BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61563.1
Length=528
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924873 jgi|Araly1|924873|scaffold_200434.1 339 2e-92
Ahg924871 jgi|Araly1|924871|scaffold_200432.1 274 5e-73
Ahg494981 jgi|Araly1|494981|fgenesh2_kg.8__797__AT1G61566.1 254 6e-67
> Ahg924873 jgi|Araly1|924873|scaffold_200434.1
Length=285
Score = 339 bits (183), Expect = 2e-92
Identities = 233/256 (91%), Gaps = 7/256 (3%)
Strand=Plus/Plus
Query 100 GGAAAAAGAACAATAATAATATGGGGATGTCTAAAAGTATCAAGGTTATCCTATCTCTTG 159
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 GGAAAAAGAACGATAATAATATGGGGATGTCTAAAAGTATCAAGGTTATCCTATCTCTTG 62
Query 160 CTCTTGTAGTGTTCTTGGCACTTGCAGGAACCAAGGTTGAGGCCTCCGTAAGATACATAA 219
||||||||||||||||||| |||||| |||||||||||||||| | ||||||||||
Sbjct 63 CTCTTGTAGTGTTCTTGGCCCTTGCAACAACCAAGGTTGAGGCCAC---AAGATACATAT 119
Query 220 CTTATCCT-GCTATCGAT-CGTGGAGATCATGCTGTACATTGTGACAAAGCCCACCCTAA 277
|||||||| | ||| || | ||||||||||||| |||||||||||||||||||||| |
Sbjct 120 CTTATCCTAG-TATTAATAC-TGGAGATCATGCTCCACATTGTGACAAAGCCCACCCTCA 177
Query 278 CACCTGCAAGAAGAAACAAGCAAATCCTTACAGGAGAGGATGCGGAGTGCTCGAAGGTTG 337
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CACCTGTTGGAAGAAAGAAGCAAATCCTTACAGGAGAGGATGCGGAGTGCTCGAAGGTTG 237
Query 338 CCATCGTGAAACAGGT 353
|||||||||||| |||
Sbjct 238 CCATCGTGAAACTGGT 253
> Ahg924871 jgi|Araly1|924871|scaffold_200432.1
Length=289
Score = 274 bits (148), Expect = 5e-73
Identities = 213/244 (87%), Gaps = 6/244 (2%)
Strand=Plus/Plus
Query 97 TGTGGAAAAAGAACAATAATAATATGGGGATGTCTAAAAGTATCAAGGTTATCCTATCTC 156
||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1 TGTGGAAGAAGAAGAATAA-AATATGGGGATGTCTAAAAGTATCAAGGTTATTCTATCTC 59
Query 157 TTGCTCTTGTAGTGTTCTTGGCACTTGCAGGAACCAAGGTTGAGGCCTCCGTAAGATACA 216
||||||| || ||||| ||||| |||||| || ||||||||||||| | ||||||||
Sbjct 60 TTGCTCTCGTCGTGTTTTTGGCCCTTGCATCAATCAAGGTTGAGGCCAC---AAGATACA 116
Query 217 TAACTTATCCT-GCTATCGATCGTGGAGATCATGCTGTACATTGTGACAAAGCCCACCCT 275
||||||||||| | ||| ||| ||||||||||||| ||||||||| ||||||||||||
Sbjct 117 TAACTTATCCTAG-TATAAATCATGGAGATCATGCTACACATTGTGATAAAGCCCACCCT 175
Query 276 AACACCTGCAAGAAGAAACAAGCAAATCCTTACAGGAGAGGATGCGGAGTGCTCGAAGGT 335
||||| |||||||||||| ||||||||||||||| |||||||||| | | |||||| ||
Sbjct 176 AACACGTGCAAGAAGAAAGAAGCAAATCCTTACAAAAGAGGATGCGAAATACTCGAACGT 235
Query 336 TGCC 339
||||
Sbjct 236 TGCC 239
> Ahg494981 jgi|Araly1|494981|fgenesh2_kg.8__797__AT1G61566.1
Length=341
Score = 254 bits (137), Expect = 6e-67
Identities = 190/215 (88%), Gaps = 5/215 (2%)
Strand=Plus/Plus
Query 120 ATGGGGATGTCTAAAAGTATCAAGGTTATCCTATCTCTTGCTCTTGTAGTGTTCTTGGCA 179
||||||||||| ||||||||||||||||| |||||||||||||| ||| |||| ||||||
Sbjct 1 ATGGGGATGTCAAAAAGTATCAAGGTTATTCTATCTCTTGCTCTCGTACTGTTTTTGGCA 60
Query 180 CTTGCAGGAACCAAGGTTGAGGCCTCCGTAAGATACATAACTTATCCTGCTATCGATCGT 239
|||||| |||||||||||||||| | ||||||||||| ||||| || ||| ||| |
Sbjct 61 CTTGCAACAACCAAGGTTGAGGCC-AC--AAGATACATAAGTTATCGTGGTATTAATCAT 117
Query 240 GGAGATCATGCTGTACATTGTGACAAAGCCCACCCTAACACCTGCAAGAAGAAACAAGCA 299
|||||||||||| ||||||||||||||||||||||||| || ||||||||| || |||||
Sbjct 118 GGAGATCATGCTATACATTGTGACAAAGCCCACCCTAATACATGCAAGAAGCAAGAAGCA 177
Query 300 AATCCTTACAGGAGAGGATGCGG-AGTGCTCGAAG 333
||||||||||||||||||||||| | ||||||||
Sbjct 178 AATCCTTACAGGAGAGGATGCGGGAC-GCTCGAAG 211
Score = 106 bits (57), Expect = 2e-22
Identities = 87/100 (87%), Gaps = 8/100 (8%)
Strand=Plus/Plus
Query 418 TTATTTGTATACACTCTTTACATCCTCATATTCATCTGTTAATTTGGCTTTGTAATTGAT 477
|||||| ||||||| ||||||||||||||||||| || ||||||||||||||||||
Sbjct 248 TTATTTATATACACACTTTACATCCTCATATTCA----TT--TTTGGCTTTGTAATTGAT 301
Query 478 TGTAATCACATCG-TGTTATGGTCAATCATATATAAATAT 516
||||||||||| | ||||||| ||||||||| ||| ||||
Sbjct 302 TGTAATCACAT-GATGTTATGATCAATCATAAATATATAT 340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19230416856
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5