BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G61560.1 Length=1942 Score E Sequences producing significant alignments: (Bits) Value Ahg315221 jgi|Araly1|315221|fgenesh1_pm.C_scaffold_2000254 2645 0.0 Ahg951023 jgi|Araly1|951023|scaffold_802910.1 350 3e-95 Ahg931711 jgi|Araly1|931711|scaffold_304168.1 350 3e-95 > Ahg315221 jgi|Araly1|315221|fgenesh1_pm.C_scaffold_2000254 Length=1761 Score = 2645 bits (1432), Expect = 0.0 Identities = 1659/1767 (94%), Gaps = 21/1767 (1%) Strand=Plus/Plus Query 13 ATGGCGGATCAAGTTAAAGAAAAGACATTGGAGGAAACTTCTACATGGGCCGTCGCGGTG 72 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 1 ATGGCGGATCAAGTTAAAGAAAAGACATTAGAGGAAACTTCTACATGGGCCGTTGCGGTG 60 Query 73 GTTTGCTTCGTCTTGCTTCTGATTTCGATCGTTATTGAAAAACTTATTCATAAAATTGGA 132 |||||||||||||||||| |||||||||| |||||||| ||||||||||||||| ||||| Sbjct 61 GTTTGCTTCGTCTTGCTTTTGATTTCGATTGTTATTGAGAAACTTATTCATAAACTTGGA 120 Query 133 TCCTGGTTTAAAAAG-AAGAACAAAAAAGCTCTATATGAAGCACTTGAAAAAGTGAAAGC 191 ||||||||| || || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCCTGGTTT-AAGAGTAAGAACAAAAAAGCTCTATATGAAGCACTTGAAAAAGTGAAAGC 179 Query 192 AGAGCTTATGCTGATGGGATTCATATCACTACTTCTAACAATTGGACAAGGATATATCTC 251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 AGAGCTTATGCTGATGGGATTCATATCACTACTTCTAACAATTGGACAAGGATATATCTC 239 Query 252 AAATATTTGCATCCCTAAGAACATCGCAGCATCGATGCACCCTTGTAGTGCATCCgaaga 311 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 AAATATTTGCATACCTAAGAACATCGCAGCATCGATGCACCCTTGTAGTGCATCCGAAGA 299 Query 312 agcaagaaagtatggtaagaaagatg-tcccaaaggaagatg-a-a-ga---agaaaaCT 364 || |||||||| ||||||||||||| | | |||| |||| | | | || |||||| | Sbjct 300 GGCGAGAAAGTACGGTAAGAAAGATGCTGC-AAAGAAAGACGGAGAAGATGGAGAAAA-T 357 Query 365 T-GCGTCGAAAGCTTCTACAGTTAGTTGATTCTCTTATTCCTCGAAGGAGTTTGGCTACT 423 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 TCGCGTCGAAAGCTTCTACAGTTAGTTGATTCTCTTATTCCTCGAAGGAGTTTGGCTACC 417 Query 424 AAAGGTTATGATAAGTGTGCAGAGAAGGGAAAAGTCGCTTTTGTATCGGCTTATGGCATG 483 ||||||||||| |||||||||||||||||||| || |||||||||||||||||||| ||| Sbjct 418 AAAGGTTATGACAAGTGTGCAGAGAAGGGAAACGTAGCTTTTGTATCGGCTTATGGTATG 477 Query 484 CATCAGCTGCATATATTCATCTTTGTTCTTGCGGTTTGTCATGTGATCTACTGCATTGTT 543 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 478 CATCAGCTGCATATATTCATATTTGTTCTTGCGGTTTGTCATGTGATCTACTGCATTGTC 537 Query 544 ACTTATGCTTTGGGAAAGACCAAAATGAGAAGGTGGAAGA-AGTGGGAAGAGGAGACTAA 602 ||||||||||| || |||||||| |||||||||||||||| | |||||||||||||| || Sbjct 538 ACTTATGCTTTAGGCAAGACCAAGATGAGAAGGTGGAAGAGA-TGGGAAGAGGAGACGAA 596 Query 603 GACTATCGAATATCAGTATTCACACGATCCCGAGAGGTTTAGGTTTGCGCGGGATACATC 662 ||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct 597 GACAATCGAATATCAGTATTCACACGATCCCGAGAGGTTTAGATTTGCGAGGGATACATC 656 Query 663 TTTCGGGCGTAGACATCTGAGTTTCTGGAGCAAATCAACTATTACGCTGTGGATTGTATG 722 |||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||| Sbjct 657 TTTCGGGCGTAGACATCTAAATTTCTGGAGCAAATCGACTATTACGCTGTGGATTGTATG 716 Query 723 TTTCTTCAGGCAGTTCTTTAGATCTGTAACCAAAGTTGATTACTTAACACTGAGACATGG 782 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 TTTCTTCAGACAGTTCTTTAGATCTGTAACCAAAGTTGATTACTTAACACTGAGACATGG 