BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61310.1
Length=2881
Score E
Sequences producing significant alignments: (Bits) Value
Ahg338250 jgi|Araly1|338250|fgenesh1_pg.C_scaffold_2000349 1284 0.0
Ahg924912 jgi|Araly1|924912|scaffold_200473.1 257 3e-67
Ahg338119 jgi|Araly1|338119|fgenesh1_pg.C_scaffold_2000218 100 5e-20
> Ahg338250 jgi|Araly1|338250|fgenesh1_pg.C_scaffold_2000349
Length=2739
Score = 1284 bits (695), Expect = 0.0
Identities = 1193/1428 (84%), Gaps = 55/1428 (4%)
Strand=Plus/Plus
Query 1 ATGGGGAGTTGTTTTTCTTTTCAAATTGCTGTTGGTGATCAAACGATGAATCGTATCTTT 60
||||||| | || | ||||| ||| || | || | ||||||||| |||||| ||||||
Sbjct 1 ATGGGGAATGGTGTGTCTTTCCAACTT--TCTT-GCGATCAAACGCTGAATCACATCTTT 57
Query 61 -GATTGCTTAAT-TGGTAAAAGTTATATTCGAACCCTCGAGCAGAATCTCAGAG-CTCTG 117
|| || || | ||||||| |||||||||||| |||| || ||||||||| || || ||
Sbjct 58 AGA-TGGTT-TTGTGGTAAAGGTTATATTCGAAACCTCAAGGAGAATCTCACAGCCT-TG 114
Query 118 CAGAGGGAAATGGAAGATCTGAGAGCAACT-CAACATGAGGTACAGAACAAG-GTAGCGA 175
||||||||||||||||||| | ||||| | || ||||||| |||||| || ||| ||
Sbjct 115 AAGAGGGAAATGGAAGATCTCAAAGCAA-TAAAAGATGAGGTGCAGAAC-AGAGTATTGA 172
Query 176 GAGAGGAG-TCACGCCATCAACAAAGGCTTGAAGCTGTCCAGGTATGGCTTGA-CCGTGT 233
|||||||| | ||| ||||||||||| |||||||||||||||||||||||| | ||||||
Sbjct 173 GAGAGGAGAT-ACGACATCAACAAAGACTTGAAGCTGTCCAGGTATGGCTT-ACCCGTGT 230
Query 234 CAATAGCATTGATATA-GAGTGCAAAGATCTGCTAAGT-GTTAGTCCCGTTGAGCTTCAA 291
| ||||||||||| || | | |||| |||| || ||| || |||||||| |||| ||
Sbjct 231 CGATAGCATTGATTTACAAAT-CAAAAATCTACTTAGTACTT-GTCCCGTTCAGCTCCAG 288
Query 292 AAGTTGTGTCTCTGCGGTTTGTGTACAAAATATGTATGTTCAAGCTACAAATATGGGAAA 351
||||||||||| || ||||| ||| ||||| |||||||||| ||||||| |||||||||
Sbjct 289 AAGTTGTGTCTTTGTGGTTTATGTTCAAAAAATGTATGTTCGAGCTACAGTTATGGGAAA 348
Query 352 AAGGTATTCTTGTTACTGGAAGAGGTTAAGATACTAAAATCGGAGGGAAATTTTGACGAA 411
| |||||||||||| |||| |||||||||| ||| || || ||| | |||||||| |
Sbjct 349 AGGGTATTCTTGTTGTTGGACGAGGTTAAGAAACTCAACTCAGAGAGTAATTTTGAAGTG 408
Query 412 GTTTCTCAGCC-ACCTCCAAGATCTGAAGTTGAAGA-GAGGCCTACTCAGCCTACGATAG 469
||| || |||| || || | ||||||||||| ||| |||| |||||||||||| || |
Sbjct 409 GTTACTAAGCCTGCC-CCGATATCTGAAGTTG-AGATGAGGTTTACTCAGCCTACTATTG 466
Query 470 GTCAAGAAGAA-ATGCTCGAAA-AGGCATGGAACCGCCTTATGGAAGATGGAGTCGGAAT 527
|||| ||| || |||||||||| | |||||||| |||||||| |||||||||||||||||
Sbjct 467 GTCAGGAA-AAGATGCTCGAAACA-GCATGGAATCGCCTTATAGAAGATGGAGTCGGAAT 524
