BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61600.1
Length=1266
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475167 jgi|Araly1|475167|fgenesh2_kg.2__297__AT1G61600.1 1616 0.0
> Ahg475167 jgi|Araly1|475167|fgenesh2_kg.2__297__AT1G61600.1
Length=1245
Score = 1616 bits (875), Expect = 0.0
Identities = 1152/1278 (90%), Gaps = 49/1278 (4%)
Strand=Plus/Plus
Query 1 ATGTACGTGACGAGAACATTGTCGCAGTTCAGAAAATATCAGAAGACGCTCTCGGAAGAG 60
||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGTACGTGACAAGGACATTGTCGCAGTTCAGAAAATATCAGAAGACGCTCTCGGAGGAG 60
Query 61 TCACCGGAAGGTCCGTTCTCCGGCGTTTTGGTTATCACAGATGAAGAAGCTGAAACAGAG 120
||||||||||||||||| ||||| ||| | ||||| |||||||||||||| |||||||||
Sbjct 61 TCACCGGAAGGTCCGTTTTCCGGTGTTCTAGTTATAACAGATGAAGAAGCCGAAACAGAG 120
Query 121 GATACGTTCTGTTTCGGGATGTGTACGAGGACAAAAATAGAGAAGCTTCCGTTACCTCAG 180
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 GACACGTTCTGTTTCGGGATGTGTACGAGGACAAAAATCGAGAAGCTTCCGTTACCTCAA 180
Query 181 GACAAGATCTTATCAGTTGTTCACTTAGACAGTTCTGGTAACAGAGAGACTTCGGTTAAG 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GACAAGATCTTATCCGTTGTTCACTTAGACAGTTCTGGTAACAGAGAGACTTCGGTTAAG 240
Query 241 AAGGTCTTGTTCATACCGGCTCTCGATCAACCTTTGTCTTCCAATCGGTATTACGTTGTT 300
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 241 AAGGTCTTGTTCATACCGGCTCTCGATCAACCATTGTCTTCAAATCGGTATTACGTTGTT 300
Query 301 CACGCTAGAGGCAGACACAAAGGGAAAGTTTCCGTGTGTTCTAGAGAGATAGAGAAAGGG 360
||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 301 CACGCTAGAGGCAGATACAAAGGAAAAGTTTCCGTGTGTTCTAGGGAGATAGAGAAAGGG 360
Query 361 GTATGTTGTTTTCCAGATATCTTGCATGACAAGAAACCTAAACCTCTGGATCCAAGAAAC 420
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 361 GTATGTTGTTTTCCGGATATCTTGCATGACAAGAAACCTAAACCTTTGGATCCAAGAAAC 420
Query 421 ATATATCAGACGGTTAAGATCAACCGGCATCACGACCGGACATTCTATGCAAAATCTGTG 480
|||||||||||| |||||||||||||||||||||||||||| |||| || ||||| |||
Sbjct 421 ATATATCAGACGCTTAAGATCAACCGGCATCACGACCGGACGTTCTTTGGGAAATCAGTG 480
Query 481 GCGCCAGACGGTACACCGCCAACATTTCTCAAGAAGAAAGGATGGGAGCTACGAACCTCG 540
|| ||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 481 GCACCAGATGGTACACCGCCTTCATTTCTCAAGAAGAAAGGATGGGAGCTGCGAACCTCG 540
Query 541 AGGAGCCTACATCCGAGGAGACCTAGAGAAGCTCTTGGCCTAGACGAGGAACTAAGAGCT 600
||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 541 AGGAGCCTACATCCGAGGAGACCTAGAGAAGCTCTAGGCCTAGACGATGAGCTAAGAGCC 600
Query 601 CGTCTCCCAGCATTTGGATTTCCAGTTTCTACAATTCGGTCAGGAAGTGTGATAGTTGGA 660
