BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61570.1
Length=499
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924869 jgi|Araly1|924869|scaffold_200430.1 350 7e-96
> Ahg924869 jgi|Araly1|924869|scaffold_200430.1
Length=302
Score = 350 bits (189), Expect = 7e-96
Identities = 265/299 (89%), Gaps = 16/299 (5%)
Strand=Plus/Plus
Query 19 GACTTTTgagagagagagagaAGAAATGGATTCATACTCTTCGCCGCCGATGGGAGGTTC 78
||| ||||||||| | | | || |||||||||||||||||||||||||| ||||||| |
Sbjct 1 GAC-TTTGAGAGA-A-A-AAAAAAAATGGATTCATACTCTTCGCCGCCGGTGGGAGG-T- 54
Query 79 AGGTAG-TTCGGTTTCGCCCGAAGTAATGATGGAGTC-GGTCAAGACTCAGCTCGCTCAA 136
||| | |||| ||||||||||||| |||||||| | ||||||||| || |||||||||
Sbjct 55 -GGT-GCTTCGCCTTCGCCCGAAGTACTGATGGAG-CAGGTCAAGACACAACTCGCTCAA 111
Query 137 GCTTACGCCGAAGAGTTAATCGAGACTTTGAG-GACAAAATGTTTTGACAAGTGCGTAAC 195
||||||||||||||||| ||||||||| |||| | |||||||||||| |||||| ||||
Sbjct 112 GCTTACGCCGAAGAGTTCATCGAGACTGTGAGAGT-AAAATGTTTTGATAAGTGCATAAC 170
Query 196 GAAGCCAGGATCAAGCCTCGGTGGAAGTGAGAGTAGCTGTATTTCGAGATG-TGTTGAAC 254
|||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| |
Sbjct 171 GAAGCCAGGATCAAGCCTCGGTGGGAGTGAGAGTAGCTGTATTTCGAGATGCT-TTGATC 229
Query 255 GTTACATGGAAGCTACTGCAATCATAAGTCGTTCTCTTTTCACTCAACGTTGA-TCAAT 312
||||||| |||||||||| |||||||||||||||||||||||| ||||||||| |||||
Sbjct 230 GTTACATTGAAGCTACTGGAATCATAAGTCGTTCTCTTTTCACCCAACGTTGAATCAAT 288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18123904775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5