Query 528 CATGGGTCTGCACGGTATGGGTGGTGTAGGCAAAACAACCCTTTTCAAGAAAATCCACAA 587
||||||| ||||||| |||||||||||||| ||||| ||||||||| | |||||||||||
Sbjct 525 CATGGGTTTGCACGGCATGGGTGGTGTAGGAAAAACTACCCTTTTCCATAAAATCCACAA 584
Query 588 CAAGTTCGCTGAAATAGGTGGTACG-TTTGACATTGTGATCTGGATCGTGGTGTCTCAAG 646
||||| ||||||||| ||||| | |||||| ||||||| ||||| |||||||| ||||
Sbjct 585 TAAGTTTGCTGAAATACCTGGTA-GATTTGACGTTGTGATATGGATTGTGGTGTCGCAAG 643
Query 647 GCGCAAAGCTTTCAAAGCTTCAAGAAGATATTGCAGAGAAA-CTGCACCTTTGTGACGAC 705
| ||| || |||||||||||||||||||||||||| | ||| || |||||||| |||||
Sbjct 644 GTGCAGAGATTTCAAAGCTTCAAGAAGATATTGCA-AAAAAGCTACACCTTTGCGACGAG 702
Query 706 CTGTGGAAGAACAAGAA-TGAAAGTGATAAGGCCACTGATATACACAGA-GTTTTAAAG- 762
|||||||| | || || |||||||| ||| ||| |||||||||||| | |||||| ||
Sbjct 703 GTGTGGAAGGATAA-AACTGAAAGTGTTAACGCCGCTGATATACACA-ATGTTTTACAGA 760
Query 763 GGAAAGAGATTTGTTTTGATGCTAGATGATATATGGGAGAAAGTGGATTTAGAGGCCATT 822
|| |||||||||||||||||| |||||||||||||||| |||||||||||| | ||| |
Sbjct 761 GG-AAGAGATTTGTTTTGATGTTAGATGATATATGGGACAAAGTGGATTTACAAGCCCTC 819
Query 823 GGTA-TTCCCTA-TCCGAGTGA-AGTAAATAAATGCAAAGTAGCATTCACGACACGTTCT 879
|| | || || | ||||| | || |||| ||||| |||||||||||| || |||||
Sbjct 820 GG-AGTT-CCAATTCCGA-CCAGAGAAAATGGATGCAGAGTAGCATTCACCACTCGTTCC 876
Query 880 CGGGAAGTTTGTGGG-GAGATGGGGGATCAT-AAGCCGATGCAAG-TCAACTGTTTGGAA 936
|| ||||| |||||| | ||||||||||||| || || ||| ||| |||| ||||||| |
Sbjct 877 CGAGAAGTATGTGGGCG-GATGGGGGATCATGAA-CCAATGGAAGTTCAA-TGTTTGGGA 933
Query 937 CCAGAGGATGCATGGGAGTTGTTCAAAAACAAGGTCGGAGACAACACATTAAGTAGTGAT 996
||| |||| |||||||| ||||| || |||||||||||||||||||||||||| || |||
Sbjct 934 CCAAAGGAAGCATGGGAATTGTTTAAGAACAAGGTCGGAGACAACACATTAAGAAGAGAT 993
Query 997 CCTGTTATTGT-GGGGTTGGCAAGAGAGGTGGCTCAAAAATGTCGTGGTCTGCCATTGGC 1055
||||| ||||| | | || |||||| |||| ||| |||||||||||||||||||| | ||
Sbjct 994 CCTGTCATTGTCGAGCTT-GCAAGAAAGGTCGCTGAAAAATGTCGTGGTCTGCCACTAGC 1052
Query 1056 GCTCAACGTCATTGGTGAGACAATGGCATCTAAAACTATGGTACAAGAATGGGAGTATGC 1115
|||||| |||||||||||| | ||||||||||||||||||||||||||||||||| ||||
Sbjct 1053 GCTCAATGTCATTGGTGAGGCGATGGCATCTAAAACTATGGTACAAGAATGGGAGGATGC 1112
Query 1116 AATCGATGTTTTGACTAGATCCGCTGCAGAGTTTTCTGGCATGGAAAACAAAATTCTTCC 1175
||||||||||||||| | |||||| ||||||||| ||| | | |||| |||||||||||
Sbjct 1113 AATCGATGTTTTGACAACATCCGCCGCAGAGTTTCCTGACGTCAAAAATAAAATTCTTCC 1172
Query 1176 GATTCTCAAGTACAGCTACGATAGCTTGGGGGATGAACATATCAAGTCGTGTTTCCTATA 1235
