BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61640.1
Length=2254
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475162 jgi|Araly1|475162|fgenesh2_kg.2__292__AT1G61640.1 3338 0.0
Ahg919955 jgi|Araly1|919955|scaffold_101236.1 1101 0.0
> Ahg475162 jgi|Araly1|475162|fgenesh2_kg.2__292__AT1G61640.1
Length=2227
Score = 3338 bits (1807), Expect = 0.0
Identities = 2091/2225 (94%), Gaps = 31/2225 (1%)
Strand=Plus/Plus
Query 43 AATCGCTAAATCGATGAAATTATGCTCCCAACGTTTAACGGTTTAAAGATCATTC-CAAA 101
||||||||||||||| |||| |||||||| |||||||||||||||||||||| || ||||
Sbjct 21 AATCGCTAAATCGATAAAATAATGCTCCCGACGTTTAACGGTTTAAAGATCA-TCTCAAA 79
Query 102 AACTCAACCTTTTGCGTGTCTCCTCTCGCCATGACCCTAATCTCAAGATTTTTGATCTCT 161
||| ||||||||||||||| | |||||||||||||||||||||||||||||||||| |||
Sbjct 80 AACCCAACCTTTTGCGTGTTTTCTCTCGCCATGACCCTAATCTCAAGATTTTTGATATCT 139
Query 162 AGAGTGATTAGTAGAACTCTGTTTTCGAATCAGAATAATAGAACAGCTATTAATGTTTCT 221
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 140 AGAGTGATTAGTAGAACTCTGTTTTCGAATCAGAATAATAGAACAGCTATTAGGGTTTCT 199
Query 222 GTAAAGTTGCCACAATTCAGAATTCAGAGTAATGGATATCACACATTGGGTCTTCTTCAT 281
|| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 GTTAGGTTGCCACAGTTCAGAATTCAGAGTAATGGATATCACACATTGGGTCTTCTTCAT 259
Query 282 AATGTTAAAGGAAGGTTTTTAGGTAGTAATCATCATCAGCTTGCGCGTAGGAGCTATTCG 341
|||||||||||||||||||| | |||||||||||| | | ||||| ||||||||||||
Sbjct 260 AATGTTAAAGGAAGGTTTTT--G-AGTAATCATCAT--G-TCGCGCGGAGGAGCTATTCG 313
Query 342 ATTGCAGT-TGCGAGTAATGTAGTTAAGCAACATGCTCAAGTCTCTTGGGGAAGGCTTGT 400
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 314 ATTGCA-TCTGCGAGTAATGTAGTTAAGCAACATGCTCAAGTCTCTTGGGGAAGGCTTCT 372
Query 401 ACAGAGAGTAACTCTGAGTCGTAGTTGGAACTTACCTCGGATAAGTCAGATTGCTCAAGC 460
||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 373 ACAGAGAGTAACTTTGAATCGTAGTTGGAACTTACCTCGTATAAGTCAGATTGCTCAAGC 432
Query 461 GTGTAGCTTGTCTTTAGCCCGTTCGCACTTCTTGTTACCTGGTTTATTGGCTCTTACCTA 520
|| ||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| |
Sbjct 433 GTTTAGCTTGTCTTTAGCCCGTTCGCACTTGTTGTTACCCGGTTTCTTGGCTCTTACTTG 492
Query 521 TAGACAAGTGGCGTATGCGCAAAGGGTGGTTCCAAATCCTGTGGTCTATTCTCCTTCACA 580
|||||||||||| |||||||||||||||| ||||| |||||| | ||||||||||||||
Sbjct 493 TAGACAAGTGGCATATGCGCAAAGGGTGGCTCCAAGTCCTGTCATTTATTCTCCTTCACA 552
Query 581 CATTTCTCCTTATAGGAGTTCGATAAACTTCCCTATCGTTCTCTCGTCTTTAGTGTTTTC 640
