BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61580.1
Length=1354
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475169 jgi|Araly1|475169|fgenesh2_kg.2__299__AT1G61580.1 1788 0.0
Ahg902873 jgi|Araly1|902873|Al_scaffold_0003_1 187 2e-46
Ahg943772 jgi|Araly1|943772|scaffold_700001.1 137 2e-31
> Ahg475169 jgi|Araly1|475169|fgenesh2_kg.2__299__AT1G61580.1
Length=1226
Score = 1788 bits (968), Expect = 0.0
Identities = 1146/1232 (93%), Gaps = 11/1232 (1%)
Strand=Plus/Plus
Query 34 TTAAAGAATGTCTCACAGAAAGTTTGAGCATCCAAGACATGGTTCTTTGGGTTTCCTTCC 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTAAAGAATGTCTCACAGAAAGTTTGAGCATCCAAGACATGGTTCTTTGGGTTTCCTTCC 60
Query 94 AAGGAAAAGAGCTAGCCGACACCGTGGGAAAGTGAAGGCCTTCCCTAAGGATGATCCAAC 153
|||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 61 AAGGAAAAGAGCTAACCGACACCGTGGTAAAGTGAAGGCGTTCCCTAAGGATGATCCAAC 120
Query 154 TAAGCCTTGCAGACTCACCTCCTTCTTGGGATACAAAGCTGGGATGACTCACATTGTGAG 213
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TAAGCCTTGCAGACTCACATCCTTCTTGGGATACAAAGCTGGGATGACTCACATTGTGAG 180
Query 214 AGATGTTGAAAAACCTGGATCAAAACTACACAAGAAGGAAACATGTGAAGCTGTGACGAT 273
||| |||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 181 AGAAGTTGAAAAACCTGGATCAAAGCTCCACAAGAAGGAAACATGTGAAGCTGTGACTAT 240
Query 274 CATTGAGACACCTCCAATGGTGGTTGTTGGTGTGGTTGGTTATGTAAAGACACCTCGTGG 333
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 241 AATTGAGACACCTCCAATGGTGGTTGTTGGTGTGGTTGGGTATGTGAAGACACCTCGTGG 300
Query 334 TCTGCGGTCTCTATGCACTGTGTGGGCTCAGCATCTGAGCGAAGAATTGAGAAGGAGGTT 393
|||||| |||||| ||||||||||||||||||||||||| |||||| |||| ||||||||
Sbjct 301 TCTGCGTTCTCTAAGCACTGTGTGGGCTCAGCATCTGAGTGAAGAAGTGAGGAGGAGGTT 360
Query 394 CTACAAGAACTGGGCCAAGTCAAAGAAGAAGGCTTTCACTAGATATTCTAAGAAACATGA 453
|||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||
Sbjct 361 TTACAAGAACTGGGCCAAGTCAAAGAAGAAGGCTTTCACTAAATACTCGAAGAAACATGA 420
Query 454 AACTGAAGAAGGGAAAAAAGATATTCAAAGTCAATTGGAGAAGATGAAGAAGTACTGCTC 513
|||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||| |
Sbjct 421 AACTGATGAAGGTAAAAAAGACATTCAAAGTCAATTGGAGAAGATGAAAAAGTACTGCAC 480
Query 514 TGTCATCAGAGTTCTTGCTCACACTCAGATAAGGAAAATGAAAGGGCTGAAGCAGAAGAA 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGTCATCAGAGTTCTTGCTCACACTCAGATAAGGAAAATGAAAGGGCTGAAGCAGAAGAA 540
Query 574 GGCACATCTGAATGAGATTCAGATCAATGGTGGAGATATAGCAAAGAAAGTTGACTATGC 633
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 541 GGCACATCTGAATGAGATTCAGATCAATGGTGGAGATATAGCAAAGAAGGTTGACTTTGC 600
Query 634 CTGCAGTTTATTTGAAAAACAAGTCCCAGTTGATGCCATCTTCCAGAAAGATGAAATGAT 693
||||||||| || || || ||||| || || |||||||| ||||||||||||||||||||
Sbjct 601 CTGCAGTTTGTTCGAGAAGCAAGTTCCTGTAGATGCCATTTTCCAGAAAGATGAAATGAT 660
Query 694 TGATATCATTGGTGTCACCAAAGGAAAAGGTTATGAAGGTGTGGTTACAAGATGGGGAGT 753
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 661 CGATATCATTGGTGTCACCAAAGGAAAAGGGTATGAAGGTGTGGTAACAAGATGGGGTGT 720
Query 754 GACCCGACTTCCAAGAAAGACTCATCGTGGTCTTCGCAAGGTTGCTTGTATCGGTGCTTG 813
|||||| |||||||| ||||||||||| || || || ||||| || ||||| ||||| ||
Sbjct 721 GACCCGTCTTCCAAGGAAGACTCATCGAGGACTCCGAAAGGTGGCCTGTATTGGTGCCTG 780
Query 814 GCATCCAGCTAGAGTCTCCTACACGGTGGCTAGAGCTGGACAAAACGGTTACCATCACCG 873