||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 1173 AATTCTAAAGTACAGCTACGATAGCTTGGTGGATGAACATATCAAGAAATGTTTCCTATA 1232
Query 1236 TTGTGCTCTGTTTCCTGAAGATGGTCAGATATATACCGAAACCTTGATAGACAAATTGAT 1295
||||||||| ||||| |||||| | | ||| ||| ||||| ||||||||| | | |||
Sbjct 1233 TTGTGCTCTCTTTCCGGAAGATTATAATATAAATATGGAAACGTTGATAGACTACTGGAT 1292
Query 1296 ATGCGAAGGATTCATCGGAGAAGAC-CAAGTTATAAAAAGAGCGAGGAATAAGGGTTATG 1354
||||||||||||||| ||||| || | ||||||||||||||||||||||||||||||
Sbjct 1293 ATGCGAAGGATTCATTGGAGACTACTCT-GTTATAAAAAGAGCGAGGAATAAGGGTTATA 1351
Query 1355 CGATGCTCGGTACCCTTACCCGTGCAAACTTGCTAACAAAGGTTGGTA 1402
||||||| |||||||||| ||||||||| || || || |||||||||
Sbjct 1352 CGATGCTTGGTACCCTTATCCGTGCAAATTTACTGACGGAGGTTGGTA 1399
Score = 590 bits (319), Expect = 2e-167
Identities = 524/621 (84%), Gaps = 21/621 (3%)
Strand=Plus/Plus
Query 1410 TGCTAATTTACTAACAAAGGTTAGT-ATATATCATTGTGTGATGCATGACGTGGTTCGTG 1468
||| |||||||| || ||||| || | | ||| | ||||||||||||||||||||| |
Sbjct 1374 TGCAAATTTACTGACGGAGGTTGGTAAAACATCGGT-TGTGATGCATGACGTGGTTCGCG 1432
Query 1469 AAATGGCTTTATGGATTGCTTCCGATTTTGGGAAACAGAAAGAGAATTTTGTTGTGCAAG 1528
|||||||| |||||||||| |||||||||||||||||||| ||||||||||| |||| ||
Sbjct 1433 AAATGGCTCTATGGATTGCATCCGATTTTGGGAAACAGAAGGAGAATTTTGTGGTGCGAG 1492
Query 1529 CAAGTGCCGGGTTACATGAAATACCAGAAGTCAAGGATTGGGGAGCTGTAAGAAGGATGT 1588
|| | | ||| |||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1493 CAGGAGTCGGATTACATGAAATACCAGAAGTCAAGGATTGGGGAGCTGTGAGAAGAATGT 1552
Query 1589 CATTAATGAGGAATGAA-ATTGAAGAGATAACATGCGAGT-CCAAGTGTTCTGAACTTAC 1646
||||||||| |||| || ||| ||||||||||||| | || |||||||||||||||||||
Sbjct 1553 CATTAATGAAGAAT-AATATTAAAGAGATAACATGTG-GTTCCAAGTGTTCTGAACTTAC 1610
Query 1647 AACTTTGTTCCTTCAA-AGTAATCAATTGAAGAATCTATCAGGTGAATTCATTCGGTATA 1705
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1611 AACTTTGTTCCTTCAAGAG-AATCAATTGAAGAATCTATCAGGTGAATTCATTCGGTTTA 1669
Query 1706 TGCAAAAGCTAGTTGTTTTGGATCTTTCA-GATAATCGTGACTTCAATGAACTTCCAGAG 1764
||||||||||||||||||||||||| ||| | ||||| |||||| |||||||||||||
Sbjct 1670 TGCAAAAGCTAGTTGTTTTGGATCTGTCATGG-AATCGCAACTTCAGTGAACTTCCAGAG 1728
Query 1765 CAGATATCGGGGCTAGTCTCGTTGCAGTATCTTGACTTGTCGTTTACAAGA-ATAGAGCA 1823
|||||||| | ||| | ||| ||||||||||||||||||||| ||||| | ||||||||
Sbjct 1729 CAGATATCAGAGCTGGCCTCCTTGCAGTATCTTGACTTGTCGGGTACAA-ATATAGAGCA 1787
Query 1824 ACTGCCTGTTGGCCTCAAAGAGTTGAAAAAGCTAACTTTCCTAGATTTG-GCTTATAC-T 1881
