BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61320.1
Length=1515
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907319 jgi|Araly1|907319|Al_scaffold_0002_400 883 0.0
Ahg924899 jgi|Araly1|924899|scaffold_200460.1 725 0.0
Ahg916376 jgi|Araly1|916376|Al_scaffold_0008_1127 115 9e-25
> Ahg907319 jgi|Araly1|907319|Al_scaffold_0002_400
Length=1338
Score = 883 bits (478), Expect = 0.0
Identities = 1108/1396 (79%), Gaps = 107/1396 (8%)
Strand=Plus/Plus
Query 34 ATGGCAGAATCATCAAATAAG-AGGATGAAACCT-AGTGAAACG-GTTCCTGAAGATGTG 90
||| ||||||| ||||||||| | ||||||| || | | ||| | ||||||| ||| ||
Sbjct 1 ATGTCAGAATCCTCAAATAAGCA-GATGAAA-CTCA-TCAAAAGAATTCCTGATGATTTG 57
Query 91 TTGGAACT-CATGATGTCTACGTATCTTCCCGTCCAATCTCTGTTA-ACAACTCGTGTGT 148
||| | | ||| |||| | | |||||| |||||||||| ||| | ||| ||||| |
Sbjct 58 GTGG-AGTGCATCTTGTC-A--TTTCTTCCAATCCAATCTCTTTTACAAAAC-CGTGTTT 112
Query 149 TGTCCAAAAGATTTCGCGAGAC-CGA-GG-TACGTTCTCTTGACCTCGA-TTTCAGTGGA 204
|||| || |||||| | | ||| | | || || |||| |||||||| ||| | | |
Sbjct 113 TGTCGAAGAGATTTAG-G-GACAC-ATGGAAACAATCTCGCGACCTCGACTTT-GGCGAA 168
Query 205 ATATATTCTAG-AAGACGTCGTAAAGTAGAAGTTGTTGGCATCATCGAAAA-AGTGTTCA 262
|| | |||| | |||| | || || |||| | ||| |||| |||||||| | | || |
Sbjct 169 ATGTTTTCT-GTCAGACATAGTCAACTAGAGGCTGTACGCATAATCGAAAACA-TTTTTA 226
Query 263 ATCAACATAAAGGATCAGAGATTCACCGATTCGTTCTACT-TCTCAATCATATTGGGGTA 321
|||| || |||||| |||||||| ||||||| ||| | | |||||| ||||| || ||
Sbjct 227 ATCAGCACAAAGGACCAGAGATTAACCGATTTGTT-TTGTCTCTCAACCATATCGGTGTG 285
Query 322 GAAGATAAAATCA-TCTCATGGACCAATACATGT-TTTGACAAAAACATCAAGGAGCTTG 379
|| ||||| || | | || |||| || ||| ||| || | ||||||||||| |||||||
Sbjct 286 GAGGATAAGAT-ACTTTCGTGGATCAGTACGTGTCTTCG-TAAAAACATCAAAGAGCTTG 343
Query 380 T-CTTAGATTTTTCAAAAT-CTAGAAAAGTTATGGCCATCCCCA-TTGATTTCTCGGCTG 436
| | ||||||| || | || | || |||||||||| || |||| | ||||||||| |
Sbjct 344 TGC-TAGATTTCTCGAGATCCAAG-AAAGTTATGGTGAT-CCCAGTCGATTTCTCGTCCA 400
Query 437 TGGAGAGTCT-ACAAGTTTTGAAGCTGCGATGGTGTAAATTTGAAATACCTGATAGTTC- 494
| |||| || || ||||||||| |||| ||||||||||||||||||||| |||| ||
Sbjct 401 TCGAGACACTAAC-AGTTTTGAAACTGCAATGGTGTAAATTTGAAATACCGGATA-ATCT 458
