BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61540.1
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315222 jgi|Araly1|315222|fgenesh1_pm.C_scaffold_2000255 889 0.0
Ahg490739 jgi|Araly1|490739|fgenesh2_kg.7__172__AT4G39590.1 392 3e-108
Ahg938375 jgi|Araly1|938375|scaffold_502566.1 54.7 2e-06
> Ahg315222 jgi|Araly1|315222|fgenesh1_pm.C_scaffold_2000255
Length=1125
Score = 889 bits (481), Expect = 0.0
Identities = 647/725 (89%), Gaps = 19/725 (3%)
Strand=Plus/Plus
Query 43 CCGTATCCTTCTCCGGTGACAGAAGAACCAATC-TCTATCATGTCACTTCCTTATGACTT 101
|||| ||| |||||||||||||||||||| ||| || |||||||||||||||||||||||
Sbjct 10 CCGTCTCCGTCTCCGGTGACAGAAGAACC-ATCATCGATCATGTCACTTCCTTATGACTT 68
Query 102 GTTATTGAACTGCTTCT-CACTCGTCTCAAGGTTGTATTATCCAACTCTCTCCCTCGTTT 160
||| || |||||||| | ||| |||||| || ||||| ||||||||||||||||||||||
Sbjct 69 GTTGTTCAACTGCTT-TGCACGCGTCTCTAGATTGTACTATCCAACTCTCTCCCTCGTTT 127
Query 161 CCAAAACTTTTCGATCTA-TCATTACTTCA-CGCGAACTTTACGAGATCCGATCACGCTT 218
|||||||||| ||||| | | ||| |||| || || |||||||||| |||||||||||
Sbjct 128 CCAAAACTTTCCGATCCATTGTTTA-TTCATCG-GAGCTTTACGAGACCCGATCACGCTC 185
Query 219 AAACCGTACGGATAAGTGTCTCTATCTTTGC-T----T-CCCTTACGACA-TGAACACGC 271
|| ||||||||| ||||||||||||||||| | | ||||| ||||| | |||||
Sbjct 186 AAGCCGTACGGAGGAGTGTCTCTATCTTTGCTTACACTACCCTTCCGACACT-AACACTT 244
Query 272 ATTGGTTCACTCTCTGCCGGGAACCTAATCGAAACGTTGCCGAGAATTCAAGTGGCTATC 331
||||| ||||||| | |||| |||||||| ||||||| || || || |||||||||||||
Sbjct 245 ATTGGGTCACTCTGTACCGGAAACCTAATGGAAACGTAGCTGACAAGTCAAGTGGCTATC 304
Query 332 TTCTGGTCCAAGTTCCATCTCCCAATGGTTTACTTCCTGTGCATTCGTCGAGTGTCATAG 391
|||||||||||||||||||||||||| |||| ||||||| || ||||||||||||||||
Sbjct 305 TTCTGGTCCAAGTTCCATCTCCCAATTGTTTGCTTCCTGCACAGTCGTCGAGTGTCATAG 364
Query 392 CCGTTGGTTCTAATATCTACAAAATCGGCGGCACTAAGTCTTATAGACACAAACTCTGGA 451
|||||||||||||||||||||||||||||||| |||| ||||||||| ||||| ||||||
Sbjct 365 CCGTTGGTTCTAATATCTACAAAATCGGCGGCGCTAAATCTTATAGATACAAATTCTGGA 424
Query 452 AAAGGACGCGCTATTCTTCTTCTGTCTCTGTCCTGGATTGTCGGAGTCACAGGTGGCGTC 511
| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 425 A--G-ACGCGCTATTCTTCTTCTGTCTCAGTCCTGGATTGTCGGAGTCACAGGTGGCGTC 481
Query 512 AGGCTCCAGGAATGCGAGTGGCCCGGGGCTGTTCCTCCACAGTATGTGAAGTTGATGGGA 571
| |||||||| ||||||||||||||| ||| ||||||||||||||| |||||||||||||