| ||||| |||||||| |||||||||||||||||||| || ||||||||||| |||||||
Sbjct 553 CGTTTCTTCTTATAGGCGTTCGATAAACTTCCCTATCATTATCTCGTCTTTATTGTTTTC 612
Query 641 TGCGGTCAAGGGTGTTGTTCTGATCGGGAGAGCTCTTTATTTAGCAATTTTGTTTTCTCC 700
||||||||| |||||||||||||| ||||||||||| ||||||||| |||||||||||||
Sbjct 613 TGCGGTCAAAGGTGTTGTTCTGATTGGGAGAGCTCTCTATTTAGCATTTTTGTTTTCTCC 672
Query 701 AAATGTTATTATGGCGTTGTTGGGATTTGCT-TGCGGGCCTCGTTACAGACAGCTGCAGT 759
||||||||| ||||| ||||||||||||| | |||||||||||||||||| |||||||||
Sbjct 673 AAATGTTATAATGGCTTTGTTGGGATTTG-TGTGCGGGCCTCGTTACAGAAAGCTGCAGT 731
Query 760 ATGAGGTCCTCCATCGAACTCTGGAGAA-AGCAGGTCCTGCTTTTATCAAATTTGGTCAA 818
|||||||||||||||||||| |||| || ||||||||||||||||||||||||||| |||
Sbjct 732 ATGAGGTCCTCCATCGAACTTTGGA-AAGAGCAGGTCCTGCTTTTATCAAATTTGGCCAA 790
Query 819 TGGATTGCTACGCGACCTGATCGGTTTAATAAGGATTTGTGTTTGCAGCTTTCAAAGCTT 878
|||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 791 TGGATTGCCACACGACCTGATCGCTTTAACAAGGATTTGTGTTTGCAGCTTTCAAAGCTT 850
Query 879 CACAGTAATGCTCCTGAGCACAGTTTTGCGTTCACCAAAAAGAGCATTGAAAATGCATTT 938
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 851 CACAGTAATGCTCCTGAGCACAGTTTTGCGTTCACCAAAAAGAGCATCGAAACTGCATTT 910
Query 939 GGTCGTAAACTCTCTGAGATATTTGAGGAATTTGATGAGGCGCCAGTGGCATCTGGGAGT 998
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 GGTCGTAAACTCTCTGAAATATTTGAGGAATTTGATGAGGCGCCAGTGGCATCTGGGAGT 970
Query 999 ATAGCTCAAGTACACCGAGCTTCCTTGAAGTTTCAGTATGCAGGACAAAAGGTGAAGTCC 1058
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 971 ATAGCTCAAGTACACCGAGCTTCCTTGAAGTTTCAGTATCCAGGACAAAAGGTGAAGTCT 1030
Query 1059 TCGGAAGTTGCTGTGAAAGTTAGACATCCTTGTGTTGAGGAAACGATGAAGCGAGATTTT 1118
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 TCGGAAGTTGCTGTTAAAGTTAGACATCCTTGTGTTGAGGAAACGATGAAGCGAGATTTT 1090
Query 1119 GTGATAATTAATTTCGTGGCGAGGCTAACCACTTTTATTCCGGGGTTAAATTGGCTTAGA 1178
|||||||||||||| ||||| | |||||| ||||||||||||||| | ||||||||||||
Sbjct 1091 GTGATAATTAATTTTGTGGCAAAGCTAACTACTTTTATTCCGGGGCTGAATTGGCTTAGA 1150
Query 1179 TTGGACGAGTGTGTGCAACAGTTTAGTGTCTACATGTTGTCCCAAGTTGATCTCTCAAGG 1238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 TTGGACGAGTGTGTGCAACAGTTTAGTGTCTACATGTTGTCCCAAGTTGATCTCTCAAGG 1210
Query 1239 GAAGCTTCTCATTTGAGTCGGTTTATATATAACTTCCGTGGATGGAAAGATGTCTCTTTT 1298
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1211 GAAGCTTCTCATTTGAGTCGGTTTATTTATAACTTCCGTGGATGGAAAGATGTCTCTTTT 1270