776 Query 783 TTTCATCATGGCCCATTTGGCTCCTGGGAGCGACGCAAGGTTCGATTTCCGAAAGTATAT 842 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 777 TTTCATCATGGCCCATTTGGCTCCCGGGAGCGACGCAAGATTCGATTTCCGAAAGTATAT 836 Query 843 TCAGAGATCACTAGAGGAAGACTTCAAAACCATTGTCGAGATCAACCCTGTGATCTGGTT 902 |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 837 TCAGAGATCATTAGAGGAAGACTTCAAAACCATTGTCGAGATCAATCCTGTGATCTGGTT 896 Query 903 CATAGCTGTGCTATTCCTCCTGACAAACACAAACGGATTGAATTCTTACCTCTGGCTACC 962 ||| || ||| ||||||| |||||||||||| |||||||| |||||||||||||| |||| Sbjct 897 CATCGCCGTGTTATTCCTACTGACAAACACACACGGATTGCATTCTTACCTCTGGTTACC 956 Query 963 GTTCATTCCCTTCATCGTGATTCTTATTGTTGGAACAAAACTTCAAGTGATAATAACAAA 1022 ||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 957 GTTCATTCCATTCGTCGTGATTCTTATTGTTGGGACAAAACTTCAAGTGATAATAACAAA 1016 Query 1023 ACTAGGACTTA-GAATCCAAGAGAAAGGCGACGTAGTGAAAGGCACACCGCTAGTTCAAC 1081 ||| ||||| | |||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 1017 ACTGGGACT-ACGAATCCAAGAGAAAGGTGACGTAGTGAAAGGCACACCGCTAGTTCAGC 1075 Query 1082 CCGGTGATCATTTCTTCTGGTTCGGTCGTCCACGTTTCATTCTCTTCCTCATTCACTTAG 1141 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1076 CCGGTGATCATTTCTTCTGGTTCGGTCGCCCACGTTTCATTCTCTTCCTCATTCACTTAG 1135 Query 1142 TCCTCTTCACGAACGCGTTTCAACTAGCTTTCTTTGTCTGGAGTACGTATGAATTCGGTC 1201 ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 1136 TCCTCTTCACGAACGCGTTTCAACTCGCTTTCTTTGCCTGGAGTACGTATGAATTCGGTC 1195 Query 1202 TAAAGAACTGTTTCCATGAAAGCAGAGTTGACGTGATCATCAGAATCTCAATCGGACTTT 1261 |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 1196 TAAAGAACTGTTTCCATGAAAGCAGAGTAGATGTGATCATCAGAATCTCAATCGGACTTA 1255 Query 1262 TAGTTCAGATTCTTTGCAGCTACGTTACTCTTCCTCTATATGCTCTTGTTACTCAAATGG 1321 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1256 TAGTCCAGATTCTTTGCAGCTACGTTACTCTTCCTCTATATGCTCTCGTTACTCAAATGG 1315 Query 1322 GTTCAAAGATGAAACCAACAGTGTTCAACGAGAGAGTAGCAACAGCGTTAAAGAGTTGGC 1381 ||||||||||||| |||||||| |||||||||||||||||||| || ||||||||||||| Sbjct 1316 GTTCAAAGATGAAGCCAACAGTATTCAACGAGAGAGTAGCAACGGCATTAAAGAGTTGGC 1375 Query 1382 ATCACACAGCTAAGAAAAATATCAAACATGGAAGAACTTCAGAATCAACAACACCTTTCT 1441 |||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 1376 ATCACACAGCAAAGAAACAGATCAAACATGGAAGAACTTCAGAATCAACAACACCTTTCT 1435 Query 1442 CTAGTAGACCAACAACACCAACTCATGGTTCTTCTCCGATTCATCTCCTTCGTAATGCTC 1501 |||| |||||||||||||||| ||||||||||||||||||||||| || || ||||| | Sbjct 1436 CTAGCCGACCAACAACACCAACACATGGTTCTTCTCCGATTCATCTTCTCCGAAATGCCC 1495 Query 1502 CTCACAAACGAAGCAGAAGCGTTGACGAAAGCTTTGCGAATTCGTTTTCTCCGAGAAACT 1561 | |||||||||||||||||||| ||||||||||| ||||||||| | ||||| ||||||| Sbjct 1496 CCCACAAACGAAGCAGAAGCGTCGACGAAAGCTTCGCGAATTCGATGTCTCCTAGAAACT 1555 Query 1562 CTGATTTCGATTCGTGGGATCCTGAGTCTCAACATGAAACT-GCTGAGACTTCGAATTCG 1620 ||||||||||||| ||||||||||| |||||||| ||| | ||||||||||||||||| Sbjct 1556 CTGATTTCGATTCATGGGATCCTGAATCTCAACACGAAG-TAGCTGAGACTTCGAATTCA 1614 Query 1621 AATCATCGTTCTAGGTTTGGAGAAGAAGAATCGGAGAAAAAGTTTGTTTCTTCATCA--- 1677 ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| Sbjct 1615 AATCATCGTTCTAGGGTTGGAGAAGAAGAGTCGGAGAAAAAGTTTGTTTCTTCATCATCT 