Query 495 CCCAAAAGGTCTAAAGCTCTTGAAG-ACACTCTCGCTTATGC-GTACCCAAG-TGATGGT 551
||||||||||||| ||||||| || ||||| ||||| |||| | | || || ||| |
Sbjct 459 TCCAAAAGGTCTAAGGCTCTTG-AGAACACTTTCGCTCATGCAG-A-CCGAGCTGA--CT 513
Query 552 GAAGA-CT-ATCGATGCAATCTTCAACAACTGCATCCACCTAGAGTCGCTTGAACTAATC 609
|||| | || ||||| || ||||||||||| |||||||| |||||||||| |||| ||
Sbjct 514 AAAGAGATGATAGATGCGATTTTCAACAACTGTATCCACCTCGAGTCGCTTGCACTAGTC 573
Query 610 GAATGCCGTATGGATGGGATATTAAGCATACGTGCTCA-GAATCATAAGAAGTTCAAGTC 668
|||||| ||| | |||||||| |||||| ||||| | |||||||||||||||||||
Sbjct 574 AAATGCCAAATGTACGGGATATTGAGCATATACGCTCATG-ATCATAAGAAGTTCAAGTC 632
Query 669 GCTT-GTTGTGTCTTTTATGCCGGATC-TCCGACACATCCG-GTTGGACGCACCCACT-T 724
| || |||||||||| ||||| ||| | | ||| || ||| | ||||||||| |
Sbjct 633 G-TTGGTTGTGTCTTCAATGCCAAATCTTTTG-TGCAT-CGTTTTGCATGCACCCACTCT 689
Query 725 TAGAAAACTACAAGTATGATGGATATGTCATTTGTGTTAA--CA--TTCTGATAACAAAT 780
| |||| ||||||||||||||||||| || | | || || || ||| | |||
Sbjct 690 T-GAAAGTTACAAGTATGATGGATATGCCA---G-GACAATCCAGGTTTTGAGAGTGAAT 744
Query 781 GCACTTAAAGAGGCA-AATCTCTACTACACTCGGATTCGGCGTTTATACCACCAAAAATC 839
|||||||| |||| | ||| || | || | ||| | | | | || || ||
Sbjct 745 GCACTTAAGGAGGGAGAATTTC-ATTATAATCGAAGTAAGAG----TA--GGCATTCGTC 797
Query 840 TG--AT-TTGG-TGGATAC-ACTGCGATTCTATACAAG-ACTTAC-TGTCCTCGCAACGA 892
|| || ||| ||| ||| | ||||| |||||| || | || | ||||||| ||||||
Sbjct 798 TGCCATGGTGGTTGG-TACTA-TGCGAGCCTATAC-AGCAGTT-CATGTCCTCACAACGA 853
Query 893 CAACCATCTTTCTTGAGGCTCTTACGAAGAGATACGT-C-GGAGAAGGAAGACTAGAAAA 950
||| |||||| ||||||||||| ||| | ||||| | | |||| |||| ||| |||||
Sbjct 854 CAAACATCTTGCTTGAGGCTCTCACGTATAGATA--TCCAGGAG--GGAA-ACTGGAAAA 908
Query 951 TCCGCCTTTCAAGTTTGAGAACTTAACAGAATTCAAGA-TTTCCTTTATAA-CTCCAACA 1008
|||| ||||||||||||||| |||| ||||||||||| ||||| ||| || |||||||
Sbjct 909 GCCGCTTTTCAAGTTTGAGAATTTAAGAGAATTCAAGATTTTCC-TTA-AAGCTCCAACG 966
Query 1009 TTTTGCACTCTATTTGACATCGCTGAATTCCTCAAAGAGTGCCCTAAACTCAAACAGGTT 1068
||||||||||| |||||||||||||||||||| |||||||||||||||||| |||| |||
Sbjct 967 TTTTGCACTCTTTTTGACATCGCTGAATTCCTTAAAGAGTGCCCTAAACTCGAACATGTT 1026
Query 1069 GTGATCGATATTCAG-AATTTCACATTTGAACCTCAAATGTATTTTTGGGAGATACATCA 1127
| |||||||||| | |||||||||||||| |||||| ||||||| ||||||| |||||
