BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61610.1
Length=2529
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907291 jgi|Araly1|907291|Al_scaffold_0002_372 3670 0.0
> Ahg907291 jgi|Araly1|907291|Al_scaffold_0002_372
Length=2538
Score = 3670 bits (1987), Expect = 0.0
Identities = 2369/2551 (93%), Gaps = 35/2551 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGGATTTAACAGAAACCTTACTTTGGTGACGACTCTTTTGATATTCCATCAACTA 60
||||||| |||| |||||||||||||| |||||||||| |||||||| || | |||||||
Sbjct 1 ATGGCAGAATTTTACAGAAACCTTACTGTGGTGACGACCCTTTTGATTTTGCTTCAACTA 60
Query 61 TGTAGCAACGTATCTTGCTCCACAAGCAACTCATTCACTAGAAACCACACAATACGAGAG 120
|||| |||||||||||||||||||||||||||| |||| ||||||||||| ||||||||
Sbjct 61 TGTACCAACGTATCTTGCTCCACAAGCAACTCAATCACCAGAAACCACACGATACGAGAT 120
Query 121 GGAGACTCAC-TGATCAGCGAGGATGAAAGCTTCGAGCTTGGATTCTTCACCCCCAAAAA 179
|||||||||| || | |||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 121 GGAGACTCACTTG-TTAGCGAGGATGAAAGCTTCGAGCTTGGATTCTTCAGCCCCAAAGA 179
Query 180 TTCGACGTTAAGGTATGTTGGAATATGGTACAAGAACATAGAACCTCAAACAGTTGTTTG 239
||| || || |||||||| |||||||||||||||||||| ||||||| ||||||||| ||
Sbjct 180 TTCTACTTTCAGGTATGTCGGAATATGGTACAAGAACATCGAACCTCGAACAGTTGTCTG 239
Query 240 GGTTGCGAATAGAGAGAAGCCGTTGTTGGATCACAAGGGAGCTCTAAAGATTGCAGATGA 299
|||||||||| |||||||||| ||||||||||||||||||||| | ||||||||||||||
Sbjct 240 GGTTGCGAATCGAGAGAAGCCATTGTTGGATCACAAGGGAGCTTTGAAGATTGCAGATGA 299
Query 300 CGGAAATTTGGTGATCGTGAACGGTCAAAACGAAACCATTTGGTCCACAAATGTC-GAGC 358
|| ||||||||| ||||||| || |||||||| ||||||||||||||||||| | |||
Sbjct 300 TGGGAATTTGGTGGTCGTGAATGGGCAAAACGACACCATTTGGTCCACAAATG-CTAAGC 358
Query 359 CCGAGTCAAACAACACGGTTGCTGTTCTGTTCAAAACAGGGGATTTGGTTCTGTGTTCAG 418
|||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||
Sbjct 359 CCGAGTCAAACAACACTGTTGCTGTTCTGTTGAAAACAGGGGATTTGGTTCTGTCTTCAG 418
Query 419 ACTCAGACAGAAGAAAATGGTATTGGGAGAGTTTTAACAATCCAACCGACACTTTCTTGC 478
||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ACTCAGATAGAGGCAAATGGTATTGGGAGAGTTTTAACAATCCAACCGACACTTTCTTGC 478
Query 479 CCGGTATGAGGGTTCGGGTGAATCCTTCGCTTGGAGAAAATCGCGCATTTATCCCGTGGA 538
|||||||||||||||||||| ||||||||| |||||||||||| || |||| ||||||||
Sbjct 479 CCGGTATGAGGGTTCGGGTGTATCCTTCGCATGGAGAAAATCGGGCTTTTACCCCGTGGA 538
Query 539 AATCCGAGAGTGATCCTTCACCAGGAAAGTATTCAATGGGGATTGATCCTGTGGGAGCAC 598
||||||||| |||||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct 539 AATCCGAGAATGATCCTTCACCAGGAAAGTATTCAATGGGCATCGATCCTGTTGGAGCAC 598
Query 599 TAGAGATTGTGATTTGGGAAGGGGAAAAGAGAAAATGGCGTAGCGGACCGTGGAATTCGG 658
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 599 TAGAGATTGTGATTTGGGAAGGGGAAAAGAGGAAATGGCGTAGCGGACCGTGGAATTCAG 658
Query 659 CTATCTTTACCGGTATACCTGATATGCTCCGTTTCACAAATTATATTTACGGGTTTAAGC 718
|||||||||| |||||||| |||||| |||||||||| ||||||||||||||||||||||
Sbjct 659 CTATCTTTACGGGTATACCGGATATGTTCCGTTTCACGAATTATATTTACGGGTTTAAGC 718
Query 719 TCTCTTCTCCTCCTGATAGAGATGGTAGCGTGTACTTCACGTATGTTGCCTCAGATAGTT 778
||||| | | ||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 719 TCTCT-C-C-TCCGGATAGAGATGGTAGCGTGTACTTCACGTATGTTGCCACAGATAGTT 775