Sbjct 482 ATGCTCCAGGTATGCGAGTGGCCCGGAGCTCTTCCTCCACAGTATGCGAAGTTGATGGGA 541
Query 572 AGATATATATAGCAGGAGGCTGTAAAGAAGACATCGGTTCCTTGTACTGGATTGAAGTGT 631
|||||||| ||||||||||||||||||| |||||| |||||||||||||||| |||||||
Sbjct 542 AGATATATGTAGCAGGAGGCTGTAAAGACGACATCTGTTCCTTGTACTGGATGGAAGTGT 601
Query 632 TTGATCCAAAAACTCAAACTTGGGGCACTCTGAAGAACCCATGCATTGAGTATCAACATG 691
|||||||||| |||||||||||||||||| ||||||||||| |||| ||||||||| |||
Sbjct 602 TTGATCCAAAGACTCAAACTTGGGGCACTTTGAAGAACCCAAGCATCGAGTATCAAAATG 661
Query 692 ATATTGGATATAGATGTGAAGTCAAAAGCTTAGGTCTTGATGGAAAAATATACATGTTTG 751
|||||||||||| | ||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 662 ATATTGGATATACAAGTGTAGTCAAAAGCTTAGGTCTTGATGGAAAATTATACATGTTTG 721
Query 752 GAAGT 756
|||||
Sbjct 722 GAAGT 726
Score = 130 bits (70), Expect = 3e-29
Identities = 200/258 (78%), Gaps = 27/258 (10%)
Strand=Plus/Plus
Query 910 GTGTTCAAATGGTATGACTT-TAAGGTAAGTTTGTGGAAGGAATTGAATGGTGTTGAAGG 968
||||| ||||||||||| || ||||| ||| || |||||| || ||||||||||||||||
Sbjct 823 GTGTTTAAATGGTATGA-TTCTAAGGCAAGGTTATGGAAGAAACTGAATGGTGTTGAAGG 881
Query 969 ATTGCCTGATTTAAGTGACCGTGGGTATGTTAAAATGGTGGATCTTGGTGGAAAGAT-AG 1027
|||||||||||| || | || | | | || |||||||| ||||||| ||||| |
Sbjct 882 ATTGCCTGATTTTTGTCAT--TG--T-T-T-AA--TGGTGGATGTTGGTGGGAAGATGAT 932
Query 1028 CGGTTTTGTGGCAAGAGTGTCTG-ACTAATA-AGAAAATT--A--A-AA-G-GATTTGGT 1078
|||||||||| | |||| | || | || | | | ||| | | || | ||||||||
Sbjct 933 -GGTTTTGTGGGATGAGTTTGTGTATTATTCCACTAGATTTCAGGAGAATGTGATTTGGT 991
Query 1079 GTGCTGAGATTA-GCCTTGAAAGACGCGAT-A-G-AGATGAGATTTGGGGGAAGGTTGAG 1134
|||| |||||| || |||||||| | | | | | |||||||||||||||||| ||||||
Sbjct 992 GTGCGGAGATTTCGC-TTGAAAGAAGAGGTGATGGAGATGAGATTTGGGGGAAAGTTGAG 1050
Query 1135 TGGTTTGATATTGTGCTT 1152
||||||||| |||||||
Sbjct 1051 TGGTTTGATGCTGTGCTT 1068
> Ahg490739 jgi|Araly1|490739|fgenesh2_kg.7__172__AT4G39590.1
Length=1354
Score = 392 bits (212), Expect = 3e-108
Identities = 851/1142 (75%), Gaps = 114/1142 (10%)
Strand=Plus/Plus
Query 59 TGACAGA-AGAACCAATCTCTATCATG-TCACTTCCTTATGACTTGTTATTGAACTGCTT 116
|||| || |||||||| ||| ||| | |||||| || ||||||||||||||||||||||
Sbjct 71 TGAC-GACAGAACCAAACTCGATC-GGTTCACTTTCTAATGACTTGTTATTGAACTGCTT 128
Query 117 CT-CAC-TCGTCTCAAGGTTGTATTATCCAACTCTCTCCCTCGTTTCCAAAACTTTTCGA 174
