BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61350.1
Length=2013
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924896 jgi|Araly1|924896|scaffold_200457.1 2870 0.0
Ahg919936 jgi|Araly1|919936|scaffold_101217.1 1524 0.0
> Ahg924896 jgi|Araly1|924896|scaffold_200457.1
Length=1763
Score = 2870 bits (1554), Expect = 0.0
Identities = 1698/1768 (96%), Gaps = 7/1768 (0%)
Strand=Plus/Plus
Query 195 AGAAGAAGACTTTATCAACCAAAATGGGTGAAGAAGCTTGTGAGGAATCATCAAAAGCAA 254
||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||
Sbjct 1 AGAAGAAGACTTTATCAACCAAAATGGGTGAAGAAACTTGTGAGG-A--ATCAAAAGCAA 57
Query 255 GCATAGAGAAAGCAATCGAAGCAATATCTTCATTGATTTCACTCTCTCACTCAATCAAAT 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 GCATAGAGAAAGCAATCGAAGCAATATCTTCATTGATTTCACTCTCTCACTCAATCAAAT 117
Query 315 CCTTCAACATCAAATGGCAACTCATAAGAACCAAACTCCAAGAGCTTTACTCTGGTCTCG 374
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 118 CCTTCAACATCAAATGGCAACTCATAAGAACCAAACTCGAAGAGCTTTACTCTGGTCTCT 177
Query 375 ATTCTCTCCGA-AATCTCAATTCTGGATTCGACCCATCTCTCTCAAGCTTAATCTCCGCC 433
| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CTGCTCTC-GAGAATCTCAATTCTGGATTCGACCCATCTCTCTCAAGCTTAATCTCCGCC 236
Query 434 ATTCTAATCTCTCTCAAAGACACTTACGATCTCGCTACTCGCTGCGTTAACGTCTCCTTC 493
||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 237 ATTCTTATCTCTCTCAAAGACACTTACGATCTCGCTACTCGTTGCGTTAACGTTTCCTTC 296
Query 494 AGTGGTAAGCTTCTGATGCAAAGCGATTTAGATGTTATGGCGGGGAAATTCGATGGACAT 553
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 297 AGTGGTAAGCTTCTTATGCAGAGCGATTTAGATGTTATGGCGGGGAAATTCGATCGACAT 356
Query 554 ACGAGGAATCTATCTCGGATTTACTCAGCTGGGATTCTAAGTCATGGATTTGCGATCGTT 613
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 357 ACGAGGAATCTATCTCGGATTTACTCTGCTGGGATTCTAAGTCATGGATTTGCGATCGTT 416
Query 614 GTGTTGAAGCCTAATGGTAATGCTTGTAAAGATGACATGAGGTTTTACATTAGGGATTTG 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GTGTTGAAGCCTAATGGTAATGCTTGTAAAGATGACATGAGGTTTTACATTAGGGATTTG 476
Query 674 TTAACGAGAATGAAGATTGGAGATCTGGAGATGAAGAAACAAGCTTTGGTTAAGCTGAAT 733
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 477 TTAACGAGGATGAAGATTGGAGATCTGGAGATGAAGAAACAAGCTTTGGTTAAGCTTAAT 536
Query 734 GAAGCTATGGAGGAAGATGATAGATATGTTAAGATTCTGATTGAGATTAGTGATATGGTT 793
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 537 GAAGCTATGGAAGAAGATGATAGATATGTTAAGATTGTGATTGAGATTAGTGATATGGTT 596
Query 794 AATGTTCTTGTTGGGTTTCTTGATTCTGAGATTGGGATTCAAGAAGAATCTGCCAAAGCT 853
|||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct 597 AATGTTCTTGTTGGGTTTCTTGATTCTGAGATGGGGGTTCAAGAAGAATCTGCGAAAGCT 656
