BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61620.1
Length=1264
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475165 jgi|Araly1|475165|fgenesh2_kg.2__295__AT1G61620.1 1762 0.0
> Ahg475165 jgi|Araly1|475165|fgenesh2_kg.2__295__AT1G61620.1
Length=1184
Score = 1762 bits (954), Expect = 0.0
Identities = 1062/1113 (95%), Gaps = 11/1113 (1%)
Strand=Plus/Plus
Query 87 CCCAATTCAATATTCGTCGCCAATATGCCGCAAAGACACTCGAAGAACAACAATGATCTT 146
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 45 CCCAATTCAATCTTCGTCGCCAATATGCCGCAGAGACACTCGAAGAACAACAATGATCTT 104
Query 147 GCGTATTTCACTTACGACGAGAAGAAGAAGTTAGGTTATGGAACTCAGAGAGAGAGATTG 206
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 105 GCCTATTTCACTTACGACGAGAAGAAGAAGTTAGGTTATGGAACTCAGAGAGAGAGATTG 164
Query 207 GGGAGAGACTCGATCAAACCCTTTGATGCTTGTTCTCTCTGCTTGAAGCCTTTCATTGAT 266
|||| ||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 165 GGGAAAGACTCGATTAAGCCCTTCGATGCTTGTTCTCTCTGCTTGAAGCCTTTCATTGAT 224
Query 267 CCGATGTGTTGCCATAAGGGTCATGTCTTTTGCAGAGAGTGTATACTTGAATGTTTCCTT 326
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 225 CCGATGTGTTGCCATAAAGGTCATGTCTTTTGCAGAGAGTGTATCCTCGAATGTTTCCTT 284
Query 327 GCTCAGAAGAAAGATATCCAAAGGAGGCTTGCTGCACATTCGTCTCAAAAGAAGCAAGAT 386
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 285 GCTCAGAAGAAAGATATCCAAAGGAGGCTTGCTGCACATACGTCTCAAAAGAAGCAAGAT 344
Query 387 AAGGATGAAGAAGAAGAGAGGCTAATGTTACAAAAGGCGAGAGAGCTCGACGAATTTGAT 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 AAGGATGAAGAAGAAGAGAGGCTAATGTTACAAAAGGCGAGAGAGCTCGACGAATTTGAT 404
Query 447 CAGCAAAACCATAGTGCAATGCCTCGAAACAGTGACAAGAATCACAACGAAGATAAGAAT 506
||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||
Sbjct 405 CAGCAAAACCATAGTGCAATGCCTCGAAACAGTGATAAGAACCACAACGATGACAAGAAT 464
Query 507 GGTTTTCATGGGGCAAACAGTGTGAAGACGACTTCCTTTGAAGAAGAAGCGCTTAGGACA 566
||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 465 GGTTTTCATGGTGCGAACAGTGTGAAGACGACTTCCTTTGAAGAAGAAGCGCTTAAGACG 524
Query 567 ATGAAAGCCTTCTGGCTCCCATCAGCTACACCAGCAGCTTCGGTCAGAGTAGATGCTCCA 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 ATGAAAGCCTTCTGGCTCCCATCAGCTACACCAGCAGCTTCGGTCAGAGTAGATGCTCCA 584
Query 627 GAAACTCACACAGTCTGTCCAGAGGGCAAAGAGAAGCTCAAGCTTAAGAACCTCTTTGCA 686
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 585 GAAACTCACACAGTCTGTCCAGAAGGCAAAGAGAAGCTCAAGCTTAAGAACCTCTTTGCA 644
Query 687 ATTCGTTTCACAGAAGACAACAGCGAAGAGGAAGAGACCAAGACAAAATCAGCATCTTCA 746
||||||||||| ||||||||||||||||| ||||||| |||| | |||||||||||||||
Sbjct 645 ATTCGTTTCACGGAAGACAACAGCGAAGAAGAAGAGAACAAGCCGAAATCAGCATCTTCA 704
Query 747 AGCTCTTATGATAAATCCTACATCTGCCCGAGCTGCAAAGTCACTCTCACCAACACAATG 806
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 AGCTCTTATGACAAATCCTACATCTGCCCGAGCTGCAAAGTCACTCTCACCAACACAATG 764
Query 807 TCCCTCGTGGCACTTAGCTCATGCGGACATGTTTTCTGCAAGAAGTGTGCTGAGAAGTTT 866
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 765 TCCCTCGTGGCACTTAGCTCATGCGGACATGTTTTCTGCAAGAAGTGTGCTGAAAAGTTT 824
Query 867 ATGCCCGTCGACAAAGTCTGTCTTGTGTGTGACAAACCTTGCAAGGATAGGAACTTGGTT 926
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 825 ATGCCCGTCGACAAAGTCTGTCTTGTGTGTGACAAGCCTTGCAAGGACAGGAACTTGGTT 884
Query 927 GGGTTAAAGAAAGGAGGCACGGGTTTCGCTGAGCACGACGATCATCTTGAGGCTAAGGAG 986
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 885 GGGTTAAAGAAAGGAGGCACAGGTTTCGCTGAGCACGACGATCATCTTGAGGCTAAGGAG 944
Query 987 TACAAGCATTTGGGTAGTGGATCTGGTTTGGGGCTTGTGAGGCCGGTTAAGACATGATGT 1046
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 945 TACAAGCATTTGGGTAGTGGCTCTGGTTTGGGGCTTGTGAGGCCGGTTAAGACATGATGT 1004
Query 1047 AACCACATCAAATGTTCTGTTCCAGTTACAGAAAA-TATCCTTGATTTTGTA-A--T-AC 1101
|||| || |||||||||| ||||| |||||||||| |||||||||||||||| | | ||
Sbjct 1005 AACCGCAACAAATGTTCTATTCCAATTACAGAAAAGTATCCTTGATTTTGTATACATTAC 1064
Query 1102 --T--T-ATGGCTTGTATCCTTTGCTACAACTAAGAGACGCTGCTTTCTCCATTTTGGCT 1156
| | ||||| |||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1065 ACTCCTTATGGCCTGTATCCTTTGCTACAACTAAGAGACACTGCTTTCTCTATTTTGGCT 1124
Query 1157 CTTGGTTT-GTCCTTTTGATCGGATCCTATTTG 1188
|||| ||| |||||||||||| |||||||||||
Sbjct 1125 CTTGATTTCGTCCTTTTGATCAGATCCTATTTG 1157
Score = 56.5 bits (30), Expect = 5e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1235 TTGATCAATTCAAATATTCTTCTTTTAGGC 1264
||||||||||||||||||||||||||||||
Sbjct 1155 TTGATCAATTCAAATATTCTTCTTTTAGGC 1184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47234294163
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5