BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61330.1
Length=1344
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907319 jgi|Araly1|907319|Al_scaffold_0002_400 1679 0.0
Ahg924899 jgi|Araly1|924899|scaffold_200460.1 682 0.0
Ahg916376 jgi|Araly1|916376|Al_scaffold_0008_1127 115 8e-25
> Ahg907319 jgi|Araly1|907319|Al_scaffold_0002_400
Length=1338
Score = 1679 bits (909), Expect = 0.0
Identities = 1214/1358 (89%), Gaps = 34/1358 (3%)
Strand=Plus/Plus
Query 1 ATGTCAGAAGCGTCTAATAAGCAGATGAAACTCATCAAAAG-ATTGTCTGATGAGTTGGT 59
||||||||| | || |||||||||||||||||||||||||| ||| ||||||| |||||
Sbjct 1 ATGTCAGAATCCTCAAATAAGCAGATGAAACTCATCAAAAGAATT-CCTGATGATTTGGT 59
Query 60 GGAGTGCATCTTGTCATTTCTTCCAGTCCAATCTAC-TTTACAACACCGTGTTTTGTCGA 118
||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||||
Sbjct 60 GGAGTGCATCTTGTCATTTCTTCCAATCCAATCT-CTTTTACAAAACCGTGTTTTGTCGA 118
Query 119 AGAGATATAGGGACACATGGAAGCTATCTCGCGACCTCGA-TTTCAGCGGAATATTTTCT 177
|||||| ||||||||||||||| | ||||||||||||||| ||| ||| ||| ||||||
Sbjct 119 AGAGATTTAGGGACACATGGAAACAATCTCGCGACCTCGACTTT-GGCGAAATGTTTTCT 177
Query 178 GTCAGACGTAGTCAATC-AGAGGCTGTACGCATAATCGAAGACGTTTTTATTCAGCACCA 236
||||||| ||||||| | |||||||||||||||||||||| || |||||| ||||||| |
Sbjct 178 GTCAGACATAGTCAA-CTAGAGGCTGTACGCATAATCGAAAACATTTTTAATCAGCACAA 236
Query 237 AGGACCAGAGATCGACCGGTTTGTTTTGTCTCTCGACCATACCGGCGTGGAGGATAAGAT 296
|||||||||||| |||| ||||||||||||||| |||||| ||| ||||||||||||||
Sbjct 237 AGGACCAGAGATTAACCGATTTGTTTTGTCTCTCAACCATATCGGTGTGGAGGATAAGAT 296
Query 297 ACTTTCGTGGGTCGA-TACGTGTCTTCGTAAAAACATCAAAGAGCTTGTGTTGGATTTCT 355
|||||||||| || | |||||||||||||||||||||||||||||||||| | |||||||
Sbjct 297 ACTTTCGTGGATC-AGTACGTGTCTTCGTAAAAACATCAAAGAGCTTGTGCTAGATTTCT 355
Query 356 CAAGCTCCAAGAAGGTTATGGAGATCCCACTCAATTTCTCATCCAGCGAGACACTTACTG 415
| || |||||||| ||||||| ||||||| || ||||||| |||| ||||||||| || |
Sbjct 356 CGAGATCCAAGAAAGTTATGGTGATCCCAGTCGATTTCTCGTCCATCGAGACACTAACAG 415
Query 416 TTTTGAAGCTGCAATGGTGTAGATTTGAAATACCGAATAATCTTCCAAAAGGTCTAAGGC 475
||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 416 TTTTGAAACTGCAATGGTGTAAATTTGAAATACCGGATAATCTTCCAAAAGGTCTAAGGC 475
Query 476 TCTTGAAG-ACACTTTCGCTCATGCGGACTGAGGTAACGAATGAAATGATAGATTCAATT 534
||||| || |||||||||||||||| ||| ||| | || || || ||||||||| | |||
Sbjct 476 TCTTG-AGAACACTTTCGCTCATGCAGACCGAGCTGACTAAAGAGATGATAGATGCGATT 534
Query 535 TTCAACAACTGCATCCACCTTGAGTCGCTTGAACTAGTCAAATGCCAAATGTCTGGGAAT 594
||||||||||| |||||||| |||||||||| ||||||||||||||||||| | |
Sbjct 535 TTCAACAACTGTATCCACCTCGAGTCGCTTGCACTAGTCAAATGCCAAATG--T----AC 588
Query 595 GGGATACTGACCATATACGCTCATGATCATAAGAAGTTCAAGTCGTTGGTCGTGTCTTGT 654
|||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 589 GGGATATTGAGCATATACGCTCATGATCATAAGAAGTTCAAGTCGTTGGTTGTGTCTTCA 648