Query 854 GTGTTTTTTATATCTGGGTTTGGTTCTTATAGGGATGTTTTGATCAGATCAGGTGTGATT 913
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 657 GTGTTTTTTATATCTGGGTTTGGTTCTTATAGGGGTGTTTTGATCAGATCAGGTGTCATT 716
Query 914 GGTCCTTTGGTTAGGGTTCTTGAGAATGGGAATGGTGTTGGTAGAGAAGCGTCTGCAAGG 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GGTCCTTTGGTTAGGGTTCTTGAGAATGGGAATGGTGTTGGTAGAGAAGCGTCTGCAAGG 776
Query 974 TGTTTGATGAAATTAACTGAGAATTCTGAGAATGCTTGGTCTGTTTCTGCTCATGGAGGT 1033
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 777 TGTTTGATGAAATTAACGGAGAATTCGGAGAATGCTTGGTCTGTTTCTGCTCATGGAGGT 836
Query 1034 GTTTCAGCTTTGTTGAAGATTTGTTCTTGTAGTGATTTTGGTGGTGAATTGATTGGTACT 1093
|||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 837 GTTTCAGCATTGTTGAAGATATGTTCTTGTAGTGATTTTGGAGGTGAATTGATTGGTACT 896
Query 1094 TCGTGTGGTGTGTTGAGAAATCTCGTTGGTGTTGAAGAGATCAAGAGGTTTATGATTGAA 1153
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 897 TCGTGTGGTGTGTTGAGAAATCTCGTTGGTGTTGAAGAGATCAAGAGGTATATGATTGAA 956
Query 1154 GAAGATCATACTGTTGCTACTTTCATCAAGCTTATTGGATCAAAGGAGGAGATTGTTCAG 1213
|||||| ||||||| || | ||||||||||||||||||||||||||| ||||||||||||
Sbjct 957 GAAGATGATACTGTAGCGAATTTCATCAAGCTTATTGGATCAAAGGAAGAGATTGTTCAG 1016
Query 1214 GTAAATTCTATTGATTTACTGTTGAGTATGTGTTGTAAAGACGAACAAACCCGGGACATC 1273
|||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 1017 GTAAATTCCATTGATTTACTGTTGAGTATGTGTTGTAAAGATGAACAAACTCGGGAAATC 1076
Query 1274 TTGGTTAGAGAAGGAGGAATTCAGGAGCTAGTGAGTGTGTTATCAGATCCCAATTCGTTG 1333
|||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1077 TTGGTTAGGGAAGGAGGAATTCAGGAGCTGGTGAGTGTATTATCAGATCCCAATTCGTTG 1136
Query 1334 TCTTCTTCGAAATCTAAGGAGATAGCATTAAGGGCGATTGATAACTTATGTTTCGGGTCT 1393
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1137 TCCTCTTCGAAATCTAAGGAGATAGCATTAAGGGCGATTGATAACTTATGTTTTGGATCT 1196
Query 1394 GCGGGTTGTTTGAATGCATTGATGGGTTGCAAATTCTTGGATCATTTGCTGAATCTGCTA 1453
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1197 GCGGGTTGTTTGAATGCATTGATGAGTTGCAAATTCTTGGATCATTTGCTGAATCTGCTA 1256
Query 1454 AGAAATGGGGAGATTTCTGTTCAAGAATCAGCCTTGAAGGTCACATCTAGGCTATGTAGT 1513
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1257 AGAAATGGGGAGATTTCTGTTCAAGAATCAGCCTTGAAGGTCACATCTAGGCTGTGTAGT 1316
Query 1514 TTACAAGAAGAGGTTAAGAGGATAATGGGAGAGGCGGGTTTTATGCCCGAGCTAGTTAAA 1573
||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1317 TTACAAGAAGAAATTAAGAGGATAATGGGAGATGCGGGTTTTATGCCTGAGCTAGTTAAA 1376
Query 1574 TTTCTCGACGCCAAATCGATAGATGT-ACGAGAAATGGCGAGCGTGGCACTGTACTGTTT 1632