| | | | ||||| || |||||||||| ||||||| | ||| ||||||| || |||
Sbjct 129 -TGCCCGT-GTCTCTAGAATGTATTATCCCGCTCTCTCTCGCGTCTCCAAAAGATTCCGA 186
Query 175 TCTATCATTACTTCACGC-GA-ACTTTACGAGATC-CGATCACGCTTAAACCGTACGGAT 231
|| ||| ||||||||| | || | ||||| | | | ||||| | |||||||||||| ||
Sbjct 187 TCCATCGTTACTTCAC-CAGAGA-TTTACCACA-CTCGATCTCTCTTAAACCGTACCGAG 243
Query 232 AAGTGTCTCTATC--T--TT--GCTTCCCTTACGAC-ATGAACACGCATTGGTTCACTCT 284
||||||||||||| | || ||||||||| |||| || ||||| ||||||||||||||
Sbjct 244 AAGTGTCTCTATCTATGCTTACGCTTCCCTTTCGACAAT-AACACACATTGGTTCACTCT 302
Query 285 CTGCCGGGAA-CCTAATCGAAACGT-TGCCGAGAATTCAAGTGGCTATCTTCTGGTCCAA 342
|| || ||| |||||||||| ||| | | | || ||||||||| | || ||||||||
Sbjct 303 CTACC-AGAACCCTAATCGAAGCGTAAG-CAACAAGTCAAGTGGCAAGGTTTTGGTCCAA 360
Query 343 GTTCCATCTCCCAATGGTTTACTTCCTGTGCATTCGTCGAGTGTCATAGCCGTTGGTTCT 402
||||||||||| | || | | || | ||| ||||||| | || |||| |||||||||
Sbjct 361 ATTCCATCTCCCGA--GTAT-CCTCTTACGCAATCGTCGAATCTCGTAGCGGTTGGTTCT 417
Query 403 AATATCTACAAAATCGGCGGCA-C-TAAGT-CT--TAT-AGACACAAAC-TCTGGAAAAG 455
|||||||||||||| || || | | | || | | | | | | | |||| | ||
Sbjct 418 AATATCTACAAAATTGGTGGAACCGTTGGTGATGATTTCTG-CCCTCTCGGCTGGGATAG 476
Query 456 GACGCGCTATTCTTCTTCTGTCTCTGTCCTGGATTGTCGGAGTCACAGGTGGCGTC-A-G 513
|| | | ||||||| ||||||||||||||||||||| ||||| |||||| | | |
Sbjct 477 GAAAC-C--TTCTTCTAAAGTCTCTGTCCTGGATTGTCGGTCTCACACGTGGCG-CGATG 532
Query 514 GCTCCAGGAATGCGAGTGGCCCGGGGCTGTTCCTCCACAGTATGTGAAGTTGATGGGAAG 573
| |||| |||||||| ||| | || ||||||||| | | | |||||||||||||
Sbjct 533 G-TCCAAGAATGCGATTGG-AC-AGG-AAATCCTCCACAACAAGCGTAGTTGATGGGAAG 588
Query 574 ATATATATAGCAGGAGGCTGTAAAGAAGACATCGG-T--T-CCTTGTACTGGATTGAAGT 629
|||||| || |||||||| | | |||||| ||| | | ||| ||||||| |||||
Sbjct 589 ATATATGTAACAGGAGGCACT--A-AAGACA-CGGATAATCCCTCAAACTGGATCGAAGT 644
Query 630 GTTTGATCCAAAAACTCAAACTTGGGGCACT-C-TGAAGAACCCAT-GCAT--TGA-G-T 682
||||||||||||||| |||| |||||| | | | | | |||||| | |||| ||| | |
Sbjct 645 GTTTGATCCAAAAACACAAAGTTGGGG-A-TCCGTTACGAACCC-TCGCATCGTGAGGCT 701
Query 683 ATCAACATGA-TATTGGATATAGATGTGAAGTCAAAAGCTTAGGTCTTGATGGAAAAATA 741
| | || | | |||||| ||| |||||||||| |||| | ||| |||||| ||
Sbjct 702 -TTGGGAGGAGGA-AAGCTATAGACGTGTAGTCAAAAGCATAGGACATGAAGGAAAACTA 759