Sbjct 1027 ATCATCGATATTC-GTAATTTCACATTTGAGCCTCAATTGTATTTCTGGGAGACGCATCA 1085
Query 1128 TAAGGCGCAGATTCAGAAT-ACTTCGAATAACAACTACCTTTTGAAGTGTCTCACGGACG 1186
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1086 CAAGGCGCAGATTCAGAATAAC-TCGAATAACAACTACCTTTTGAAGTGTCTCACGGACG 1144
Query 1187 TGAAGATCATTGGCTATAAAGGCCACTGGCATGAGCTTGATATAGTAGAGTTCTTTGTCA 1246
| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1145 TCAAGATCATTGGCTATAAAGGCCATTGGCATGAGCTTGATATGGTAGAGTTCTTTGTCA 1204
Query 1247 AGAACGCACCATCTCTAAAGAGGTTGGAGTTACAGATGCCTAAGAACGCGAAGAACGAT- 1305
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||
Sbjct 1205 AGAACGCACCATCTCTAAAGAGGTTGGAGTTAGAGATGCCTAAGAACGCTAAGAAC-ATT 1263
Query 1306 GCTCACACCCCAGATGT-TGCAAGGATAAAGCTCATAAAAACCATCTTTTCAGGGGTTAA 1364
||||||||||||||| | ||||||||| ||| ||||||||| ||| ||| ||||| ||||
Sbjct 1264 GCTCACACCCCAGAT-TATGCAAGGATTAAGTTCATAAAAAACATATTTCCAGGGATTAA 1322
Query 1365 AGTTACCGAAGTTTAA 1380
||||||||||||||||
Sbjct 1323 AGTTACCGAAGTTTAA 1338
> Ahg924899 jgi|Araly1|924899|scaffold_200460.1
Length=1380
Score = 725 bits (392), Expect = 0.0
Identities = 1027/1325 (78%), Gaps = 78/1325 (6%)
Strand=Plus/Plus
Query 110 CGTATCTTCCCGTCCAATCTCTGTTA-ACAACTCGTG-TGTTGTCCAAAAGATTTCG-CG 166
||| ||||||| ||||||| || ||| | ||| |||| || |||||||| |||| | |
Sbjct 96 CGTTTCTTCCCATCCAATCACTTTTACAAAAC-CGTGTTG-TGTCCAAACTATTTAGAC- 152
Query 167 AGACCGAGGTACGTTCTCTTGACCTCGATTTCAGTGGAATATATTCTAG-AAGACGTCGT 225
| || ||| |||| ||||| ||||| ||||| || | ||||| |||| | ||| | | ||
Sbjct 153 ACACAGAGATACGGTCTCTCGACCTTGATTTTAGCGAAATATTTTCT-GTAAGGCATAGT 211
Query 226 AAAGTAGAAGTTGTTGGCATCATCGAAAAAGTGTTCAATC-AACATAAAGGATCAGAGAT 284
|| |||| | | || ||||||| |||| || ||||| | |||| |||||||||||||
Sbjct 212 CAACTAGAGGCTATTAACATCATCCAAAATGTCTTCAA-CAAACACGAAGGATCAGAGAT 270
Query 285 TCACCGATTCGTTCTACT-TCTCAATCATAT-TG-GGGTA-GAAGATAAAATCATCTCAT 340
||||||| ||| | | |||||| |||| | ||| | |||| || | |||||
Sbjct 271 AAACCGATTTGTT-TTGTGTCTCAAAGATATCGGCGGGGAGGAAGCGGTAA-C--CTCAT 326
Query 341 GGACCAATA-CATGTTTTGACAAAAACAT-CAAGGAGCTTGTCTTAGATTT-TTCAAAAT 397
||| ||| | | || ||| |||||| || ||| ||||| || || ||||| | |||||