||||| |||||||||||| ||||||| | ||||||||||||| ||||| || ||||||||
Sbjct 1377 TTTCTTGACGCCAAATCGTTAGATGTCA-GAGAAATGGCGAGTGTGGCGCTCTACTGTTT 1435
Query 1633 GATCTCGGTTCCAAGGAACAGGAAGAAGTTTGCACAAGACGACTTTAACATTAGCTACAT 1692
||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||
Sbjct 1436 GATCTCGGTTCCAAGGAACAGAAAGAAGTTTGCGCAAGATGACTTTAACATAAGCTACAT 1495
Query 1693 TCTCCAGTTGCTAGACCATGAAGATGGGAGCAATGTGAGCAGCGATTCAGGTAACACAAA 1752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1496 TCTCCAGTTGCTAGACCATGAAGATGGGAGCAATGTGAGCAGCGATTCAGGTAACACTAA 1555
Query 1753 GTTTTTGATATCGATATTGATGTCTTTAACGAGCTGCAATAGCGCGAGAAGAAAGATTGC 1812
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1556 GTTTTTGATATCGATATTGATGTCTTTAACAAGCTGCAATAGCGCGAGAAGAAAGATTGC 1615
Query 1813 GAGTTCAGGGTATTTGAAAAGCATAGAGAAGCTAGCAGAAACTGAAGGTTCAGATGCTAA 1872
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 GACTTCAGGGTATTTGAAAAGCATAGAGAAGCTAGCAGAAACTGAAGGTTCAGATGCTAA 1675
Query 1873 GAAACTTGTGAAGAAGCTATCAATGAACAGATTCCGCAGCATACTCAGTGGTATTTGGCA 1932
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1676 GAAACTTGTGAAGAAGCTATCTAGGAACAGATTCCGCAGCATACTCAGTGGTATTTGGCA 1735
Query 1933 TTCCTAATTTTATTTTGTTTCCTTATAG 1960
|||||||||||||||||||| |||||||
Sbjct 1736 TTCCTAATTTTATTTTGTTTTCTTATAG 1763
> Ahg919936 jgi|Araly1|919936|scaffold_101217.1
Length=1724
Score = 1524 bits (825), Expect = 0.0
Identities = 1410/1690 (83%), Gaps = 50/1690 (3%)
Strand=Plus/Plus
Query 272 GAAGCAATATCTTCATTGATTTCACTCTCTCACTCAATCAAATCCTTCAACATCAAATGG 331
||| |||||||||| || || ||||| || ||||||||||||||||||| | | ||||||
Sbjct 43 GAATCAATATCTTCTTTAATCTCACTATCACACTCAATCAAATCCTTCACCGTGAAATGG 102
Query 332 CAACTCATAAGAACCAAACTCCAAGAGCTTTACTCTGGTCTCGA-TTCTCTCCGA-AATC 389
||| | ||| ||||||| ||| |||| || |||||||| || | ||| || ||| ||||
Sbjct 103 CAATTGATACGAACCAAGCTCGAAGAACTCTACTCTGGAATC-ACTTC-CTTCGAGAATC 160
Query 390 TCAATTCTGGA-TTCGACCCATCTCTCTCAAGCTTAATCT-CCGCCATTCTA-ATCTCTC 446
| ||||| || ||||||||||||||||| | ||| || | |||||||||| || ||||
Sbjct 161 TAAATTC-CGACTTCGACCCATCTCTCTCCACCTTGAT-TAACGCCATTCTAGAT-TCTC 217
Query 447 TCAAAGACA-CTTACGATCTCGCTACTCGCTGCGTT-AACGTCTCCTTCAGTGGTAAGCT 504
|| |||| | || ||||||| ||| | || ||| || || |||||||| || || ||||
Sbjct 218 TCCAAGA-ATCTCACGATCTTGCTTCACGATGC-TTGAATGTCTCCTTTAGCGGGAAGC- 274
Query 505 TC-TGATGCAAAGCGATTTAGATGTTATGGCGGGGAAATTCGATGGACATACGAGGAATC 563
|| ||||||| || ||||||||||||||| | |||||||||||| | ||| ||||||||
Sbjct 275 TCTTGATGCAGAGTGATTTAGATGTTATGTCTGGGAAATTCGATCGCCATGTGAGGAATC 334