Query 1299 CCTAAGCCCATCTATCCTCTAATACATCCCGCTGTTTTAGTCGAGACGTATGAGCACGGA 1358
||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 1271 CCTAAGCCCATCTATCCGCTTATACATCCCGCTGTTTTGGTCGAGACGTATGAGCACGGA 1330
Query 1359 GAGAGTGTGGCTCGTTATGTTGATGGCTCCGAAGGACAAGAAAAACTTAAGGCTAAAGTA 1418
||||| |||||||||||||| |||||||| |||||||| |||| |||||||||||||||
Sbjct 1331 GAGAGCGTGGCTCGTTATGTCGATGGCTCAGAAGGACATGAAAGGCTTAAGGCTAAAGTA 1390
Query 1419 GCTCATATCGGAACTAATGCTCTCTTGAAAATGCTCCTGGTCGACAACTTCATTCATGCT 1478
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1391 GCTCATATCGGAACTCATGCTCTCTTGAAAATGCTCCTGGTCGACAACTTCATTCATGCT 1450
Query 1479 GATATGCATCCTGGGAATATTCTTGTCCGGCCAAACAATACTAGAAGAGGTCTATTCAGA 1538
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1451 GATATGCATCCTGGGAATATTCTTGTCCGGCCAAACAATACTCGAAGAGGTCTTTTCAGA 1510
Query 1539 TCGAGGAAGCCACACATCGTTTTCCTAGATGTGGGCATGACTGCAGAACTTTCAAAAACT 1598
|| |||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| |
Sbjct 1511 TCAAGGAAGCCACACATTGTTTTCCTAGATGTGGGCATGACTGCGGAACTCTCAAAAATT 1570
Query 1599 GACCGAGATAACCTACTCGGATTTTTCAAGGCCGTTGCACGTAGAGACGGCCGGACTGCT 1658
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1571 GACCGAGATAACCTACTCGGGTTTTTCAAGGCAGTTGCACGTAGAGACGGCCGGACTGCT 1630
Query 1659 GCTGAACGAACACTTAAATTATCTAAACAACAGAATTGTCCTGATCCACAGGCCTTTATC 1718
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1631 GCTGAACGAACACTTAAATTATCTAAACAACAGAATTGTCCTAATCCTCAGGCCTTTATC 1690
Query 1719 AAGGAAGTAGAAGAAGCATTTACATTCTGGGGAACAGAGGAAGGGGATCTAGTCCATCCA 1778
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1691 AAGGAAGTAGAAGATGCATTTACATTCTGGGGAACAGAGGAAGGAGATCTAGTCCATCCA 1750
Query 1779 GCGGATTGTATGCACGAACTATTCGAGAAAATGAGGAGTCATAGAGTTAATATCGACGGC 1838
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1751 GCGGATTGTATGCACGAACTATTCGAGAAAATGAGGCGTCATAGAGTTAATATCGACGGC 1810
Query 1839 AATGTGTCCACCGTCATGTTTACAACATTAGTTCTCGAGGGTTGGCAACGGAAACTGGAT 1898
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1811 AATGTATCCACCGTGATGTTTACAACATTAGTTCTCGAGGGTTGGCAACGGAAACTTGAT 1870
Query 1899 CCAGGATACGATGTGATGCGTACGCTACAAACAATGCTGCTGAAAACGGATTGGATGAAA 1958
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1871 CCGGGATACGATGTGATGCGTACGCTACAAACAATGCTGCTGAAAACGGATTGGATGAAA 1930
Query 1959 TCACTTTCTTACACGATCGATGGACTTATGGCTCCGTAGATTGAAAAGGTTCAATCTTTG 2018
