BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61560.1
Length=1942
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315221 jgi|Araly1|315221|fgenesh1_pm.C_scaffold_2000254 2645 0.0
Ahg951023 jgi|Araly1|951023|scaffold_802910.1 350 3e-95
Ahg931711 jgi|Araly1|931711|scaffold_304168.1 350 3e-95
> Ahg315221 jgi|Araly1|315221|fgenesh1_pm.C_scaffold_2000254
Length=1761
Score = 2645 bits (1432), Expect = 0.0
Identities = 1659/1767 (94%), Gaps = 21/1767 (1%)
Strand=Plus/Plus
Query 13 ATGGCGGATCAAGTTAAAGAAAAGACATTGGAGGAAACTTCTACATGGGCCGTCGCGGTG 72
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1 ATGGCGGATCAAGTTAAAGAAAAGACATTAGAGGAAACTTCTACATGGGCCGTTGCGGTG 60
Query 73 GTTTGCTTCGTCTTGCTTCTGATTTCGATCGTTATTGAAAAACTTATTCATAAAATTGGA 132
|||||||||||||||||| |||||||||| |||||||| ||||||||||||||| |||||
Sbjct 61 GTTTGCTTCGTCTTGCTTTTGATTTCGATTGTTATTGAGAAACTTATTCATAAACTTGGA 120
Query 133 TCCTGGTTTAAAAAG-AAGAACAAAAAAGCTCTATATGAAGCACTTGAAAAAGTGAAAGC 191
||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCTGGTTT-AAGAGTAAGAACAAAAAAGCTCTATATGAAGCACTTGAAAAAGTGAAAGC 179
Query 192 AGAGCTTATGCTGATGGGATTCATATCACTACTTCTAACAATTGGACAAGGATATATCTC 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGAGCTTATGCTGATGGGATTCATATCACTACTTCTAACAATTGGACAAGGATATATCTC 239
Query 252 AAATATTTGCATCCCTAAGAACATCGCAGCATCGATGCACCCTTGTAGTGCATCCgaaga 311
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AAATATTTGCATACCTAAGAACATCGCAGCATCGATGCACCCTTGTAGTGCATCCGAAGA 299
Query 312 agcaagaaagtatggtaagaaagatg-tcccaaaggaagatg-a-a-ga---agaaaaCT 364
|| |||||||| ||||||||||||| | | |||| |||| | | | || |||||| |
Sbjct 300 GGCGAGAAAGTACGGTAAGAAAGATGCTGC-AAAGAAAGACGGAGAAGATGGAGAAAA-T 357
Query 365 T-GCGTCGAAAGCTTCTACAGTTAGTTGATTCTCTTATTCCTCGAAGGAGTTTGGCTACT 423
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TCGCGTCGAAAGCTTCTACAGTTAGTTGATTCTCTTATTCCTCGAAGGAGTTTGGCTACC 417
Query 424 AAAGGTTATGATAAGTGTGCAGAGAAGGGAAAAGTCGCTTTTGTATCGGCTTATGGCATG 483
||||||||||| |||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 418 AAAGGTTATGACAAGTGTGCAGAGAAGGGAAACGTAGCTTTTGTATCGGCTTATGGTATG 477
Query 484 CATCAGCTGCATATATTCATCTTTGTTCTTGCGGTTTGTCATGTGATCTACTGCATTGTT 543
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 478 CATCAGCTGCATATATTCATATTTGTTCTTGCGGTTTGTCATGTGATCTACTGCATTGTC 537
Query 544 ACTTATGCTTTGGGAAAGACCAAAATGAGAAGGTGGAAGA-AGTGGGAAGAGGAGACTAA 602
||||||||||| || |||||||| |||||||||||||||| | |||||||||||||| ||
Sbjct 538 ACTTATGCTTTAGGCAAGACCAAGATGAGAAGGTGGAAGAGA-TGGGAAGAGGAGACGAA 596
Query 603 GACTATCGAATATCAGTATTCACACGATCCCGAGAGGTTTAGGTTTGCGCGGGATACATC 662
||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 597 GACAATCGAATATCAGTATTCACACGATCCCGAGAGGTTTAGATTTGCGAGGGATACATC 656
Query 663 TTTCGGGCGTAGACATCTGAGTTTCTGGAGCAAATCAACTATTACGCTGTGGATTGTATG 722
|||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||
Sbjct 657 TTTCGGGCGTAGACATCTAAATTTCTGGAGCAAATCGACTATTACGCTGTGGATTGTATG 716
Query 723 TTTCTTCAGGCAGTTCTTTAGATCTGTAACCAAAGTTGATTACTTAACACTGAGACATGG 782
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TTTCTTCAGACAGTTCTTTAGATCTGTAACCAAAGTTGATTACTTAACACTGAGACATGG 776