Query 779 CCGATTTCTTGAGGTTTTGGATTAGGCCTGATGGCGTAGAAGAGCAGTTCAGATGGAATA 838
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 776 CCGATTTCTTGAGGTTTTGGATTAGGTTTGATGGCGTAGAAGAGCAGTACAGATGGAATA 835
Query 839 AGGATATCAGGAACTGGA-ATTTGCTTCAATGGAAACCAAGCACGGAATGTGAGAAGTAT 897
||||| || |||||||| ||| ||||||||||||||| || |||||||||||||| |||
Sbjct 836 AGGATGCCAAGAACTGGACATT-GCTTCAATGGAAACCGAGTACGGAATGTGAGAAATAT 894
Query 898 AACCGTTGTGGTAATTACAGTGTATGTGATGATAGTAAGGAGTTTGATTCCGGTAAATGC 957
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 895 AACCGTTGTGGTAATTACAGTGTATGTGATGATAGCAAGGAGTTTGATTCCGGTAAATGC 954
Query 958 AGTTGCATTGATGGATTTGAGCCGGTTCATCAGGATCAATGGAACAACAGGGACTTCTCA 1017
|||||||||||||| |||||||| ||||||||||||||||||||||||| ||| ||||||
Sbjct 955 AGTTGCATTGATGGGTTTGAGCCTGTTCATCAGGATCAATGGAACAACAAGGATTTCTCA 1014
Query 1018 GGTGGCTGCCAA-AGAAGAGTTCCTTTGAACTGTAATCAGAGTCTGGTTGCAGGTCAAG- 1075
||||||||| || ||||||||||| |||||||||||||||||| ||||||| | |||||
Sbjct 1015 GGTGGCTGC-AAGAGAAGAGTTCCGTTGAACTGTAATCAGAGTGTGGTTGCTGATCAAGG 1073
Query 1076 AGGATGGGTTTACGGTACTTAAGGGAATAAAGGTGCCTGATTTTGGATCAGTTGTTTTAC 1135
|| ||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1074 AG-ATGGGTTTAAGGTACTTAAGGGAATTAAGGTGCCTGATTTTGGATCAGTTTTTTTAC 1132
Query 1136 ATAACAACTCAGAGACCTGTAAAGATGTATGCGCAAGGGACTGTTCTTGTAAGGCTTATG 1195
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1133 ATAACAACTCAGAGACCTGTAAAGATGTATGCGCAAGAAACTGTTCGTGTAAGGCTTATG 1192
Query 1196 CG-TTAGTAGTAGGGATCGGATGCATGATTTGGACCCGTGATTTGATCGATATGGAACAT 1254
|| || ||| ||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1193 CGGTT-GTATTAGGGATCGGATGCATGATTTGGACCCATGATTTGATCGATATGGAGCAT 1251
Query 1255 TTTGAACGCGGTGGAAACTCTATCAACATCCGGCTAGCGGGTTCTAAACTAGGTGGTGGG 1314
||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||
Sbjct 1252 TTTGAACGCGGTGGAAACTCTATAAACATCCGGCTAGCGGGTTCTGAACTAGGAGGTGGA 1311
Query 1315 AAGGAAAATTC-AACACTTTGGATAATTGTTTTCAGTGTTATAGGAGCATTCTTACTAGG 1373
|||||||| || || ||||| ||||||| ||||||||||||| || |||||||| || ||
Sbjct 1312 AAGGAAAAATCGAA-ACTTTTGATAATTATTTTCAGTGTTATTGGTGCATTCTTGCTTGG 1370
Query 1374 ATTATGCATTTGGATCTTATGGAAGTTTAAGAAAAGCCTTAAAGCTTTCTTGTGGAAGAA 1433
||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 1371 ATTATGCATTTGGATCTTATGGAAGTTCAAGAAAAGTCTCAAAGCTTTCTTGTGGAAGAA 1430
Query 1434 GAAAGATAT-CACAGTTTCTGATATCATAGAGAACAGAGATTACTC----AAG-C-TC-- 1484
||||||| | | ||||||||||||||| ||||||||| |||||||| ||| | ||
Sbjct 1431 GAAAGATCTTC-CAGTTTCTGATATCAGAGAGAACAGTGATTACTCGGTTAAGTCCTCAA 1489
Query 1485 GC-CG---ATCAAAGTTCTAGTAGGGGATCAAGTTGACACACCCGATTTACCAATATTCA 1540
|| || |||||| |||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1490 GCTCGCCGATCAAACTTCTAGTAGGGGATCAAGTTGACACACCCGATTTGCCAATTTTCA 1549
Query 1541 GTTTTGACAGCGTAGCCTCAGCTACTGGAGATTTCGCTGAAGAGAACAAGCTTGGACAGG 1600
|||| ||||||||||||||||| || ||||||||||||||||| ||||||||||||||||
Sbjct 1550 GTTTCGACAGCGTAGCCTCAGCAACAGGAGATTTCGCTGAAGAAAACAAGCTTGGACAGG 1609
Query 1601 GCGGATTCGGTACTGTATATAAGGGAAACTTTTCAGAAGGAAGAGAGATTGCAGTGAAGA 1660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 GCGGATTCGGTACTGTATATAAGGGAAACTTTTCAGAAGGAAGAGAGATTGCAGTGAAGA 1669
