BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G61590.1 Length=1517 Score E Sequences producing significant alignments: (Bits) Value Ahg475168 jgi|Araly1|475168|fgenesh2_kg.2__298__AT1G61590.1 2060 0.0 > Ahg475168 jgi|Araly1|475168|fgenesh2_kg.2__298__AT1G61590.1 Length=1457 Score = 2060 bits (1115), Expect = 0.0 Identities = 1256/1325 (95%), Gaps = 6/1325 (0%) Strand=Plus/Plus Query 32 aaaaaCATTTAGTTAAATCCAATGAGAGACTCTTCAACAACTGCATCCACCAAATCCTCA 91 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAAAACATTTAGTTAAATCCAATGAGAGACTCTTCAACAACTGCATCCACCAAATCCTCA 60 Query 92 CCGTTATGGAAACCCTTTGCCTCAAACTGTTGTTCCGTTGATGACCAAACCGTCTTTGGC 151 ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 61 CCGTTATGGAAACCCTTTGCCTCAAACTGTTGTTCCGTTGACGACCAAACCATCTTTGGC 120 Query 152 AATCTCAGCCGTTGCCGACCTTCGAGATCAGAATTCTCCAAGAACCATCTCGGACCACTT 211 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AATTTCAGCCGTTGCCGACCTTCGAGATCAGAATTCTCCAAGAACCATCTCGGACCACTT 180 Query 212 CCTTCTTTTCGGCGACTCTCCTTT-GCTGATCTAAGCCGTTCTTCTTCGGCTAGGATCAA 270 |||||||| || || |||| |||| ||||||||||||| ||||| |||||||||||||| Sbjct 181 CCTTCTTTCCGCCGGCTCT-CTTTCACTGATCTAAGCCGGTCTTCGTCGGCTAGGATCAA 239 Query 271 TGAAGATCTTGCACAGACTCTTGGAGCCGACTTAGTGGATTTTCAGATGTGTGAACTCAA 330 |||||||| ||||||||||| ||||| || |||||||||||||||||||||||||| || Sbjct 240 CGAAGATCTGGCACAGACTCTCGGAGCTGATTTAGTGGATTTTCAGATGTGTGAACTGAA 299 Query 331 GATGATCACTCAGAGTTTCTCCGGGAACTATCTTCTCGGAGAAGGTGGGTTCGGTAAAGT 390 |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 300 GATGATCACTCAGAGTTTCTCCGGGAACTATCTTCTAGGAGAAGGTGGGTTTGGTAAAGT 359 Query 391 GTATAAAGGTTATGTTGATGATTATCTCCGACAAAGTCTCAAGGCTCAGCCTGTTGCTGT 450 |||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||| Sbjct 360 GTATAAAGGTTATGTTCATGAGAATCTCCGACAAAGCCTCAAGGCTCAGCCTGTTGCTGT 419 Query 451 CAAGCTATTGGACATTGAGGGGCTTCAAGGACATCGTGAATGGCTTTCTGAGGTCATATT 510 |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| | Sbjct 420 CAAGTTATTGGACATTGAAGGGCTTCAAGGACATCGTGAATGGCTTTCTGAGGTCATACT 479 Query 511 TCTTGGACAGCTAAAACACCCGAATTTAGTCAAACTTATTGGTTACTGCTGCGAAGAAGA 570 ||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 480 TCTTGGACAATTAAAGCACCCGAATTTAGTCAAACTTATTGGCTACTGCTGCGAAGAAGA 539 Query 571 GGAACGAGTACTCATCTACGAGTTTATGCCACGTGGTAGCCTAGAAAATCACCTCTTCAG 630 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 540 GGAACGAGTACTCATCTACGAGTTTATGTCACGTGGTAGCCTAGAAAATCACCTCTTCAG 599 Query 631 ACGGATATCACTATCGTTGCCGTGGGCGACGCGGCTGAAGATAGCGGTCGCAGCTGCTAA 690 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 