Sbjct 327 GGATCAAAATC-TGCATTGCCAAAAAAATCCAA-GAGCTAGTATTGGATTTCTCCAAAAC 384
Query 398 CTAGAAAAGTTATGGCCATCC-CCATTGATTTCTCGGCTGTGGAGAGTC-TACAAGTTTT 455
| || | | |||||| | || | || |||||||||||| | || | | || ||| ||
Sbjct 385 CAAGGATA-TTATGGAGA-CCGCAATCGATTTCTCGGCTATCGAAACACTTA-AAGCCTT 441
Query 456 GAAGCTGCGATGGTGTAAATTTGAAATACCTGATAGTTC-CCCAAAAGGTCTAAAGCTCT 514
| | || ||||||||||| ||||| ||||| |||| ||| ||| ||||| || |||||||
Sbjct 442 GCATCTACGATGGTGTAAGTTTGAGATACCGGATAATTCTCCC-AAAGGCCTGAAGCTCT 500
Query 515 TGAAGACACTCTCGCTTATGCGTACCCAAGTGATGGTGAAGA-CT-ATCGATGCAATCTT 572
||||||| |||| ||||||||| || | |||| | |||| | || |||||| | ||
Sbjct 501 TGAAGACTCTCTTGCTTATGCGGACTGAGGTGA-CG-AAAGAGATGATAGATGCAGTTTT 558
Query 573 CA-ACAACTGCATCCACCTAGAGTCGCTTGAACTAA-TCGAATGCCGTATGGATGGGATA 630
|| | |||||||| |||| || |||||||| |||| || |||| ||||| | ||| ||
Sbjct 559 CAGA-AACTGCATTAACCTTGAATCGCTTGAGCTAATTC-AATGTAGTATGCACGGGCTA 616
Query 631 TTAAGCATACGT-GCTCAGAATCATAAGAAGTTCAAGTCGCTTGTTGTGTCTTTTATGCC 689
|| ||||||| | ||| | || ||||||||||||||||| || | |||| ||| ||||||
Sbjct 617 TTGAGCATAC-TCGCTAATAACCATAAGAAGTTCAAGTCACTGGCTGTGACTTATATGCC 675
Query 690 GGATCTC-CGACACATCCGGTT-GGACGCACCCACT-TTAGAAAACTACAAGTATGATGG 746
||||| | |||| || || | | ||||||||| || ||| || ||||| ||||||
Sbjct 676 AAATCTCATG-GACAT-CGTTTCGTATGCACCCACTCTT-GAATGCTTCAAGTTTGATGG 732
Query 747 ATATGTCATTTGTGTTAACATTCT-GATAACAAATGCACTTAAAGAGGCAAATCTCTACT 805
||||||||| ||||| | || | | |||| || ||||||||||| |||||||| | |
Sbjct 733 ATATGTCATGAATGTTATC-TTTTCAAGAACAGATTCACTTAAAGAGACAAATCTCCAAT 791
Query 806 A-CACTCGGATTCGGCGTTTATACCACCAAAAATCTGATTTGGTGGATAC--AC-TGCGA 861
| || ||| ||| || || || | | |||| | |||||| | | || || |
Sbjct 792 ATAAC-AGGAGTCGCCG--TA-ACTATGATTCATCTAACATGGTGGTTGCTAACATGAAA 847
Query 862 TTCTATACAAGA-CTTACTGTCCTCGCAACGACAACCATCTTTCTTGAGGCTCTT-ACGA 919
|||||||| | ||| |||||| |||||||||| |||||||||||||||| || || |
Sbjct 848 CACTATACAAAAGTTTA-TGTCCTGGCAACGACAAACATCTTTCTTGAGGCT-TTCACAA 905
Query 920 AGAGATACGTCGGAGAAGGAAGACT--AGAAAATCCG-CCTTTCAAGTTTGAGAACTTAA 976
|||||||||| |||| ||||||| | | |||| | ||||||||||||| |||||||
Sbjct 906 AGAGATACGTAGGAGGAGGAAGAATGGAAAAAAGGAGTACTTTCAAGTTTGAAAACTTAA 965