Query 1661 GACTATCAGGGAAATCTAAACAAGGACTAGAGGAGTTCAAGAACGAGATCTTACTAATCG 1720
||||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 1670 GACTATCCGGGAAATCTAAGCAAGGGCTAGAGGAATTCAAGAACGAGATCTTACTAATCG 1729
Query 1721 CGAAACTCCAGCATCGGAATCTTGTTAGATTACTAGGATGTTGCATTGAAGACAATGAGA 1780
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1730 CGAAACTCCAGCATCGAAATCTTGTTAGATTACTAGGATGTTGCATTGAAGACAACGAGA 1789
Query 1781 AGATGCTTCTCTATGAATATATGCCAAACAAGAGTTTGGACCGCTTTCTTTTTGATGAGA 1840
| || |||||||||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 1790 AAATACTTCTCTATGAATACATGCCAAACAAGAGTTTGGATCGCTTCCTTTTTGATGAGA 1849
Query 1841 GTAAACAAGGAAGTTTGGACTGGAGAAAACGATGGGAGGTCATTGGAGGAATCGCGAGGG 1900
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1850 GTAAACGAGGAAGTTTGGACTGGAGAAAACGATGGGAGATCATTGGAGGAATCGCGAGGG 1909
Query 1901 GATTACTTTACTTACATAGAGACTCAAGACTAAAGATCATTCACCGTGACCTAAAAGCTA 1960
|||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1910 GATTGCTTTACTTGCACAGAGACTCAAGACTAAAGATCATTCACCGTGACCTAAAAGCTA 1969
Query 1961 GCAATATCTTGCTAGACACGGAAATGAATCCAAAGATCTCGGATTTCGGTATGGCTAGGA 2020
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1970 GCAATATCTTGCTAGACACGGAAATGAATCCAAAGATTTCGGATTTCGGTATGGCTAGGA 2029
Query 2021 TATTCAACTACCGACAAGACCATGCCAACACAATCCGAGTCGTCGGCACATATGGTTATA 2080
| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 2030 TCTTCAACTACCGACAAGACCAGGCCAACACGATCCGAGTCGTCGGCACATATGGTTATA 2089
Query 2081 TGGCTCCGGAGTATGCAATGGAAGGGATATTCTCAGAGAAATCAGATGTGTATAGCTTTG 2140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2090 TGGCTCCGGAGTATGCAATGGAAGGGATATTCTCAGAGAAATCAGATGTGTATAGCTTTG 2149
Query 2141 GAGTGTTGATATTGGAGATTGTGAGTGGAAGAAAAAACGTTAGCTTTCGAGGGACTGATC 2200
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
Sbjct 2150 GAGTGTTGATATTGGAGATTGTGAGTGGAAGAAAAAACCTTAGCTTTCGAGGGTCTGAAC 2209
Query 2201 ATGGAAGTCTCATTGGTTATGCGTGGCATTTATGGAGCCAAGGAAAGACAAAAGAGATGA 2260
|||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2210 ATGGAAGTCTTATCGGTTATGCGTGGCATTTATGGAGCCAAGGAAAGACAAAAGAGCTGA 2269
Query 2261 TAGATCCAATTGTGAAGGACACTAGAGACGTGACGGAAGCGATGAGATGCATCCACGT-G 2319
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 2270 TAGATCCAACTGTGAAGGACACTAGAGACGTAACGGAAGCGATGAGATGCATCCACGTAG 2329
Query 2320 GGTATGTTGTGTACACAAGACTCGGTCATTCACAGACCAAACATGGGTTCGGTTTTGTTG 2379
|| || ||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 2330 GG-ATATTGTGTACACAAGACTCGGTCATTCACCGACCAAACATTGGTTCGGTTTTGTTG 2388
Query 2380 ATGTTGGAGAGTCA-AACCAGTCAACTTCCACCCCCGAGACAGCCGACCTTCCACTCGTT 2438
|||||||||||| | ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 2389 ATGTTGGAGAGT-AGAACCAGTCAACTTCCACGTCCGAGACAACCGACCTTCCACTCGTT 2447
Query 2439 CTTGAACTCTGGTGACATTGAACTCAACTTTGACGGTCACGATGTTGCCTCCGTTAACGA 2498
||||||||| ||||| |||||||||||||| |||||||| ||||||||||| || |||||
Sbjct 2448 CTTGAACTCCGGTGAGATTGAACTCAACTTGGACGGTCATGATGTTGCCTCGGTCAACGA 2507
Query 2499 TGTTACTTTCACAACAATTGTTGGTAGATGA 2529
|||||||||||||||||||||||||||||||
Sbjct 2508 TGTTACTTTCACAACAATTGTTGGTAGATGA 2538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95339883235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5