCTT 660
Query 840 ATAGAGCTTCACCAAGTGTTCTTAGACATGGCGGCTCTGGTGGAATCACAAGGTCAGCAA 899
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 661 ATAGAGCTTCACCAAGTGTTCCTAGACATGGCGGCTCTGGTGGAAGCACAAGGTCAGCAA 720
Query 900 CTAAATGACATAGAAAGCCACGTCTCGAAGGCGAGCTCGTTCGTGAGAAGAGGGACAGAC 959
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 721 CTAAATGACATAGAAAGCCACGTGTCAAAGGCGAGCTCGTTCGTGAGAAGAGGGACAGAC 780
Query 960 CAGCTTCAAGATGCAAGAGAATACCAAAAGAGCTCGAGGAAATGGACTTGTTATGCCATT 1019
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 781 CAGCTTCAAGATGCAAGAGAGTACCAAAAGAGCTCGAGGAAATGGACTTGTTATGCCATT 840
Query 1020 CTTCTCTTCATAGTCGTTTTCGCTTTGCTTCTCATACCAGCCTTACCTCATATCATGCTC 1079
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 841 CTTCTCTTCATAGTCGTTTTCGCTTTGCTTCTCATACCAGCCTTGCCTCATATCATGCTC 900
Query 1080 ATGTTGAAGTGA 1091
||||||||||||
Sbjct 901 ATGTTGAAGTGA 912
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40639029522
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5