600 ACGGATATCACTATCGTTGCCGTGGGCGACGCGGCTGAAGATCGCGGTCGCAGCTGCTAA 659 Query 691 GGGTTTGGCGTTTTTGCATGATTTGGAGAGTCCAATCATTTACCGTGATTTCAAAACTTC 750 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 GGGTTTGGCGTTTTTGCATGATTTGGAGAGTCCAATCATTTACCGTGATTTCAAAACTTC 719 Query 751 TAATATACTACTTGATTCGGATTTTACTGCAAAACTCTCAGATTTTGGGTTGGCAAAAAT 810 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 720 TAATATACTACTTGATTCGGATTTTACTGCAAAACTCTCAGATTTTGGTTTGGCAACAAT 779 Query 811 GGGACCAGAAGGATCCAAATCTCATGTCACAACTCGAGTCATGGGCACTTATGGTTATGC 870 ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 780 GGGGCCAGAAGGATCCAAATCTCATGTCACAACTCGAGTCATGGGTACTTATGGTTATGC 839 Query 871 TGCTCCTGAATATGTTTCAACAGGGCATTTAACAACAAAGAGTGACGTGTATAGTTATGG 930 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 840 TGCTCCTGAATATGTTTCAACAGGGCATTTAACGACAAAGAGTGACGTGTATAGTTATGG 899 Query 931 CGTCGTTTTACTCGAGCTCCTAACGGGAAGAAGAGCCACAGAAAAGTCACGGCCAAAAAA 990 |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct 900 CGTCGTTTTACTCGAGCTCCTAACGGGAAGAAGAGCCACAGAAAAGGCACGACCAAAAAA 959 Query 991 CCAGCAGAACATCATCGACTGGTCAAAGCCTTATCTAACAAGCAGCCGCCGACTCCGATG 1050 ||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| Sbjct 960 CCAGCAGAACATCATCGACTGGTCAAAGCCTTACCTAACGAGCAGCCGCCGTCTCCGATG 1019 Query 1051 TGTTATGGACCCGAGGCTCGCTGGACAATACTCCGTCAAGGCGGCTAAAGATACAGCTCT 1110 |||||||||||| || ||||| || |||||||| |||||||||||||||||||||||||| Sbjct 1020 TGTTATGGACCCAAGACTCGCCGGGCAATACTCAGTCAAGGCGGCTAAAGATACAGCTCT 1079 Query 1111 TCTAGCCTTACAATGTGTGAGCCCAAACCCTAAAGACCGGCCCAAAATGCTTGCCGTTGT 1170 ||| || ||||||||||||||||| |||||||||||||||||||| ||||||||||| || Sbjct 1080 TCTCGCATTACAATGTGTGAGCCCTAACCCTAAAGACCGGCCCAAGATGCTTGCCGTAGT 1139 Query 1171 GGAAGCTCTAGAGAGTCTCATACATTATAAGGACATGGCGGTTTCTTCTGGTCATTGGCC 1230 ||||| ||||||||||||||| ||| |||||||||||||||||||||| ||||| ||||| Sbjct 1140 GGAAGTTCTAGAGAGTCTCATGCATCATAAGGACATGGCGGTTTCTTCGGGTCACTGGCC 1199 Query 1231 ACTGTCTCCTAAATCTCAGGGCGGGAAGGTTTCCCCGAAGGTTCGAGGGGATCATCGGAG 1290 ||| |||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||| Sbjct 1200 ACTTTCTCCTAAATCTCAAGGCGGAAAGGTTTCGGCGAAGGTTCGAGGGGATAATCGGAG 1259 Query 1291 TGGTAGAAAATCAGCTCCGGGTTCGTTAAGATCGTGAACT---TAGGGTTGAATGACCTT 1347 |||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct 1260 TGGTAGGAAATCAGCTCCGGGTTCGTTAAGATCGTGAACTAAATAGGGTTGAATGAACTT 1319 Query 1348 A-Taa 1351 | ||| Sbjct 1320 AATAA 1324 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56792555295 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5