Query 977 CAGAATTCAAGATTTCCTTTATAA-CTCCAACATTTTGCACTCTATTTGACATCGCTGAA 1035
|||||||||||||| ||||| || |||||| |||||||||| |||||||| ||||||
Sbjct 966 GAGAATTCAAGATTTTCTTTA-AAGTTCCAACGGTTTGCACTCTTTTTGACATTGCTGAA 1024
Query 1036 TTCCTCAAAGAGTGCCCTAAACTCAAACAGGTTGTGATCGATATTCAGAATTTCACATTT 1095
|||||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||||
Sbjct 1025 TTCCTCAAAGAGTGCCCTCAACTCGAACATGTTGTGATCGATATTCAAAATTTCACATTT 1084
Query 1096 GAACCTCAAATGTATTTTTGGGAGATACATCATAAGGCGCAGATTCAGAATACTTCGAAT 1155
| ||||| | || | ||||||||||| |||||||||| | ||||| | | |||
Sbjct 1085 GCACCTCGATTGGAGTTTTGGGAGATTCATCATAAGGAGGAGATT----A-A----GAAG 1135
Query 1156 AACAACTACCTTTTGAAGTGTCTCACGGACGTGAAGATCATTGGCTATAAAGGCCACTGG 1215
||||||||||||||||||| |||||| || || |||||||||||||||||||||||||||
Sbjct 1136 AACAACTACCTTTTGAAGTCTCTCACTGAAGTCAAGATCATTGGCTATAAAGGCCACTGG 1195
Query 1216 CATGAGCTTGATATAGTAGAGTTCTTTGTCAAGAACGCACCATCTCTAAAGAGGTTGGAG 1275
||||||||||||||| ||||||||||||| |||||||||||||||||| || ||||||
Sbjct 1196 CATGAGCTTGATATATTAGAGTTCTTTGTGAAGAACGCACCATCTCTAGTGAAGTTGGAA 1255
Query 1276 TTACAGATGCCTAAGAACGCGAAGAACGAT-GCTCACACCCCAGATGT-TGCAAGGATAA 1333
|| |||||| || ||||| || ||| | |||||| | |||||| | |||||||||||
Sbjct 1256 TTGGTGATGCCCAAAAACGCAAA-AACCAAAGCTCACGCACCAGAT-TATGCAAGGATAA 1313
Query 1334 AGCTCATAAAAACCATCTTTTCAGGGGTTAAAGTTACCGAAGTTTAAACTCAGGTTGTGC 1393
| ||||||||| ||| ||| | ||| ||||||||| |||||||||| ||| |||| ||
Sbjct 1314 ATTTCATAAAAAGCATATTTCCCGGGATTAAAGTTAAGGAAGTTTAAATTCATGTTGAGC 1373
Query 1394 CCAGC 1398
| |||
Sbjct 1374 CAAGC 1378
> Ahg916376 jgi|Araly1|916376|Al_scaffold_0008_1127
Length=237
Score = 115 bits (62), Expect = 9e-25
Identities = 87/99 (88%), Gaps = 2/99 (2%)
Strand=Plus/Minus
Query 1165 CTTTTGAAGTGTCTCACGGACGTGAAGATCATTGGCTATAAAGGCCACT-GGCATGAGCT 1223
|||||||||| ||||| || || || |||||||||||||||||| | | ||||||||||
Sbjct 129 CTTTTGAAGTTTCTCAATGAAGTCAAAATCATTGGCTATAAAGGCTA-TAGGCATGAGCT 71
Query 1224 TGATATAGTAGAGTTCTTTGTCAAGAACGCACCATCTCT 1262
||||||||||||||||||||| ||||| ||||||||||
Sbjct 70 TGATATAGTAGAGTTCTTTGTGAAGAATACACCATCTCT 32
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56716374805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5