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1931 TCACTTTCTTACACGATCGATGGACTGATGGCTCCGTAGATTGAAAAGGTTCAATCTTTT 1990
Query 2019 ATTCTTTTACCCATTT-AACACTT-GAGAGCCACATTTT-TGTTTTGTTGCCTTAGGATG 2075
|||||||||||||||| ||| || |||||||||||||| | ||||||||||||||||||
Sbjct 1991 ATTCTTTTACCCATTTTAACTTTTTGAGAGCCACATTTTGTTTTTTGTTGCCTTAGGATG 2050
Query 2076 TGAAGAAGAACCAAAACATATATTTTAGAGAAAAACAAAGGAAAAGTCCTTTACTGTTT- 2134
||||||| | ||||||||||||||||||||||||||| |||||||| ||| | |||
Sbjct 2051 TGAAGAA---CGAAAACATATATTTTAGAGAAAAACAAAAGAAAAGTCGTTTT-T-TTTG 2105
Query 2135 TGTCTTCTTCTTATCTTTTGCTTATTCTTTGATTATTCTTTTTGCTAGAAATTGGAATTC 2194
|||||||||||| ||||||||||||||||| ||| || || ||||| |||||||||||||
Sbjct 2106 TGTCTTCTTCTTTTCTTTTGCTTATTCTTTAATT-TT-TTATTGCTGGAAATTGGAATTC 2163
Query 2195 TTCATCATTCTAAAA-CAGAGAATTTGTATTTTG-G-G-TATATATCAG-TTTTGAATTT 2249
||||||||||||||| |||||||||||||||||| | | ||||||| || ||||||||||
Sbjct 2164 TTCATCATTCTAAAAACAGAGAATTTGTATTTTGTGCGGTATATAT-AGGTTTTGAATTT 2222
Query 2250 CCTCG 2254
|||||
Sbjct 2223 CCTCG 2227
> Ahg919955 jgi|Araly1|919955|scaffold_101236.1
Length=2151
Score = 1101 bits (596), Expect = 0.0
Identities = 1166/1436 (81%), Gaps = 59/1436 (4%)
Strand=Plus/Plus
Query 612 CCTATCGTTCTCTCGTCTTTAGTGTTTTCTGCGGT-CA-AGGGTGTTGTTCTGATCGGGA 669
|||||| |||| || || ||| ||||||| | | | | ||||| || || |||| ||||
Sbjct 511 CCTATCTTTCTGTCTTCGTTATTGTTTTC-G-GTTATAGAGGGTTTTATTTTGATTGGGA 568
Query 670 GAGCTCTTTATTTAGCAAT-TTTGTTTTCTCCAAATGTTATTATGGCG-TTGTTG-GGAT 726
| ||| ||||| |||| | ||||||| |||| | | || | |||| | | |||| |||
Sbjct 569 GGGCTTTTTATATAGC-TTGTTTGTTTACTCCTAGTATTCTGATGGGGCTGGTTGTGGA- 626
Query 727 TTGCTTGCGGGCCTCGTTACA-G-ACAGCT-GCAGTATGAGGTCCTCCATCGAACTCTGG 783
| | || |||||||||| | | | | | || | | || | |||||||||||||||
Sbjct 627 AT-CATGTGGGCCTCGTTTTAGGAAAATATGGC--T-TCAGATGGTCCATCGAACTCTGG 682
Query 784 AGAA-AGCAGGTCCTGCTTTTATCAAATTTGGTCAATGGATTGCTACGCGACCTGATCGG 842
| || ||||||||||||||||||||||| ||||||||| || || ||||| ||||
Sbjct 683 A-AAGAGCAGGTCCTGCTTTTATCAAATGGGGTCAATGGGCAGCCACACGACCAGATCTA 741
Query 843 TTTAATAAGGATTTGTGTTTGCAGCTTTCAAAGCTTCACAGTAATGCTCCTGAGCACAGT 902
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 742 TTCCCCAAGGATTTGTGTTTACAGCTCTCAAAGCTTCACAGTAATGCTCCTGAGCATAGC 801
Query 903 TTTGCGTTCACCAA-AAAGAGC-ATTGAAAATGCATTTGGTCGTAAACTCTCTGAGATAT 960
||||| | ||| || ||| | | ||||| || || |||||||||||||| ||||||||||