|||||||||||| || | ||||||||||| ||||| || |||||| | | |||| |
Sbjct 1788 ACTGCCTGTTGGTTTCCATGAGTTGAAAAATTTAACTCAACTGGATTTGAG-TAATACAT 1846
Query 1882 GCGCGACTTTGTAGTATCAGTGGGATATCAAGGTTGTTGAGTTTAAGAGTGTTGAGCCTG 1941
| | | || ||| | ||| |||||||| ||||| |||||||||| | |||| ||
Sbjct 1847 -CA--A-TCTGCAGTGTGGGTGCGATATCAAAGTTGTCGAGTTTAAGAATTTTGAAACTA 1902
Query 1942 CTAGGGTCTAAAGTTCATGGAGATGCTA-GCGTATTGAAGGAGCTGCAGCAATTGGAGAA 2000
||| ||||| ||||||| |||| || || || |||| |||||||||| |||||| |
Sbjct 1903 AAAGGTTCTAATGTTCATGCCGATG-TAAGCTTAGTGAAAGAGCTGCAGCTCTTGGAGCA 1961
Query 2001 TCTACAAGATCTAGCCATAAC 2021
|||||||| |||| |||||||
Sbjct 1962 TCTACAAGTTCTAACCATAAC 1982
Score = 379 bits (205), Expect = 5e-104
Identities = 456/570 (80%), Gaps = 45/570 (8%)
Strand=Plus/Plus
Query 2098 CAAAAGCCATTCGATTTATCATTCCTGGCGAGTATGGAGAATCTTAGTTCCCT-ATGGGT 2156
|||||| || || || ||||||| ||| ||||||||||||||||| ||| || || |||
Sbjct 2137 CAAAAGGCAATCAATATATCATTGCTGACGAGTATGGAGAATCTTCGTTTGCTCAT-GGT 2195
Query 2157 GAAAAATAGTTAT-TTCTC-G-GA--GAT---AA----A-GTGCAGAGAAAGCGAGACAG 2203
| | |||||| || || || | || || || | ||||| ||||| | ||||||
Sbjct 2196 GGAGAATAGTCATGTT-TCAGAGATTAATACAAATCTGATGTGCATAGAAAACAAGACAG 2254
Query 2204 ACTCGTCTTATTTACACATCAATCCGAAAATTCCATGCTTTACCAACCTCTC-AC-GACT 2261
|||||||| |||| ||| ||||||||||||||||||||||||||||||||| || | |
Sbjct 2255 ACTCGTCTGATTT--ACA-CAATCCGAAAATTCCATGCTTTACCAACCTCTCCACCGTGT 2311
Query 2262 GGATATA-GTGAAGTGCCATAGCATGAAGGATCTGACTTGGATAT-TGTTTGCTCCAAAT 2319
| ||| | || ||||||||||| ||||||||||||||| | | ||||||||||||||
Sbjct 2312 GTATA-ACGTCC--TGCCATAGCATTAAGGATCTGACTTGGCT-TCTGTTTGCTCCAAAT 2367
Query 2320 CTTGTCGTGC-TATTCATTGAAGATTCAAGAGAAGTGGGAGAAATAATAAACAAAGAGAA 2378
|||||| | | || |||| ||||||||||||||||| |||||| ||||||||||||||
Sbjct 2368 CTTGTC-TACCTACGCATTTCAGATTCAAGAGAAGTGGAAGAAATTATAAACAAAGAGAA 2426
Query 2379 AGCAACCAATCTTACAAGTATTACACCATTTCTGAAACTAGAAAGGTTGATTTTGTGTTA 2438
|||||||||||||||| ||||||||||||||| |||||||||| || | | || | |
Sbjct 2427 AGCAACCAATCTTACAGGTATTACACCATTTCAGAAACTAGAATTCTTCAGTGTG-GAAA 2485
Query 2439 TT-TGCCGAAGCTGGAGAGTATCTACTGGAGTCCTCTCCCCTTTCCGCTT-TTGTTGAAC 2496
||||||||||||||||||||||| ||||||||| |||||||| || ||| | ||
Sbjct 2486 AACTGCCGAAGCTGGAGAGTATCTACAAGAGTCCTCTTCCCTTTCCA-TTATTGAAGCAC 2544
Query 2497 ATAGATGTTGAAGAATG-T-CC-AAAGCTGAGAAAGCTTCCATTAAATGCTACAAGTGCT 2553
||| | ||| | | || | || |||||||||||||||||| |||||||||||||||| |