|||||||||| ||||||||||||| |||||||||||||| ||||| || ||||| |||||
Sbjct 781 GCATCCAGCTCGAGTCTCCTACACAGTGGCTAGAGCTGGGCAAAATGGGTACCACCACCG 840
Query 874 TACTGAAATGAACAAGAAGGTATACCGGGTTGGGAAAGTTGGCCAGGAGACTCACTCAGC 933
|||||| |||||||||||| | ||||||||||||||||||||||| |||||||||| ||
Sbjct 841 TACTGAGATGAACAAGAAGATTTACCGGGTTGGGAAAGTTGGCCAAGAGACTCACTTGGC 900
Query 934 CATGACCGAGTATGACAGAACCGAGAAGGATATCACACCAATGGGAGGATTTCCCCACTA 993
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 901 CATGACTGAGTACGACAGAACCGAGAAGGATATCACACCAATGGGAGGATTTCCACACTA 960
Query 994 TGGGATAGTGAAGGAAGATTATTTGATGATCAAGGGATGTTGCGTGGGGCCTAAGAAACG 1053
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 961 TGGGGTAGTGAAGGAAGATTATTTGATGATCAAGGGAGGTTGCGTGGGGCCTAAGAAACG 1020
Query 1054 TGTGGTGACTTTAAGACAGACTTTGCTT-AAGCAGACGTCTAGGCTTGCTATGGAGGAGA 1112
||||||||||||||||||||||||| || ||||||||||||||| |||||| ||||||||
Sbjct 1021 TGTGGTGACTTTAAGACAGACTTTG-TTGAAGCAGACGTCTAGGGTTGCTACGGAGGAGA 1079
Query 1113 TCAAGCTTAAGTTCATTGACGCTG-CTTCCAA-TGGGGGACACGGTCGTTTCCAGACTTC 1170
|||| ||||||||||||||| || ||||||| | ||| ||||||||||||||||||||
Sbjct 1080 TCAATCTTAAGTTCATTGACA-TGTCTTCCAAATTTGGG-CACGGTCGTTTCCAGACTTC 1137
Query 1171 TCAAGAGAAGGCCAAGTTCTATGGTAGAA-CCATCAAAGCTTAGATTTCTAAGTAttttg 1229
|||||||||||||||||||||| || || |||||||||||||||||||||||||||| |
Sbjct 1138 TCAAGAGAAGGCCAAGTTCTATAATA-AAGCCATCAAAGCTTAGATTTCTAAGTATTT-G 1195
Query 1230 ttgttttt-tgagtttctttctttggtgtttg 1260
|||||||| | |||||||||||||| ||||||
Sbjct 1196 TTGTTTTTCT-AGTTTCTTTCTTTGTTGTTTG 1226
> Ahg902873 jgi|Araly1|902873|Al_scaffold_0003_1
Length=237
Score = 187 bits (101), Expect = 2e-46
Identities = 192/233 (82%), Gaps = 17/233 (7%)
Strand=Plus/Plus
Query 176 TTCTTGGGATACAAAGCTGGGATGACTCACATTGTGAGAGATGTTGAAAAACCTGGATCA 235
||||||||||||||||||||||||||||||||||||||||| || | ||| |||||||||
Sbjct 16 TTCTTGGGATACAAAGCTGGGATGACTCACATTGTGAGAGAAGTAGTAAAGCCTGGATCA 75
Query 236 AAAC-TACACAAGAAGGAAACATGTGAAGCTGTGACGATCATTGAGACACCTCCAATGGT 294
| | | |||||| ||||||||||||||||||| || || |||||||||||||| |||||
Sbjct 76 CAGCAT-CACAAGGAGGAAACATGTGAAGCTGTTACTATGATTGAGACACCTCCGATGGT 134
Query 295 GGTTGTTGGTGTGGTTGGTTATGTAAAGACACCTCGT-GGTCTGCGGT-CTCTATGCACT 352
||||||||| || | | | || || ||| || || ||| | | ||| | | |||
Sbjct 135 GGTTGTTGG-GTAC--G-T---G-AA-GATACC-CGACGGCCTGAG-TACTCGAAGTACT 183
Query 353 GTGTGGGCTCAGCATCTGAGCGAAGAATTGA-GAAGGAGGTTCTACAAGAACT 404
||||||||||||||| |||| |||||| | | | |||||||||||||||||||
Sbjct 184 GTGTGGGCTCAGCATTTGAGTGAAGAAGT-ACGGAGGAGGTTCTACAAGAACT 235
> Ahg943772 jgi|Araly1|943772|scaffold_700001.1
Length=224
Score = 137 bits (74), Expect = 2e-31
Identities = 96/107 (90%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 540 AGATAAGGAAAATGAAAGGGCTGAAGCAGAAGAAGGCACATCTGAATGAGATTCAGATCA 599
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 10 AGATAAGGAAAATGAAAGGGCTGAAGCAGAAGAAGGCTCATCTAAATGAGATTCAAATCA 69
Query 600 ATGGTGGAGATATAGCAAAGAAAGTTGACTATGCCTGCAGTTTATTT 646
|||| |||||| |||| ||||| |||| ||||||| |||||| |||
Sbjct 70 ATGGCGGAGATGTAGCTAAGAAGGTTGTCTATGCCCACAGTTTCTTT 116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50665356693
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5