BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61590.1
Length=1517
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475168 jgi|Araly1|475168|fgenesh2_kg.2__298__AT1G61590.1 2060 0.0
> Ahg475168 jgi|Araly1|475168|fgenesh2_kg.2__298__AT1G61590.1
Length=1457
Score = 2060 bits (1115), Expect = 0.0
Identities = 1256/1325 (95%), Gaps = 6/1325 (0%)
Strand=Plus/Plus
Query 32 aaaaaCATTTAGTTAAATCCAATGAGAGACTCTTCAACAACTGCATCCACCAAATCCTCA 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAACATTTAGTTAAATCCAATGAGAGACTCTTCAACAACTGCATCCACCAAATCCTCA 60
Query 92 CCGTTATGGAAACCCTTTGCCTCAAACTGTTGTTCCGTTGATGACCAAACCGTCTTTGGC 151
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 61 CCGTTATGGAAACCCTTTGCCTCAAACTGTTGTTCCGTTGACGACCAAACCATCTTTGGC 120
Query 152 AATCTCAGCCGTTGCCGACCTTCGAGATCAGAATTCTCCAAGAACCATCTCGGACCACTT 211
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AATTTCAGCCGTTGCCGACCTTCGAGATCAGAATTCTCCAAGAACCATCTCGGACCACTT 180
Query 212 CCTTCTTTTCGGCGACTCTCCTTT-GCTGATCTAAGCCGTTCTTCTTCGGCTAGGATCAA 270
|||||||| || || |||| |||| ||||||||||||| ||||| ||||||||||||||
Sbjct 181 CCTTCTTTCCGCCGGCTCT-CTTTCACTGATCTAAGCCGGTCTTCGTCGGCTAGGATCAA 239
Query 271 TGAAGATCTTGCACAGACTCTTGGAGCCGACTTAGTGGATTTTCAGATGTGTGAACTCAA 330
|||||||| ||||||||||| ||||| || |||||||||||||||||||||||||| ||
Sbjct 240 CGAAGATCTGGCACAGACTCTCGGAGCTGATTTAGTGGATTTTCAGATGTGTGAACTGAA 299
Query 331 GATGATCACTCAGAGTTTCTCCGGGAACTATCTTCTCGGAGAAGGTGGGTTCGGTAAAGT 390
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 300 GATGATCACTCAGAGTTTCTCCGGGAACTATCTTCTAGGAGAAGGTGGGTTTGGTAAAGT 359
Query 391 GTATAAAGGTTATGTTGATGATTATCTCCGACAAAGTCTCAAGGCTCAGCCTGTTGCTGT 450
|||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||
Sbjct 360 GTATAAAGGTTATGTTCATGAGAATCTCCGACAAAGCCTCAAGGCTCAGCCTGTTGCTGT 419
Query 451 CAAGCTATTGGACATTGAGGGGCTTCAAGGACATCGTGAATGGCTTTCTGAGGTCATATT 510
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 420 CAAGTTATTGGACATTGAAGGGCTTCAAGGACATCGTGAATGGCTTTCTGAGGTCATACT 479
Query 511 TCTTGGACAGCTAAAACACCCGAATTTAGTCAAACTTATTGGTTACTGCTGCGAAGAAGA 570
||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 480 TCTTGGACAATTAAAGCACCCGAATTTAGTCAAACTTATTGGCTACTGCTGCGAAGAAGA 539
Query 571 GGAACGAGTACTCATCTACGAGTTTATGCCACGTGGTAGCCTAGAAAATCACCTCTTCAG 630
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 540 GGAACGAGTACTCATCTACGAGTTTATGTCACGTGGTAGCCTAGAAAATCACCTCTTCAG 599
Query 631 ACGGATATCACTATCGTTGCCGTGGGCGACGCGGCTGAAGATAGCGGTCGCAGCTGCTAA 690
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 600 ACGGATATCACTATCGTTGCCGTGGGCGACGCGGCTGAAGATCGCGGTCGCAGCTGCTAA 659
Query 691 GGGTTTGGCGTTTTTGCATGATTTGGAGAGTCCAATCATTTACCGTGATTTCAAAACTTC 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGGTTTGGCGTTTTTGCATGATTTGGAGAGTCCAATCATTTACCGTGATTTCAAAACTTC 719
Query 751 TAATATACTACTTGATTCGGATTTTACTGCAAAACTCTCAGATTTTGGGTTGGCAAAAAT 810
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 720 TAATATACTACTTGATTCGGATTTTACTGCAAAACTCTCAGATTTTGGTTTGGCAACAAT 779
Query 811 GGGACCAGAAGGATCCAAATCTCATGTCACAACTCGAGTCATGGGCACTTATGGTTATGC 870
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 780 GGGGCCAGAAGGATCCAAATCTCATGTCACAACTCGAGTCATGGGTACTTATGGTTATGC 839
Query 871 TGCTCCTGAATATGTTTCAACAGGGCATTTAACAACAAAGAGTGACGTGTATAGTTATGG 930
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 840 TGCTCCTGAATATGTTTCAACAGGGCATTTAACGACAAAGAGTGACGTGTATAGTTATGG 899
Query 931 CGTCGTTTTACTCGAGCTCCTAACGGGAAGAAGAGCCACAGAAAAGTCACGGCCAAAAAA 990
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 900 CGTCGTTTTACTCGAGCTCCTAACGGGAAGAAGAGCCACAGAAAAGGCACGACCAAAAAA 959
Query 991 CCAGCAGAACATCATCGACTGGTCAAAGCCTTATCTAACAAGCAGCCGCCGACTCCGATG 1050
||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 960 CCAGCAGAACATCATCGACTGGTCAAAGCCTTACCTAACGAGCAGCCGCCGTCTCCGATG 1019
Query 1051 TGTTATGGACCCGAGGCTCGCTGGACAATACTCCGTCAAGGCGGCTAAAGATACAGCTCT 1110
|||||||||||| || ||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 1020 TGTTATGGACCCAAGACTCGCCGGGCAATACTCAGTCAAGGCGGCTAAAGATACAGCTCT 1079
Query 1111 TCTAGCCTTACAATGTGTGAGCCCAAACCCTAAAGACCGGCCCAAAATGCTTGCCGTTGT 1170
||| || ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 1080 TCTCGCATTACAATGTGTGAGCCCTAACCCTAAAGACCGGCCCAAGATGCTTGCCGTAGT 1139
Query 1171 GGAAGCTCTAGAGAGTCTCATACATTATAAGGACATGGCGGTTTCTTCTGGTCATTGGCC 1230
||||| ||||||||||||||| ||| |||||||||||||||||||||| ||||| |||||
Sbjct 1140 GGAAGTTCTAGAGAGTCTCATGCATCATAAGGACATGGCGGTTTCTTCGGGTCACTGGCC 1199
Query 1231 ACTGTCTCCTAAATCTCAGGGCGGGAAGGTTTCCCCGAAGGTTCGAGGGGATCATCGGAG 1290
||| |||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||
Sbjct 1200 ACTTTCTCCTAAATCTCAAGGCGGAAAGGTTTCGGCGAAGGTTCGAGGGGATAATCGGAG 1259
Query 1291 TGGTAGAAAATCAGCTCCGGGTTCGTTAAGATCGTGAACT---TAGGGTTGAATGACCTT 1347
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1260 TGGTAGGAAATCAGCTCCGGGTTCGTTAAGATCGTGAACTAAATAGGGTTGAATGAACTT 1319
Query 1348 A-Taa 1351
| |||
Sbjct 1320 AATAA 1324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56792555295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5