BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61630.1
Length=1254
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475164 jgi|Araly1|475164|fgenesh2_kg.2__294__AT1G61630.1 1927 0.0
> Ahg475164 jgi|Araly1|475164|fgenesh2_kg.2__294__AT1G61630.1
Length=1253
Score = 1927 bits (1043), Expect = 0.0
Identities = 1186/1256 (94%), Gaps = 6/1256 (0%)
Strand=Plus/Plus
Query 1 ATGACTAATCCAGAGGATATCCCTAGCAGGATCGAGGGCAAGAATGTAGCAAGACTTGTG 60
|||| ||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||
Sbjct 1 ATGAGTAATCCAGAGGATATCCCTAGCAGGCTCGAGGGCAAGAATGCAGCACGACTTGTG 60
Query 61 TGTTGTTTCCTTGGAGTAGGGTCTCTCGTGGCATGGAATGCGATGCTGACCATCACTGAT 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 TGTTGTTTCCTTGGAGTAGGGTCTCTCGTGGCATGGAATGCAATGCTGACCATCACTGAT 120
Query 121 TACTATTATCAACTTTTCCCAAAATACCATCCATCGAGGGTGCTGACAATAGTTTACCAA 180
|||||||||||| ||||||| ||||| ||||| ||||||||||| |||||||||||||||
Sbjct 121 TACTATTATCAAATTTTCCCGAAATATCATCCTTCGAGGGTGCTAACAATAGTTTACCAA 180
Query 181 TTGGTTGCGAATGTGTTTATAATAACACTTGCTACTAAAGAAGCTAAGCTCAATACTCGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGGTTGCGAATGTGTTTATAATAACACTTGCTACTAAAGAAGCTAAGCTCAATACTCGA 240
Query 241 CTTCGTAACATTTTTGGGTATAGCCTTTATACCGCTGGTACCTTTTGTCTCATCATTTTG 300
|||||||||||||| ||||| ||| ||||||||| | |||||||||||||||||||||||
Sbjct 241 CTTCGTAACATTTTGGGGTACAGCATTTATACCGTTAGTACCTTTTGTCTCATCATTTTG 300
Query 301 GATCTTGCTTCACATGGCAGTGGAAGCGTAGTAGCATATGTGTTGTTATGTTTGATCGTT 360
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 301 GATCTTGCTTCGCATGGCAGTGGAAGCGTAGTAGCATATGTGGTGTTATGTTTGATAGTT 360
Query 361 GCTCTTTTCGGTCTCGCTGATGCTTTTGTACAAGGTGCAATGGTTGGAGATTTATCCTTC 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 361 GCTCTTTTCGGGCTCGCTGATGCTTTTGTACAAGGTGCAATGGTTGGAGATTTGTCTTTC 420
Query 421 ATGTCCCCCGACTTCATCCAGGCGTTCATGGCCGGTTTAGGCATAGCTGGAGCTCTAACC 480
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 421 ATGTGCCCCGACTTCATCCAGGCGTTCATGGCTGGTTTAGGCATAGCTGGAGCTCTAACA 480
Query 481 TC-GGTATTAAGGCTTATTACTAAAGCAATCTTCGACAATTCGCCTGATGGTCTTCGAAA 539
|| || ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 481 TCTGG-ATTAAGGCTTATTACGAAAGCAATCTTCGACAAATCGCCTGATGGTCTTCGAAA 539
Query 540 AGGCGCTTTGTTGTTCATAGGAATAGCGACATTGATCGAGTTAGCCTGTGTCTTTCTATA 599
||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||
Sbjct 540 AGGCGCTTTGTTGTTCATAGGAATAGCAACATTGATTGAGTTAGCCTGTGTCTTTTTATA 599
Query 600 TACACTAGTCTTTGCTAAGCTCCCTATCGTGAAGTACTACCGCGCAAAAGCTGGGAAAGA 659
|||| ||||||||||||| |||||||||||||| ||||||||| | ||||||| ||||||
Sbjct 600 TACATTAGTCTTTGCTAAACTCCCTATCGTGAAATACTACCGCACCAAAGCTGCGAAAGA 659
Query 660 AGGGGCCAAAACTGTTTCAGCGGATCTTGCCGCAGCTGGCCTCCAAGAGCAAGCTGAACA 719
||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 660 AGGAGCCAAAACCGTTTCTGCGGATCTGGCCGCAGCTGGCCTCCAAGAGCAAGCTGAACA 719
Query 720 GGTTCACCAAATGGATGAGTCCAAGATCCAAAAACTAACCAAGAAGCAGTTACTACGGGA 779
||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||| |
Sbjct 720 GGTTCACCAAATGGACGAGTCCAAAATCCAAAGACTAACCAAGAAGCAGTTACTACGGCA 779
Query 780 AAACATAGATCTTGGAATCAATCTTTCCTTGATTTACGTGGTGACGCTATCGATTTTCCC 839
|||||||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||
Sbjct 780 AAACATAGATCTTGGAATAAATCTATCCTTGATTTACGTGGTGACACTATCGATCTTCCC 839
Query 840 GGGGTTTCTTTACGAGAACACAGGAGAACATAGATTGGGCGATTGGTATGCACCGGTTCT 899
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 840 AGGATTTCTTTACGAGAACACAGGAGAACATCGATTGGGCGATTGGTATGCACCGGTTCT 899
Query 900 AGTAGCCATGTACAACGGGTGGGATGCGATATCGAGGTTCATTCCCTCGATCAAACCG-T 958
|||||||||||| ||||||||||||||||| || ||||||||||||||||||||| | |
Sbjct 900 AGTAGCCATGTATAACGGGTGGGATGCGATCTCAAGGTTCATTCCCTCGATCAAA-GGAT 958
Query 959 TAGCAATGGAGTCTAGGAAATGGATCACGGTCTGCGTTGTGGCACGTCTT-TTGCTCGTT 1017
||||| | ||||| ||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 959 TAGCACTAGAGTCGAGGAAATGGATCACGGTCTGCGTTGTGGCACGT-TTCTTGCTCGTC 1017
Query 1018 CCGGCCTTTTACTTTACTGCTAAATACGCAGATCAAGGATGGATGCTTTTCCTCACCTCT 1077
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CCGGCCTTTTACTTTACCGCTAAATACGCAGATCAAGGATGGATGCTTTTCCTCACCTCT 1077
Query 1078 TTCTTGGGATTGAGTAACGGTTATTTAACCGTTTGTATCTTCAGCACTGCACCAAAGGGC 1137
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TTCTTGGGATTGAGTAACGGTTATTTAACCGTTTGTATCTTCAGCACTGCACCAAAGGGT 1137
Query 1138 TACAATGGACCGGAAGCAAATGCATTAGGGAATTTGATGTGTGTGTTTCTATTGGGAGGG 1197
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1138 TACAATGGACCCGAAGCAAATGCGTTAGGGAATTTGATGTGTGTGTTTCTATTGGGAGGG 1197
Query 1198 ATCTTCGCTGGAGTTTGTTTGGGTTGGCTTTGGCTCATTGGCAACGATTCGTTTTA 1253
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1198 ATCTTCGCTGGAGTTTGTTTGGGTTGGCTCTGGCTCATTGGCAACGATTCTTTTTA 1253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46853064993
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5