BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61566.1
Length=551
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924871 jgi|Araly1|924871|scaffold_200432.1 305 2e-82
Ahg924873 jgi|Araly1|924873|scaffold_200434.1 291 5e-78
Ahg494981 jgi|Araly1|494981|fgenesh2_kg.8__797__AT1G61566.1 257 5e-68
> Ahg924871 jgi|Araly1|924871|scaffold_200432.1
Length=289
Score = 305 bits (165), Expect = 2e-82
Identities = 221/246 (90%), Gaps = 11/246 (4%)
Strand=Plus/Plus
Query 104 AAGAACAATAATAATATGGGGATGTCTAAAAGTATCAAGGTTA-TCTTATCTCTTGCTCT 162
||||| ||||| ||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 9 AAGAAGAATAA-AATATGGGGATGTCTAAAAGTATCAAGGTTATTC-TATCTCTTGCTCT 66
Query 163 CGTAGTGTTCTTGGCCCTTGC-TGCAACCAAGGTTGAGGCCACAAGATACATAACTTATC 221
||| ||||| ||||||||||| | ||| ||||||||||||||||||||||||||||||||
Sbjct 67 CGTCGTGTTTTTGGCCCTTGCAT-CAATCAAGGTTGAGGCCACAAGATACATAACTTATC 125
Query 222 CT-GCTATCGATCGTGGAGATCATGCTGTACATTGTGACAAAGCCCACCCTAACACCTGC 280
|| | ||| ||| ||||||||||||| ||||||||| ||||||||||||||||| |||
Sbjct 126 CTAG-TATAAATCATGGAGATCATGCTACACATTGTGATAAAGCCCACCCTAACACGTGC 184
Query 281 AAGAAGAAAGAAGCAAATCCTTACCAGAGAGGATGCGAGAAGA-TC-AATCGTTGCCGTG 338
|||||||||||||||||||||||| | ||||||||||| || | || || ||||||||||
Sbjct 185 AAGAAGAAAGAAGCAAATCCTTACAAAAGAGGATGCGA-AATACTCGAA-CGTTGCCGTG 242
Query 339 GTGGAT 344
||||||
Sbjct 243 GTGGAT 248
Score = 63.9 bits (34), Expect = 1e-09
Identities = 36/37 (97%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 374 CCCAAGAGCATAAAATATACATCAATACATTATCTAT 410
||||||||||||||||||||||||||||||||| |||
Sbjct 253 CCCAAGAGCATAAAATATACATCAATACATTATTTAT 289
> Ahg924873 jgi|Araly1|924873|scaffold_200434.1
Length=285
Score = 291 bits (157), Expect = 5e-78
Identities = 202/223 (91%), Gaps = 6/223 (3%)
Strand=Plus/Plus
Query 98 CGGATAAAGAACAATAATAATATGGGGATGTCTAAAAGTATCAAGGTTATCTTATCTCTT 157
|||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2 CGGAAAAAGAACGATAATAATATGGGGATGTCTAAAAGTATCAAGGTTATCCTATCTCTT 61
Query 158 GCTCTCGTAGTGTTCTTGGCCCTTGCTGCAACCAAGGTTGAGGCCACAAGATACATAACT 217
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 62 GCTCTTGTAGTGTTCTTGGCCCTTGCAACAACCAAGGTTGAGGCCACAAGATACATATCT 121
Query 218 TATCCT-GCTATCGAT-CGTGGAGATCATGCTGTACATTGTGACAAAGCCCACCCTAACA 275
|||||| | ||| || | ||||||||||||| |||||||||||||||||||||| |||
Sbjct 122 TATCCTAG-TATTAATAC-TGGAGATCATGCTCCACATTGTGACAAAGCCCACCCTCACA 179
Query 276 CCTGCAAGAAGAAAGAAGCAAATCCTTACCAG-AGAGGATGCG 317
|||| |||||||||||||||||||||| || ||||||||||
Sbjct 180 CCTGTTGGAAGAAAGAAGCAAATCCTTAC-AGGAGAGGATGCG 221
> Ahg494981 jgi|Araly1|494981|fgenesh2_kg.8__797__AT1G61566.1
Length=341
Score = 257 bits (139), Expect = 5e-68
Identities = 181/201 (90%), Gaps = 4/201 (2%)
Strand=Plus/Plus
Query 119 ATGGGGATGTCTAAAAGTATCAAGGTTA-TCTTATCTCTTGCTCTCGTAGTGTTCTTGGC 177
||||||||||| |||||||||||||||| || ||||||||||||||||| |||| |||||
Sbjct 1 ATGGGGATGTCAAAAAGTATCAAGGTTATTC-TATCTCTTGCTCTCGTACTGTTTTTGGC 59
Query 178 CCTTGCTGCAACCAAGGTTGAGGCCACAAGATACATAACTTATCCTGCTATCGATCGTGG 237
||||| |||||||||||||||||||||||||||||| ||||| || ||| ||| |||
Sbjct 60 ACTTGCAACAACCAAGGTTGAGGCCACAAGATACATAAGTTATCGTGGTATTAATCATGG 119
Query 238 AGATCATGCTGTACATTGTGACAAAGCCCACCCTAACACCTGCAAGAAGAAAGAAGCAAA 297
|||||||||| ||||||||||||||||||||||||| || ||||||||| ||||||||||
Sbjct 120 AGATCATGCTATACATTGTGACAAAGCCCACCCTAATACATGCAAGAAGCAAGAAGCAAA 179
Query 298 TCCTTACCAG-AGAGGATGCG 317
||||||| || ||||||||||
Sbjct 180 TCCTTAC-AGGAGAGGATGCG 199
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20107995403
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5