Query 655 ATGCCAAATCTTTTGAGCATCTTTTTGGATGCACCCACTCTTGAATGTTACAAGTATGAT 714
||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 649 ATGCCAAATCTTTTGTGCATCGTTTTGCATGCACCCACTCTTGAAAGTTACAAGTATGAT 708
Query 715 GGATATGCCAAGACCATCAACGTTTTAAAG-GTTAATGCACTTGAA-GAGGCAGAATTTC 772
|||||||||| ||| ||| | ||||| || || ||||||||| || |||| ||||||||
Sbjct 709 GGATATGCCAGGACAATCCAGGTTTT-GAGAGTGAATGCACTT-AAGGAGGGAGAATTTC 766
Query 773 ATTATAGTCGAAGTAAAAGAAGGCATTCTTCTGACACGGTGGTTGATAGTATGCTAGCCT 832
|||||| ||||||||| || |||||||| |||| || |||||||| || ||||| |||||
Sbjct 767 ATTATAATCGAAGTAAGAGTAGGCATTCGTCTGCCATGGTGGTTGGTACTATGCGAGCCT 826
Query 833 GTTCAGCAGTTCATGCCCTCACAACGACAAACATCTTGCTTGAGGCAATCACGTATAGAT 892
| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 827 ATACAGCAGTTCATGTCCTCACAACGACAAACATCTTGCTTGAGGCTCTCACGTATAGAT 886
Query 893 ACT-TAAAAGGGAAACTGGAAAAGCCGCTTTTCAAGTTTGAGAACTTGAGAGAATTCAAG 951
| | | |||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 887 A-TCCAGGAGGGAAACTGGAAAAGCCGCTTTTCAAGTTTGAGAATTTAAGAGAATTCAAG 945
Query 952 ATTTTCTTTAAGGCTCCAACATTTTGCACTCTCTTTGATATCGCTGAATTCCTTAAAGAG 1011
|||||| |||| |||||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 946 ATTTTCCTTAAAGCTCCAACGTTTTGCACTCTTTTTGACATCGCTGAATTCCTTAAAGAG 1005
Query 1012 TGCCCTAAACTCGAACAGT-TTATCATTGATATTCAG-AATTTCACATTTGAACCTCAAA 1069
||||||||||||||||| | ||||||| ||||||| | |||||||||||||| ||||||
Sbjct 1006 TGCCCTAAACTCGAACA-TGTTATCATCGATATTC-GTAATTTCACATTTGAGCCTCAAT 1063
Query 1070 TGTATTTTTGGGAGATACATCATAAGGCGCAGATTCAGAAT-ACTTCGAATAACAACTAC 1128
||||||| ||||||| ||||| |||||||||||||||||| || |||||||||||||||
Sbjct 1064 TGTATTTCTGGGAGACGCATCACAAGGCGCAGATTCAGAATAAC-TCGAATAACAACTAC 1122
Query 1129 CTTTTGAAGTGTCTCACGGACGTGAAGATCATTGGCTATAAAGGCCACTGGCATGAGCTT 1188
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1123 CTTTTGAAGTGTCTCACGGACGTCAAGATCATTGGCTATAAAGGCCATTGGCATGAGCTT 1182
Query 1189 GATATAGTAGAGTTCTTTGTCAAGAACGCACCATCTCTAAAGAGGTTGGAGTTACAGATG 1248
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1183 GATATGGTAGAGTTCTTTGTCAAGAACGCACCATCTCTAAAGAGGTTGGAGTTAGAGATG 1242
Query 1249 CCTAAGAACGCGAAGAACGAT-GCTCACACCCCAGATGT-TGCAAGGATAAAGCTCATAA 1306
||||||||||| |||||| || ||||||||||||||| | ||||||||| ||| ||||||
Sbjct 1243 CCTAAGAACGCTAAGAAC-ATTGCTCACACCCCAGAT-TATGCAAGGATTAAGTTCATAA 1300
Query 1307 AAACCATATTTTCAGGGGTTAAAGTTACCGAAGTTTAA 1344
||| ||||||| ||||| ||||||||||||||||||||
Sbjct 1301 AAAACATATTTCCAGGGATTAAAGTTACCGAAGTTTAA 1338
> Ahg924899 jgi|Araly1|924899|scaffold_200460.1
Length=1380
Score = 682 bits (369), Expect = 0.0
Identities = 1067/1391 (77%), Gaps = 100/1391 (7%)
Strand=Plus/Plus
Query 1 ATGTCAGAAGCGTCTAATAAGCAGATGAAACT-CATCAAAAGATTGTCTGATG-AGTTG- 57