Query 564 TATCTCGGATTTACTCAGCTGGGATTCTAAGTCATGGATTTGCGATCGTTGTGTT-GAAG 622
| |||||||||||||| |||| |||||| || ||||| || ||||| ||||| || ||||
Sbjct 335 TTTCTCGGATTTACTCTGCTGAGATTCTCAGACATGGGTTCGCGATTGTTGT-TTCGAAG 393
Query 623 CCTAATGGTAATGCTTGTAAAGATGACATGAGGTTTTACATTAGGGATTTGTTAACGAGA 682
|||| || ||| ||||||| |||||| |||||||||||| ||||||||||||| || ||
Sbjct 394 CCTAGTGATAAAGCTTGTAGAGATGATATGAGGTTTTACGTTAGGGATTTGTTGACAAGG 453
Query 683 ATGAAGATTGGAGATCTGGAGATGAAGAAACAAGCTTTGGTTAAGCTGAATGAAGCTATG 742
||||||||||| ||| ||||||||||||| ||||||||||||||| |||||||| |||||
Sbjct 454 ATGAAGATTGGTGATGTGGAGATGAAGAAGCAAGCTTTGGTTAAGTTGAATGAATCTATG 513
Query 743 GAGGAAGATGATAGATATGTTAAGATT-CTGATTGAGATTAGTGATATGGTTAATGTTCT 801
|| ||||||||||| ||| | |||||| || | || | || || |||||||||||| |
Sbjct 514 GAAGAAGATGATAGGTATATGAAGATTGTTG-TCGAAACCAGCGACATGGTTAATGTT-T 571
Query 802 TG-TTGGGTTTCTT-GATTCTGAGATTGGGATTCAAGAAGAATCTGCCAAAGCTGTGTTT 859
|| ||| |||| || ||||||||||||||||||||||| || || | |||||| |||||
Sbjct 572 TGATTGAGTTT-TTGGATTCTGAGATTGGGATTCAAGAGGAGGCTTCTAAAGCTTTGTTT 630
Query 860 TTTATATCTGGGTTTGGTTCTTATAGGGATGTTTTGATCAGATCAGGTGTGATTGGTCCT 919
|| ||||||||||||| ||| |||| | ||||||||| ||||| | ||| ||||||||
Sbjct 631 TTGATATCTGGGTTTGATTCGTATAAGCCTGTTTTGATTAGATCTTGCGTGGTTGGTCCT 690
Query 920 TTGGTTAGGGTTCTT-GAGAATGGGAATGGTGTTGGTAGAGAAGCGTCTGCAAGGTGTTT 978
|||||||||| | || || || || || | |||||||||||||||||| |||||||||||
Sbjct 691 TTGGTTAGGG-TGTTGGAAAACGGAAACGTTGTTGGTAGAGAAGCGTCCGCAAGGTGTTT 749
Query 979 GATGAAATTAACTGAGAATTCTGAGAATGCTTGGTCTGTTTCTGCTCATGGAGGTGTTTC 1038
||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || |
Sbjct 750 GATGAAATTAACTGAGAATTCGGAGAATGCTTGGTCTGTCTCTGCTCATGGAGGAGTGGC 809
Query 1039 AGCTTTGTTGAAGATTTGTTCTTGTAGTGATTTTGGTGGTGAATTGATTGGTA-CTTCGT 1097
|||||||| ||||||||||||||| |||| ||||||||||||||||||| || | ||||
Sbjct 810 TGCTTTGTTAAAGATTTGTTCTTGTGGTGAATTTGGTGGTGAATTGATTGCTAGC-TCGT 868
Query 1098 GTGGTGTGTTGAGAAATCTCGTTGGTGTTGAAGAGATCAAGAGGTTTATGATTGAAGAAG 1157
|||| |||||||||||||| |||||||||||||| |||||||||| ||||||||||||||
Sbjct 869 GTGGAGTGTTGAGAAATCTAGTTGGTGTTGAAGAAATCAAGAGGTATATGATTGAAGAAG 928
Query 1158 ATCATACTGTTGCTACTTTCATCAAGCTTATTGGAT-CAAAGGAGGAGATTGTTCAGGTA 1216
| ||| ||| ||||||| ||||||||||| |||| || | || |||||||||||||||
Sbjct 929 A-CAT--GGTTTCTACTTTTATCAAGCTTATAGGATCCAGA-GATGAGATTGTTCAGGTA 984
Query 1217 AATTCTATTGAT-TTACTGTTGAGTATGTGTTGTAAAGACGAACAAACCCGGGACATCTT 1275
|||||||||||| || ||| ||||||||||||| ||| ||| ||| || || || ||
Sbjct 985 AATTCTATTGATCTT-TTGTCAAGTATGTGTTGTAGAGATGAAGAAAGTCGTGAGATTTT 1043