1674 Query 1678 GTGGAACTTCCTCCTGGACCTGGACAAATACGAACACAGCATGAGATTAGTACTATAAGC 1737 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1675 GTGGAACTTCCTCCAGGACCTGGACAAATACGAACACAGCATGAGATTAGTACTATTAGC 1734 Query 1738 TTAAGGGATTTTTCGTTTAAGCGATGA 1764 |||||||||||||||||||| |||||| Sbjct 1735 TTAAGGGATTTTTCGTTTAAACGATGA 1761 > Ahg951023 jgi|Araly1|951023|scaffold_802910.1 Length=396 Score = 350 bits (189), Expect = 3e-95 Identities = 283/325 (87%), Gaps = 19/325 (6%) Strand=Plus/Plus Query 1318 ATGGGTTCAAAGATGAAACCAACAGTGTTCAACGAGAGAGTAGCAACAGCGTTAAAGAGT 1377 |||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| Sbjct 23 ATGGGTTCAAAGATGAAACCAACATTGTTCAACGAGAGAGTAGCAACAACATTAAAGAGT 82 Query 1378 TGGCATCACACAGCTAA-GAAA-A-AT-A-TCA--AA-CATGGAAGAACTTCAGAATCAA 1429 |||||||||||| | || |||| | || | | | || |||||||||||||||||||||| Sbjct 83 TGGCATCACACATC-AATGAAACAGATCAATTATGAAACATGGAAGAACTTCAGAATCAA 141 Query 1430 CAACACCTTTCTCTAGTAGACCAACAACACCAACTCATGGTTCTTCTCCGATTCATCTCC 1489 | | | ||||||||| |||||||||||||||| ||||||||||||||||||||||||| Sbjct 142 -A-C-C-TTTCTCTAGCCGACCAACAACACCAACACATGGTTCTTCTCCGATTCATCTCC 197 Query 1490 TTCGTAATGCTCC-TCACAAACGAAGCAGAAGCGTTGACGAAAGCTTTGCGAATTCGTTT 1548 ||| |||| ||| ||||||||||||||||||| | || || ||||| | || |||| | Sbjct 198 TTCACAATG-TCCCTCACAAACGAAGCAGAAGCATCGATGATAGCTTCGTGA-TTCGATG 255 Query 1549 TCTCCGAGAA-A--CTCTGATTTCGATTCGTGGGATCCTGAGTCTCAACATGAAACTGCT 1605 |||||||||| | ||||||||||||||| ||||||| ||| |||||||| ||||||||| Sbjct 256 TCTCCGAGAAGAAACTCTGATTTCGATTCATGGGATCATGAATCTCAACACGAAACTGCT 315 Query 1606 GAGACTTCGAATTCGAATCATCGTT 1630 |||||||||||||| |||||||||| Sbjct 316 GAGACTTCGAATTCAAATCATCGTT 340 > Ahg931711 jgi|Araly1|931711|scaffold_304168.1 Length=396 Score = 350 bits (189), Expect = 3e-95 Identities = 283/325 (87%), Gaps = 19/325 (6%) Strand=Plus/Plus Query 1318 ATGGGTTCAAAGATGAAACCAACAGTGTTCAACGAGAGAGTAGCAACAGCGTTAAAGAGT 1377 |||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| Sbjct 23 ATGGGTTCAAAGATGAAACCAACATTGTTCAACGAGAGAGTAGCAACAACATTAAAGAGT 82 Query 1378 TGGCATCACACAGCTAA-GAAA-A-AT-A-TCA-AA--CATGGAAGAACTTCAGAATCAA 1429 |||||||||||| | || |||| | || | | | || |||||||||||||||||||||| Sbjct 83 TGGCATCACACATC-AATGAAACAGATCAATTATAAAACATGGAAGAACTTCAGAATCAA 141 Query 1430 CAACACCTTTCTCTAGTAGACCAACAACACCAACTCATGGTTCTTCTCCGATTCATCTCC 1489 | | | ||||||||| |||||||||||||||| ||||||||||||||||||||||||| Sbjct 142 -A-C-C-TTTCTCTAGCCGACCAACAACACCAACACATGGTTCTTCTCCGATTCATCTCC 197 Query 1490 TTCGTAATGCTCC-TCACAAACGAAGCAGAAGCGTTGACGAAAGCTTTGCGAATTCGTTT 1548 ||| |||| ||| ||||||||||||||||||| | || || ||||| | || |||| | Sbjct 198 TTCACAATG-TCCCTCACAAACGAAGCAGAAGCATCGATGATAGCTTCGTGA-TTCGATG 255 Query 1549 TCTCCGAGAA-A--CTCTGATTTCGATTCGTGGGATCCTGAGTCTCAACATGAAACTGCT 1605 |||||||||| | ||||||||||||||| ||||||| ||| |||||||| ||||||||| Sbjct 256 TCTCCGAGAAGAAACTCTGATTTCGATTCATGGGATCATGAATCTCAACACGAAACTGCT 315 Query 1606 GAGACTTCGAATTCGAATCATCGTT 1630 |||||||||||||| |||||||||| Sbjct 316 GAGACTTCGAATTCAAATCATCGTT 340 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72980909420 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5