Query 783 TTTCATCATGGCCCATTTGGCTCCTGGGAGCGACGCAAGGTTCGATTTCCGAAAGTATAT 842
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 777 TTTCATCATGGCCCATTTGGCTCCCGGGAGCGACGCAAGATTCGATTTCCGAAAGTATAT 836
Query 843 TCAGAGATCACTAGAGGAAGACTTCAAAACCATTGTCGAGATCAACCCTGTGATCTGGTT 902
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 837 TCAGAGATCATTAGAGGAAGACTTCAAAACCATTGTCGAGATCAATCCTGTGATCTGGTT 896
Query 903 CATAGCTGTGCTATTCCTCCTGACAAACACAAACGGATTGAATTCTTACCTCTGGCTACC 962
||| || ||| ||||||| |||||||||||| |||||||| |||||||||||||| ||||
Sbjct 897 CATCGCCGTGTTATTCCTACTGACAAACACACACGGATTGCATTCTTACCTCTGGTTACC 956
Query 963 GTTCATTCCCTTCATCGTGATTCTTATTGTTGGAACAAAACTTCAAGTGATAATAACAAA 1022
||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 957 GTTCATTCCATTCGTCGTGATTCTTATTGTTGGGACAAAACTTCAAGTGATAATAACAAA 1016
Query 1023 ACTAGGACTTA-GAATCCAAGAGAAAGGCGACGTAGTGAAAGGCACACCGCTAGTTCAAC 1081
||| ||||| | |||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1017 ACTGGGACT-ACGAATCCAAGAGAAAGGTGACGTAGTGAAAGGCACACCGCTAGTTCAGC 1075
Query 1082 CCGGTGATCATTTCTTCTGGTTCGGTCGTCCACGTTTCATTCTCTTCCTCATTCACTTAG 1141
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1076 CCGGTGATCATTTCTTCTGGTTCGGTCGCCCACGTTTCATTCTCTTCCTCATTCACTTAG 1135
Query 1142 TCCTCTTCACGAACGCGTTTCAACTAGCTTTCTTTGTCTGGAGTACGTATGAATTCGGTC 1201
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1136 TCCTCTTCACGAACGCGTTTCAACTCGCTTTCTTTGCCTGGAGTACGTATGAATTCGGTC 1195
Query 1202 TAAAGAACTGTTTCCATGAAAGCAGAGTTGACGTGATCATCAGAATCTCAATCGGACTTT 1261
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1196 TAAAGAACTGTTTCCATGAAAGCAGAGTAGATGTGATCATCAGAATCTCAATCGGACTTA 1255
Query 1262 TAGTTCAGATTCTTTGCAGCTACGTTACTCTTCCTCTATATGCTCTTGTTACTCAAATGG 1321
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1256 TAGTCCAGATTCTTTGCAGCTACGTTACTCTTCCTCTATATGCTCTCGTTACTCAAATGG 1315
Query 1322 GTTCAAAGATGAAACCAACAGTGTTCAACGAGAGAGTAGCAACAGCGTTAAAGAGTTGGC 1381
||||||||||||| |||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 1316 GTTCAAAGATGAAGCCAACAGTATTCAACGAGAGAGTAGCAACGGCATTAAAGAGTTGGC 1375
Query 1382 ATCACACAGCTAAGAAAAATATCAAACATGGAAGAACTTCAGAATCAACAACACCTTTCT 1441
|||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 ATCACACAGCAAAGAAACAGATCAAACATGGAAGAACTTCAGAATCAACAACACCTTTCT 1435
Query 1442 CTAGTAGACCAACAACACCAACTCATGGTTCTTCTCCGATTCATCTCCTTCGTAATGCTC 1501
|||| |||||||||||||||| ||||||||||||||||||||||| || || ||||| |
Sbjct 1436 CTAGCCGACCAACAACACCAACACATGGTTCTTCTCCGATTCATCTTCTCCGAAATGCCC 1495
Query 1502 CTCACAAACGAAGCAGAAGCGTTGACGAAAGCTTTGCGAATTCGTTTTCTCCGAGAAACT 1561
| |||||||||||||||||||| ||||||||||| ||||||||| | ||||| |||||||
Sbjct 1496 CCCACAAACGAAGCAGAAGCGTCGACGAAAGCTTCGCGAATTCGATGTCTCCTAGAAACT 1555
Query 1562 CTGATTTCGATTCGTGGGATCCTGAGTCTCAACATGAAACT-GCTGAGACTTCGAATTCG 1620
||||||||||||| ||||||||||| |||||||| ||| | |||||||||||||||||
Sbjct 1556 CTGATTTCGATTCATGGGATCCTGAATCTCAACACGAAG-TAGCTGAGACTTCGAATTCA 1614
Query 1621 AATCATCGTTCTAGGTTTGGAGAAGAAGAATCGGAGAAAAAGTTTGTTTCTTCATCA--- 1677
||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1615 AATCATCGTTCTAGGGTTGGAGAAGAAGAGTCGGAGAAAAAGTTTGTTTCTTCATCATCT 1674