Query 742 TACATGTTT-GGAAGTGAGTTTGTGGTTTACAATTTTGAGGAAGATAGATGGAAATGTAT 800
||| ||||| || | ||||||||| ||||||||| ||||||| | | | ||| |
Sbjct 760 TACCTGTTTGGGGA-TGAGTTTGTAGTTTACAATCCAGAGGAAG---G-T--ATATGGA- 811
Query 801 AGGCCGAGATAAGTATAATTTGTATCATGCAGTAGACCCTATGTCTCGCA-TAAACTCTA 859
| || || | || | | | || | || || | | || | ||| |||| || |
Sbjct 812 A--CCCAG-T-AGGA-GA---GGAT-AGGC-TTA-TCGGT-TG--T-GCATTAAAGTCGA 856
Query 860 GTTCTTGCGTGGTAGACAATGTCTTGTTCAT-TTTGGATAAGGGAACTCGAGTGTTCAAA 918
||| ||||||| ||||||| |||||||| | | |||| || |||||||||||
Sbjct 857 GTTATTGCGTGATAGACAACATCTTGTTC-TACTGGGAT----CAA--GGAGTGTTCAAA 909
Query 919 TGGTATGACTTTAAGGTAAGTTTGTGGAAGGAATTGAATGGTGTTGAAGGATTGCCTGAT 978
||||| ||| |||||| || |||||||||||||| || ||||||| || ||||||
Sbjct 910 TGGTACGACAGTAAGGTTCCTTCATGGAAGGAATTGAAAGGCCTTGAAGGGTTACCTGAT 969
Query 979 TTAAGTGACCGTGGGTA-TGTTAAAATGGTGGATCTTGGTGGAAAGATAGCGGTTTTGTG 1037
|| || |||||| ||| || || | |||||||| ||||||||||||| ||||| |||||
Sbjct 970 TTTAGCCACCGTGAGTATTG-TAGATTGGTGGATTTTGGTGGAAAGATGGCGGTGTTGTG 1028
Query 1038 GCA-AGA-GTGTCTG-ACTAAT-AAGAAAATTAAAAG-GATTTGGTGTGCTGAGATTAGC 1092
| | | | | | || ||| | | | | | | | | ||||||||||||||||||| |
Sbjct 1029 GGATATATGGGAGTGTACTTCTGAGGCATA-T-ATGGCGATTTGGTGTGCTGAGATT-TC 1085
Query 1093 -CTTG-AAAGACGCGATAGAGATGAGATTTGGGGGAAGGTTGAGTGGTTTGATATTGTGC 1150
|||| |||| |||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1086 ACTTGAAAAG-CGCGATGGAGATGAGATTTGGGGGAAGGTTGAGTGGTTTGATACTGTGC 1144
Query 1151 TT 1152
||
Sbjct 1145 TT 1146
> Ahg938375 jgi|Araly1|938375|scaffold_502566.1
Length=678
Score = 54.7 bits (29), Expect = 2e-06
Identities = 104/139 (75%), Gaps = 10/139 (7%)
Strand=Plus/Plus
Query 908 GAGTGTTCAAATGGTATGACTTTAAGGTAAGTTTGTGGAAGGAA-TTGAATGGTGTT-GA 965
||| ||| |||||||||||| | ||||||| ||||| || || ||| | ||| || |
Sbjct 474 GAGAGTTAAAATGGTATGACACTGAGGTAAGAATGTGG-AGAAATTTGGAGGGT-TTGGC 531
Query 966 AGGATTGCCTGATTTAAGTGACCGTGGGT-ATGTTAAAATGG-TGGATCT-TGGTGGAAA 1022
|||| | ||| | || | | || | | |||||| | ||| | || | |||||||||
Sbjct 532 AGGACTACCTAAGTTCCCTCAGGGT-GCTAATGTTAGATTGGCT-AAT-TATGGTGGAAA 588
Query 1023 GATAGCGGTTTTGTGGCAA 1041
|||||||||||||||||||
Sbjct 589 GATAGCGGTTTTGTGGCAA 607
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45137533728
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5