||||||||| | || || |||||||| ||||| | ||| || || |||| | | |||
Sbjct 23 ATGTCAGAATCCTCAAACAAGCAGATAAAACTCCTTCACAATCTT-CCTGAAGAACTTGT 81
Query 58 GTGGAGTGCATCTTGTCATTTCTT-CCAGTCCAATCTAC-TTTACAACACCGTGTTTTGT 115
|| | | || || || |||||| ||| ||||||| || ||||||| |||||||| |||
Sbjct 82 GTTGCGGGC--CTCATCGTTTCTTCCCA-TCCAATC-ACTTTTACAAAACCGTGTTGTGT 137
Query 116 CGAAGA-GATATAGGGACACATG-GA-AGCTATCTCGCGACCTCGATTTCAGCGGAATAT 172
| || | || ||| ||||| | || | | |||| |||||| ||||| |||| |||||
Sbjct 138 CCAA-ACTATTTAGACACACA-GAGATA-CGGTCTCTCGACCTTGATTTTAGCGAAATAT 194
Query 173 TTTCTGTCAGACGTAGTCAATC-AGAGGCT-GTACGCATAATCGAAGACGTTTTTATTC- 229
||||||| || | ||||||| | ||||||| || ||| ||| || | || || | |
Sbjct 195 TTTCTGTAAGGCATAGTCAA-CTAGAGGCTATTA-ACATCATCCAAAATGTCTTCA-ACA 251
Query 230 AGCACCAAGGACCAGAGATCGACCGGTTTGTTTTGTCTCTCGACCATACCGGCGTGGAGG 289
| ||| ||||| ||||||| |||| |||||||||| |||| | ||| ||||| |||||
Sbjct 252 AACACGAAGGATCAGAGATAAACCGATTTGTTTTGTGTCTCAAAGATATCGGCGGGGAGG 311
Query 290 ATA-AGAT-ACTTTCGTGGGTCGATA-CGTGTC-TTCG-TAAAAACATCAAAGAGCTTGT 344
| | | | || || ||| || | | | || | || | ||||| ||| ||||||| ||
Sbjct 312 A-AGCGGTAAC-CTCATGGATCAAAATC-TG-CATT-GCCAAAAAAATCCAAGAGCTAGT 366
Query 345 GTTGGATTTCT-CAAGCTCCAAGAAGGTTATGGAGATCC-CACTCAATTTCTCATCCAGC 402
|||||||||| ||| ||||| | ||||||||| || || || ||||||| | | |
Sbjct 367 ATTGGATTTCTCCAA-AACCAAGGATATTATGGAGA-CCGCAATCGATTTCTCGGCTATC 424
Query 403 GAGACACTTACTGTTTTGAAGCTGCAATGGTGT-AGATTTGAAATACCGAATAA-TCTTC 460
|| ||||||| | ||| | || | ||||||| || ||||| |||||| |||| || ||
Sbjct 425 GAAACACTTAAAGCCTTGCATCTACGATGGTGTAAG-TTTGAGATACCGGATAATTC-TC 482
Query 461 CAAAAGGTCT-AAGGCTCTTGAAGACACT-TTCGCTCATGCGGACTGAGGTAACGAATGA 518
| ||||| || || |||||||||||| || || ||| |||||||||||||| ||||| ||
Sbjct 483 CCAAAGGCCTGAA-GCTCTTGAAGACTCTCTT-GCTTATGCGGACTGAGGTGACGAAAGA 540
Query 519 AATGATAGATTCAATTTTCA-ACAACTGCATCCACCTTGAGTCGCTTGAACT-AGTCAAA 576
||||||||| || |||||| | |||||||| ||||||| |||||||| || | || ||
Sbjct 541 GATGATAGATGCAGTTTTCAGA-AACTGCATTAACCTTGAATCGCTTGAGCTAATTC-AA 598
Query 577 TGCCAAATGTCTGGGAATGGGATACTGACCATA-TACGCTCATGATCATAAGAAGTTCAA 635
|| | || | | | ||| || ||| |||| | |||| || | ||||||||||||||
Sbjct 599 TG---TA-GTAT--GCACGGGCTATTGAGCATACT-CGCTAATAACCATAAGAAGTTCAA 651
Query 636 GTCGTTGGTC-GTGTCTTGTATGCCAAATCT-TTTGAGCATCTTTTTGGATGCACCCACT 693
||| ||| | ||| ||| |||||||||||| | || |||| ||| | |||||||||||
Sbjct 652 GTCACTGG-CTGTGACTTATATGCCAAATCTCATGGA-CATCGTTTCGTATGCACCCACT 709
Query 694 CTTGAATG-TTACAAGTATGATGGATATGCCAAGACCATCAACGTTTTAAAGGTTA-ATG 751
|||||||| || ||||| ||||||||||| || || | | | |||| ||| | ||
Sbjct 710 CTTGAATGCTT-CAAGTTTGATGGATATGTCATGAATGTTATC-TTTTCAAGAACAGATT 767
Query 752 CACTTGAAGAGGCAGAAT-TTC-AT-T---A-TAGTCGAAGTAAAAGAAGGCATTCTTCT 804