Query 1678 GTGGAACTTCCTCCTGGACCTGGACAAATACGAACACAGCATGAGATTAGTACTATAAGC 1737
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1675 GTGGAACTTCCTCCAGGACCTGGACAAATACGAACACAGCATGAGATTAGTACTATTAGC 1734
Query 1738 TTAAGGGATTTTTCGTTTAAGCGATGA 1764
|||||||||||||||||||| ||||||
Sbjct 1735 TTAAGGGATTTTTCGTTTAAACGATGA 1761
> Ahg951023 jgi|Araly1|951023|scaffold_802910.1
Length=396
Score = 350 bits (189), Expect = 3e-95
Identities = 283/325 (87%), Gaps = 19/325 (6%)
Strand=Plus/Plus
Query 1318 ATGGGTTCAAAGATGAAACCAACAGTGTTCAACGAGAGAGTAGCAACAGCGTTAAAGAGT 1377
|||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||
Sbjct 23 ATGGGTTCAAAGATGAAACCAACATTGTTCAACGAGAGAGTAGCAACAACATTAAAGAGT 82
Query 1378 TGGCATCACACAGCTAA-GAAA-A-AT-A-TCA--AA-CATGGAAGAACTTCAGAATCAA 1429
|||||||||||| | || |||| | || | | | || ||||||||||||||||||||||
Sbjct 83 TGGCATCACACATC-AATGAAACAGATCAATTATGAAACATGGAAGAACTTCAGAATCAA 141
Query 1430 CAACACCTTTCTCTAGTAGACCAACAACACCAACTCATGGTTCTTCTCCGATTCATCTCC 1489
| | | ||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 142 -A-C-C-TTTCTCTAGCCGACCAACAACACCAACACATGGTTCTTCTCCGATTCATCTCC 197
Query 1490 TTCGTAATGCTCC-TCACAAACGAAGCAGAAGCGTTGACGAAAGCTTTGCGAATTCGTTT 1548
||| |||| ||| ||||||||||||||||||| | || || ||||| | || |||| |
Sbjct 198 TTCACAATG-TCCCTCACAAACGAAGCAGAAGCATCGATGATAGCTTCGTGA-TTCGATG 255
Query 1549 TCTCCGAGAA-A--CTCTGATTTCGATTCGTGGGATCCTGAGTCTCAACATGAAACTGCT 1605
|||||||||| | ||||||||||||||| ||||||| ||| |||||||| |||||||||
Sbjct 256 TCTCCGAGAAGAAACTCTGATTTCGATTCATGGGATCATGAATCTCAACACGAAACTGCT 315
Query 1606 GAGACTTCGAATTCGAATCATCGTT 1630
|||||||||||||| ||||||||||
Sbjct 316 GAGACTTCGAATTCAAATCATCGTT 340
> Ahg931711 jgi|Araly1|931711|scaffold_304168.1
Length=396
Score = 350 bits (189), Expect = 3e-95
Identities = 283/325 (87%), Gaps = 19/325 (6%)
Strand=Plus/Plus
Query 1318 ATGGGTTCAAAGATGAAACCAACAGTGTTCAACGAGAGAGTAGCAACAGCGTTAAAGAGT 1377
|||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||
Sbjct 23 ATGGGTTCAAAGATGAAACCAACATTGTTCAACGAGAGAGTAGCAACAACATTAAAGAGT 82
Query 1378 TGGCATCACACAGCTAA-GAAA-A-AT-A-TCA-AA--CATGGAAGAACTTCAGAATCAA 1429
|||||||||||| | || |||| | || | | | || ||||||||||||||||||||||
Sbjct 83 TGGCATCACACATC-AATGAAACAGATCAATTATAAAACATGGAAGAACTTCAGAATCAA 141
Query 1430 CAACACCTTTCTCTAGTAGACCAACAACACCAACTCATGGTTCTTCTCCGATTCATCTCC 1489
| | | ||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 142 -A-C-C-TTTCTCTAGCCGACCAACAACACCAACACATGGTTCTTCTCCGATTCATCTCC 197
Query 1490 TTCGTAATGCTCC-TCACAAACGAAGCAGAAGCGTTGACGAAAGCTTTGCGAATTCGTTT 1548
||| |||| ||| ||||||||||||||||||| | || || ||||| | || |||| |
Sbjct 198 TTCACAATG-TCCCTCACAAACGAAGCAGAAGCATCGATGATAGCTTCGTGA-TTCGATG 255
Query 1549 TCTCCGAGAA-A--CTCTGATTTCGATTCGTGGGATCCTGAGTCTCAACATGAAACTGCT 1605
|||||||||| | ||||||||||||||| ||||||| ||| |||||||| |||||||||
Sbjct 256 TCTCCGAGAAGAAACTCTGATTTCGATTCATGGGATCATGAATCTCAACACGAAACTGCT 315
Query 1606 GAGACTTCGAATTCGAATCATCGTT 1630
|||||||||||||| ||||||||||
Sbjct 316 GAGACTTCGAATTCAAATCATCGTT 340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72980909420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5