Sbjct 2545 ATA--T-TTGCATATTGCTGCCCAAAGCTGAGAAAGCTTCCCTTAAATGCTACAAGTGTT 2601
Query 2554 CCAAAAGTTGAAGAGTTTCGAATACTTATGTATCCTCCAGAA-CT----T-GAATGGGAG 2607
||| |||||| || ||| |||| ||| || | | |||| || | |||||||||
Sbjct 2602 CCACTAGTTGATGAATTTAAAATAGAGATGGATTCGCAAGAAACTGAGCTTGAATGGGAG 2661
Query 2608 GACGAAGATACCAAAAATCGATTCTTGCCT 2637
|||||||||||||||||||| |||||||||
Sbjct 2662 GACGAAGATACCAAAAATCGTTTCTTGCCT 2691
> Ahg924912 jgi|Araly1|924912|scaffold_200473.1
Length=325
Score = 257 bits (139), Expect = 3e-67
Identities = 238/282 (84%), Gaps = 22/282 (8%)
Strand=Plus/Plus
Query 2281 AGCATGAAGGATCTGACTTGGATATTGTTTGCTCCAAATCTTGTCGTGCTATTC-A-TTG 2338
||||||||||||||||||||| |||||||||||||||||||||| || | | | | ||
Sbjct 18 AGCATGAAGGATCTGACTTGGCTATTGTTTGCTCCAAATCTTGT-GT-CCCTACAATTTC 75
Query 2339 AAGATTCAAGA-GAAGTGGGAGAAATAATAAACAAAGAGAAAGCAACCAATCTTACAAG- 2396
|| |||| ||| ||||||| |||||| |||||||||||||||||||||||||||||| |
Sbjct 76 AATATTC-AGATGAAGTGGAAGAAATTATAAACAAAGAGAAAGCAACCAATCTTACA-GC 133
Query 2397 TATTACACCATTTCTGAAACTAGAAAGGTTGAT-TTTGTGTT-ATTTGCCGAAGCTGGAG 2454
|||| ||||||||| |||||||||||| || || |||| ||| ||||||| |||||||||
Sbjct 134 TATTTCACCATTTCAGAAACTAGAAAGCTT-ATATTTG-GTTTATTTGCCTAAGCTGGAG 191
Query 2455 AGTATCTACTGGAGTCCTCTCCCCTTTCCGCTT-TTGTTGAACATAGA-TGT-TGAA-GA 2510
||||||||| ||||||||| |||||||| || ||| | ||||| | || | | |
Sbjct 192 AGTATCTACAAGAGTCCTCTTCCCTTTCCA-TTATTGAAGCACATA-ACTGCAT-ATCGC 248
Query 2511 ATGTCCAAAGCTGAGAAAGCTTCC-ATTAAATGCTACAAGTG 2551
||||||||||||||||||||||| || ||||||||||||||
Sbjct 249 -TGTCCAAAGCTGAGAAAGCTTCCCAT-AAATGCTACAAGTG 288
> Ahg338119 jgi|Araly1|338119|fgenesh1_pg.C_scaffold_2000218
Length=3012
Score = 100 bits (54), Expect = 5e-20
Identities = 119/150 (79%), Gaps = 6/150 (4%)
Strand=Plus/Plus
Query 1450 ATGCATGACGTGGTTCGTGAAATGGCTTTATGGATTGCTTCCGATTTTGGGAAA-CAGAA 1508
|||||||| || ||||||||||||||||||||||||||||| || | |||||| || ||
Sbjct 1429 ATGCATGATGTTGTTCGTGAAATGGCTTTATGGATTGCTTCTGAACT-GGGAAAACAAAA 1487
Query 1509 AGAGAATTTTGTTGTGCAAGCAAGTGCCGGGTTACATGAAATACCAGAAG-TCAAGGATT 1567
|||| || |||||| ||| ||| || |||| |||||| ||| ||| | ||| |||
Sbjct 1488 AGAGGCCTTCATTGTGCGTGCAGGTGTTGGCTTACCTGAAATTCCA-AAGGTTAAGAATT 1546
Query 1568 GGGGA-GCTGTAAGAAGGATGTCATTAATG 1596
|| | ||||| ||||||||||| || |||
Sbjct 1547 GGA-ATGCTGTGAGAAGGATGTCGTTGATG 1575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108747649475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5