||||| ||||| || ||| | | || | | ||||| || || | | |||| |||
Sbjct 768 CACTTAAAGAGACA-AATCTCCAATATAACAGGAGTCGCCGT--AACTATG-ATTCATCT 823
Query 805 GACACGGTGGTTGATAGTATGCTAGC-CTGTTCAGCAGTTCATGCCCTCACAACGACAAA 863
||| |||||||| || ||| | | || | || |||| ||| ||| ||||||||||
Sbjct 824 AACATGGTGGTTGCTAACATG-AAACACTATACAAAAGTTTATGTCCTGGCAACGACAAA 882
Query 864 CATCTTGCTTGAGGCAATCACGTATAGATACTTA-AAAG-GGAA-ACTGG--AAAAGCCG 918
|||||| |||||||| |||| | |||||| || | | |||| | ||| ||||| |
Sbjct 883 CATCTTTCTTGAGGCTTTCACAAAGAGATACGTAGGAGGAGGAAGAATGGAAAAAAGGAG 942
Query 919 CT--TTTCAAGTTTGAGAACTTGAGAGAATTCAAGATTTTCTTTAAGGCTCCAACATTTT 976
| |||||||||||| ||||| ||||||||||||||||||||||| | |||||| |||
Sbjct 943 -TACTTTCAAGTTTGAAAACTTAAGAGAATTCAAGATTTTCTTTAAAGTTCCAACGGTTT 1001
Query 977 GCACTCTCTTTGATATCGCTGAATTCCTTAAAGAGTGCCCTAAACTCGAACAGT-TTATC 1035
||||||| ||||| || ||||||||||| |||||||||||| |||||||||| | || |
Sbjct 1002 GCACTCTTTTTGACATTGCTGAATTCCTCAAAGAGTGCCCTCAACTCGAACA-TGTTGTG 1060
Query 1036 ATTGATATTCAGAATTTCACATTTGAACCTCAAATGTATTTTTGGGAGATACATCATAAG 1095
|| |||||||| ||||||||||||| ||||| | || | ||||||||||| |||||||||
Sbjct 1061 ATCGATATTCAAAATTTCACATTTGCACCTCGATTGGAGTTTTGGGAGATTCATCATAAG 1120
Query 1096 GCGCAGATTCAGAATACTTCGAATAACAACTACCTTTTGAAGTGTCTCACGGACGTGAAG 1155
| | ||||| | | ||| ||||||||||||||||||| |||||| || || |||
Sbjct 1121 GAGGAGATT----A-A----GAAGAACAACTACCTTTTGAAGTCTCTCACTGAAGTCAAG 1171
Query 1156 ATCATTGGCTATAAAGGCCACTGGCATGAGCTTGATATAGTAGAGTTCTTTGTCAAGAAC 1215
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1172 ATCATTGGCTATAAAGGCCACTGGCATGAGCTTGATATATTAGAGTTCTTTGTGAAGAAC 1231
Query 1216 GCACCATCTCTAAAGAGGTTGGAGTTACAGATGCCTAAGAACGCGAAGAACGAT-GCTCA 1274
|||||||||||| || |||||| || |||||| || ||||| || ||| | |||||
Sbjct 1232 GCACCATCTCTAGTGAAGTTGGAATTGGTGATGCCCAAAAACGCAAA-AACCAAAGCTCA 1290
Query 1275 CACCCCAGATGT-TGCAAGGATAAAGCTCATAAAAACCATATTTTCAGGGGTTAAAGTTA 1333
| | |||||| | |||||||||||| ||||||||| ||||||| | ||| |||||||||
Sbjct 1291 CGCACCAGAT-TATGCAAGGATAAATTTCATAAAAAGCATATTTCCCGGGATTAAAGTTA 1349
Query 1334 CCGAAGTTTAA 1344
|||||||||
Sbjct 1350 AGGAAGTTTAA 1360
> Ahg916376 jgi|Araly1|916376|Al_scaffold_0008_1127
Length=237
Score = 115 bits (62), Expect = 8e-25
Identities = 87/99 (88%), Gaps = 2/99 (2%)
Strand=Plus/Minus
Query 1129 CTTTTGAAGTGTCTCACGGACGTGAAGATCATTGGCTATAAAGGCCACT-GGCATGAGCT 1187
|||||||||| ||||| || || || |||||||||||||||||| | | ||||||||||
Sbjct 129 CTTTTGAAGTTTCTCAATGAAGTCAAAATCATTGGCTATAAAGGCTA-TAGGCATGAGCT 71
Query 1188 TGATATAGTAGAGTTCTTTGTCAAGAACGCACCATCTCT 1226
||||||||||||||||||||| ||||| ||||||||||
Sbjct 70 TGATATAGTAGAGTTCTTTGTGAAGAATACACCATCTCT 32
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284127523
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5