|||||||| ||||| ||||| ||||| ||||||||||||||||| || |||||||| |||
Sbjct 601 CGTCTCCCTGCATTCGGATTCCCAGTCTCTACAATTCGGTCAGGGAGCGTGATAGTAGGA 660
Query 661 GAATGGTATTGCCCTTTTATGTTTGTGAAGGAGAATTGTAGTGTAAGTCAACAAATGAGG 720
|||||||||||||| ||||||||||||||||||||||||||| ||||| | |||||||||
Sbjct 661 GAATGGTATTGCCCGTTTATGTTTGTGAAGGAGAATTGTAGTTTAAGTTACCAAATGAGG 720
Query 721 AAGTCAATGTTCTATAGGATCACACTATCCCAATACTGGGAAC-G----A--ATT-T--- 769
||||||||||||||||||||||||||||||||||||||||||| | | ||| |
Sbjct 721 AAGTCAATGTTCTATAGGATCACACTATCCCAATACTGGGAACGGATCTATCATTGTGAA 780
Query 770 ACCATTG-CGGAAACAATGATCTTGATGAAAACAATGATGAAAACGAAGAAGAAGTTG-T 827
| || || || ||||| ||||| || |||||||||||||| ||||||||||||| || |
Sbjct 781 AACAATGACGCCAACAACGATCTCGACGAAAACAATGATGACAACGAAGAAGAAG-TGCT 839
Query 828 GAGAGTAGAGGCTAACGTCGTGAGAGAGGCCAACTATGTGAAGGGTATGGAGGCGGTTAA 887
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 840 GAGAGTAGAGGCGAACGTCGTGAGAGAGGCCAACTATGTGAAGGGTATGGAGGCAGTTAA 899
Query 888 GGGAGAGAAAGAAGGGCATGGAGGGTTTTATTGGTATAGGCAGGTTCAAGGTCCACGGGG 947
||| |||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||
Sbjct 900 GGGGGAGAAAGAAGGGCATGGAGGATTTCATTGGTATAGGCAAGTTCAAGGTCCACGGGG 959
Query 948 ACCGGGGGAGAGGAGGAGGAAGACGGGTTTAAGGTCTCCGGTGGGGCTGAGTTTTGTGGT 1007
||||||||||||||||||||| | |||| |||| ||||||||||||||||||||||||||
Sbjct 960 ACCGGGGGAGAGGAGGAGGAAAAGGGGTGTAAGTTCTCCGGTGGGGCTGAGTTTTGTGGT 1019
Query 1008 GGTAgaaaggatgagaagggtaatggaggaaggagggtgggtgggaggaggaaggaaagt 1067
|||||||||||||||||| ||||||||||||||||||| || | | || || ||| ||
Sbjct 1020 GGTAGAAAGGATGAGAAGAGTAATGGAGGAAGGAGGGT-GG-GTG-GGTGG-AGG-AA-- 1072
Query 1068 ggtgagggtggagagagATGAACCAATCAGGGTTTGTAGAAGAGATGGTAGGAATATGAA 1127
| || ||||| ||||| || | || | || | | | || |||| ||
Sbjct 1073 -G-GAAGGTGGTGAGAG-TG----GA-GAGAG-ATG-A-ACCA-AT--TAGG---AT--- 1112
Query 1128 TGGTAACAATGATAGAAATTGGAGGAGATTTGGGTGTTATGTGTTGGTGGAGAGTTTTGG 1187
| | | | || ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 T--T--CTA-GA-AGAGATTGGAGGAGATTTGGGTGTTATGTGTTGGTGGAGAGTTTTGG 1166
Query 1188 GCTGAGAAGAGCAGATGGAGTTTTGTTGGTTAAATGTGTATTTAGACATACTAATAGA-T 1246
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1167 GCTGAGAAGAGCAGATGGAGTTTTGTTGGTTAAATGTGTATTTAGACATACTAATAGACT 1226
Query 1247 TGAGATGTAACTGGGAGT 1264
| ||||||||||||||||
Sbjct 1227 T-AGATGTAACTGGGAGT 1243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47310539997
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5