BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61340.2
Length=1103
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475189 jgi|Araly1|475189|fgenesh2_kg.2__319__AT1G61340.1 678 0.0
> Ahg475189 jgi|Araly1|475189|fgenesh2_kg.2__319__AT1G61340.1
Length=924
Score = 678 bits (367), Expect = 0.0
Identities = 503/562 (90%), Gaps = 36/562 (6%)
Strand=Plus/Plus
Query 548 GTGAGGATTATCTGTGGGGTCGAGCATGAAGACTTGAAACAATTGTTTCATGTTTCAAAG 607
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 390 GTGAGGATTATCTGTGGGGTCGAGCATGAAGATTTGAAACAATTGTTTCATGTTTCAAAG 449
Query 608 ACAATAAGAGAAGCTACAATGATAGCAAAGCAGTCACATTTCGCGTATAGTACACCTCGG 667
|||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||
Sbjct 450 ACAATAAGAGAAGCTACATTGATCGCAAAGCAGTCACATTTCGCGTATAATACACCTCGG 509
Query 668 AAAACCTCGGTTTTCCACCATGGCAGATTTGGTTGGGATAAACCGTTTGATGTAGAGGAT 727
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 510 AAAGCCTCGGTTTTCCACCATGGCAGATTTGGTTGGGATAAACCGTTCGATGTAGAGGAT 569
Query 728 GATGATGAAGAGATTGAAGCTCCGGGAGCTCCGTTGCAGAAAAGGTACCGTCTTTCGAGG 787
|||| |||||||||||||||||| || ||||| ||||||||||||||||| ||||||||
Sbjct 570 GATGGTGAAGAGATTGAAGCTCCAGGTGCTCCATTGCAGAAAAGGTACCGCCTTTCGAGA 629
Query 788 ATAAACCGCAACAAGGACGA---TTCCGGAGTCTCAGTGGCTCTATTCCACTGAATCAAA 844
|||||||||||||||||||| ||| ||||||||||||||||| ||| |||||||||||
Sbjct 630 ATAAACCGCAACAAGGACGACGATTCTGGAGTCTCAGTGGCTCTGTTCAACTGAATCAAA 689
Query 845 CAACTTGGTTTCTTCAAGATTCTTAATTGAAGAGGAGGGGTTTTTAGTTATGtttttttt 904
||||||||||||||||||||||||||||||||| ||||| ||||| || || |||
Sbjct 690 CAACTTGGTTTCTTCAAGATTCTTAATTGAAGATGAGGG-TTTTT--TT-TGGTTT---- 741
Query 905 tGGGTTTTGGTTTGGATAGGTCTCTGTAAATTGTTGTTAGATACAAAAAGAGAGATAGGG 964
||||| | || ||||||||||||||||||||||||||||||| ||||||||
Sbjct 742 -GGGTT---------A-AG-TCTCTGTAAATTGTTGTTAGATACAAAAAGAAAGATAGGG 789
Query 965 TTTTGGAAAGGCTAGCTTCTTTAGAAGGTCACAAACAAACTCTATGGGAGGGTTATAGAT 1024
|||||||||||||||||| |||||||| | || | || | |||||||||| || ||
Sbjct 790 TTTTGGAAAGGCTAGCTTGTTTAGAAG---A-AA-CT--CT-T-TGGGAGGGTTCTAAAT 840
Query 1025 CTTTTTGTATGTTGTGTAGTGTGAATATAGTTTATTTGGTTTTTACAAAGTGGATTAATA 1084
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 841 CTTTTTGTATGTTGTGTAGTGTGAATATAGTTTATTTAGTTTTTACAAAGTG-ATTAATA 899
Query 1085 ATAA---GAGATGCATATTTAT 1103
|||| |||||||||||||||
Sbjct 900 ATAATAAGAGATGCATATTTAT 921
Score = 545 bits (295), Expect = 2e-154
Identities = 370/404 (92%), Gaps = 14/404 (3%)
Strand=Plus/Plus
Query 15 ACCaaaaaagaaaaaTTACTCATTTTTCTCTCAGCTTTTGTTCATTTCCCACAAACATAT 74
|||||||||||||||||||||| |||| |||||||||||||||||||||| ||||| ||
Sbjct 1 ACCAAAAAAGAAAAATTACTCA-TTTT-TCTCAGCTTTTGTTCATTTCCCGCAAAC--AT 56
Query 75 ACTTTCAAGACTCACATCAACAAATCTCGGAAAATC-TTCGGAAAAATCTTATTTATTTA 133
|| || |||| | |||| |||||||||| | ||||| || || ||||||| ||| |||||
Sbjct 57 AC-TTGAAGAAT-ACATAAACAAATCTCTG-AAATCTTTTGGGAAAATCTCATTAATTTA 113
Query 134 TTGATAAAAATGGCATTGGGGAAGAAAAGAATCGTTACCCAGAAGCCGAATTTGAGGCAA 193
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 114 TTGATAAAAATGGCATTGGGGAAGAAGAGAATCGTTACCCAGAAGTCGAATTTGAGGCAA 173
Query 194 CGTCGTGATGTGGATAATGGAGGATTAGGGTTAGGGTTAGAGTTTGTACAGTACAAGAGA 253
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 CGTCGTGATGTGGATGATGGAGGATTAGGGTTAGGGTTAGAGTTTGTACAGTACAAGAGA 233
Query 254 GGATTTGGGAGAAAGAGGATTCTCATTTCATCTGGTGATGAGAT-G-G-AGGATTCGATT 310
|||||||||||||||||||||||||||||||| ||||||||||| | | |||||||||||
Sbjct 234 GGATTTGGGAGAAAGAGGATTCTCATTTCATCAGGTGATGAGATTGAGGAGGATTCGATT 293
Query 311 TTCACTTCACCTGTTGGAAAAAAGCTCTGCGATGACAAAACTACTTCGGTTGCAGAGGGT 370
||| ||||||||||||||||||||||||||||| | | | ||||||||||||| || |||
Sbjct 294 TTCGCTTCACCTGTTGGAAAAAAGCTCTGCGAT-A-AGA-CTACTTCGGTTGCTGATGGT 350
Query 371 CAGAGTCGAGAGCTTGAAGATCTTCCCCTAGATATTCTGCTGAG 414
|| ||||||||||||||||||||||| |||||||||||| ||||
Sbjct 351 CAAAGTCGAGAGCTTGAAGATCTTCCGCTAGATATTCTGGTGAG 394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41096504526
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5