Query 1276 GGTTAGAGAAGGAGGAATTCAGGAGCTAGTGAGTGTGTTATCAGATCCCAATTCGTTGTC 1335
|||||||| |||||||||||| ||||| ||| | || ||||||||||||||||||||||
Sbjct 1044 GGTTAGAGGAGGAGGAATTCAAGAGCTTGTG-CT-TG-TATCAGATCCCAATTCGTTGTC 1100
Query 1336 TTCTTCGAAATCTAAGGAGATAGCATTAAGGGCGATTGATAACTTATGTTTCGGGTCTGC 1395
||||||||||||||||| || ||||| ||||| ||| ||||||| ||||| ||||| |
Sbjct 1101 CTCTTCGAAATCTAAGGAAATGGCATTGAGGGCAATTCATAACTTGTGTTTTGGGTCAGT 1160
Query 1396 GGGTTGTTTGAATGCATTGATGGGTTGCAAATTCTTGGATCATTTGCTGAATCTGCTAAG 1455
| ||| |||||||||||| || || || ||||| ||||||||| || || |||| ||
Sbjct 1161 GAGTTACTTGAATGCATTGTTGAGTAGCCGTTTCTTAGATCATTTGTTGTATTTGCTGAG 1220
Query 1456 AAATGGGGAGATTTCTGTTCAAGAATCAGCCTTGAAGGTCACATCTAGGCTATGTAGTTT 1515
||||||||||| ||||||||||||||| || || ||||| ||||| ||||| ||||||||
Sbjct 1221 AAATGGGGAGACTTCTGTTCAAGAATCCGCGTTAAAGGTTACATCCAGGCTTTGTAGTTT 1280
Query 1516 A-CAAGAAGAGGTTAAGAGGATAATGGGAGAGGCGGGTTTTATGCCC-GAGCTAGTTAAA 1573
| ||| || ||||||||||||||||| || ||||||||||| ||| ||||||||||
Sbjct 1281 ACCAA-CGGATGTTAAGAGGATAATGGGCGATGCGGGTTTTAT-CCCGGAGCTAGTTAGG 1338
Query 1574 TTTCTCGACGCCAAATCGATA-GATGTACGAGAAATGGCGAGCGTGGCACTGTACTGTTT 1632
|| ||||| || ||||| || | || || |||||||| |||| ||| ||||| || ||
Sbjct 1339 TTCCTCGATGCTAAATCTTTACG-CGTCCGGGAAATGGCAAGCGAGGCGCTGTATTGCTT 1397
Query 1633 GATCTCGGTTCCAAGGAACAGGAAGAAGTTTGC-ACAAGACGACTTTAACATTAGCTACA 1691
||||||||| |||| ||||||||||||| || | || || |||| ||||| |||||||
Sbjct 1398 GATCTCGGTCCCAAAGAACAGGAAGAAG-TTCCTGCAGGAAGACTGCAACATCAGCTACA 1456
Query 1692 TTCTCCAGTTGCTAGACCATGAAGATGGGA-GCAATGTGAGCAGCGATTCAGGTAACACA 1750
|||| ||||||||||| || ||||| ||| | |||| ||| || |||| ||||||||
Sbjct 1457 TTCTTCAGTTGCTAGATCAGGAAGAAAGGATG-AATGAGAGAAGTGATTTGGGTAACACG 1515
Query 1751 AAGTTTTTGATATCGATATTGATGTCTTTAACGAGCTGCAATAGCGCGAGAAGAAAGATT 1810
|||| ||||| | |||||||||||| |||||||||||||| ||||||||| ||||||||
Sbjct 1516 AAGTCCTTGATTTTGATATTGATGTCGTTAACGAGCTGCAACAGCGCGAGACGAAAGATT 1575
Query 1811 GCGAG-TTCAGGGTATTTGAAAAGCATAGAGAAGCTAGCAGAAACTGAAGGTTCAGATGC 1869
|| | ||| || || ||||||| ||||||||| ||||| |||| |||| |||||||||
Sbjct 1576 TCG-GCTTCTGGTTACTTGAAAATCATAGAGAAACTAGCTGAAAGAGAAGATTCAGATGC 1634
Query 1870 TAAGAAACTTGTGAAGAAGCTATCAATGAACAGATTCCGCAGCATACTCAGTGGTATTTG 1929
|||||||||||||||||||||||| | ||||||||||| || |||||| ||||||||||
Sbjct 1635 TAAGAAACTTGTGAAGAAGCTATCTAGGAACAGATTCCACACCATACTTGGTGGTATTTG 1694
Query 1930 GCATTCCTAA 1939
||||||||||
Sbjct 1695 GCATTCCTAA 1704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75685316815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5