Sbjct 802 TTTGCCTACACTAAGAAA-A-CTATTGAGAAGGCGTTTGGTCGTAAACTTTCTGAGATAT 859
Query 961 TTGAGGAATTTGATGAGGCGCCAGTGGCATCTGGGAGTATAGCTCAAGTACACCGAGCTT 1020
||||||| ||||| |||| ||||||||||||||||||||| ||||||||||| ||||||
Sbjct 860 TTGAGGAGTTTGAAGAGGTGCCAGTGGCATCTGGGAGTATTGCTCAAGTACATAGAGCTT 919
Query 1021 CCTTGAAG-TTTCAGTATGCAGGACAAAAGGTG-AAGTCCTCGGAAGTTGCTGTGAAAGT 1078
| || ||| ||||||||| ||||||||||| | ||||| ||| |||||||| |||||
Sbjct 920 CTTT-AAGGTTTCAGTATCCAGGACAAAAG-TCCAAGTCTTCGTTGGTTGCTGTTAAAGT 977
Query 1079 TAGACATCCTTGTGTTGAG-GAAACGATGAAGCGAGATTTTGTGATAATTAATTTCGTGG 1137
||||||||| |||||| | ||| |||| | | |||||||||||||||||||||| ||||
Sbjct 978 TAGACATCCGGGTGTTG-GTGAATCGATTAGGAGAGATTTTGTGATAATTAATTTGGTGG 1036
Query 1138 CGAGGCTAACCACTTTTATTCCGGGGTT-AAATTGGCTT-AGATTGGACGAGTGTGTGCA 1195
| | | || | ||||| ||||| | || |||| || || |||||||||||| |||||||
Sbjct 1037 CAAAGATATCTACTTTAATTCCAGCTTTGAAAT-GG-TTGAGATTGGACGAGAGTGTGCA 1094
Query 1196 ACAGTTTAGTGTCTACATGTTGTCCCAAGTTGATCTCTCAAGGGAAGCTTCTCATTTGAG 1255
||||||| |||||| ||||||||| |||||||||||| | ||||||||||| ||||||||
Sbjct 1095 ACAGTTTGGTGTCTTCATGTTGTCTCAAGTTGATCTCGCGAGGGAAGCTTCACATTTGAG 1154
Query 1256 TCGGTTTATATATAACTTCCGTGGATGGAAAGATGTCTCTTTTCCTAAGCCCATCTATCC 1315
|||||| ||||||||||| ||| ||||||| ||||||||||| ||||| || | |||||
Sbjct 1155 TCGGTTCATATATAACTTTCGTAGATGGAAGGATGTCTCTTTCCCTAAACCTGTGTATCC 1214
Query 1316 TCTAATACATCCCGCTGTTTTAGTCGAGACGTATGAGCACGGAGAGAGTGTGGCTCGTTA 1375
|| ||||||| |||||||| || ||||| |||||||||||||| || ||||| |||||
Sbjct 1215 CCTTGTACATCCTGCTGTTTTGGTGGAGACATATGAGCACGGAGAAAGCGTGGCACGTTA 1274
Query 1376 TGTTGATGGC-TCCGAAGGACAAGAAAA-ACTTAAGGCTAAAGTAGCTCATATCGGAACT 1433
||||||||| | |||||||| ||| | ||||| ||| | | ||||||||||| ||
Sbjct 1275 TGTTGATGGAATG-GAAGGACATGAATGGA-TTAAGACTAGATTGGCTCATATCGGGACC 1332
Query 1434 AATGCTCTCTTGAAAATGCTCCTGGTCGACAACTTCATTCATGCTGATATGCATCCTGGG 1493
|||| |||||||| |||||| |||| || ||||| ||||| ||||| |||||||| |||
Sbjct 1333 CATGCCCTCTTGAAGATGCTCTTGGTTGATAACTTTATTCACGCTGACATGCATCC-GGG 1391
Query 1494 AA-TATTCTTGTCCGGCCAAACAATACTAGAAGAGGTCTATTCAGATCGAGGAAGCCACA 1552
|| ||| ||||||||| ||| | | | |||| || |||| | ||| |||||| ||
Sbjct 1392 AAATATCCTTGTCCGGAAAAAGGCTTCCGGTGGAGGCCTTTTCAAAACGAAGAAGCCTCA 1451
Query 1553 CATCGTTTTCCTAGATGTGGGCATGACTGCAGAACTTTCAAA-AACTGACCGAGATAACC 1611
||| |||||||| |||||||| |||||||| ||||| ||||| ||| |||||||| |||
Sbjct 1452 CATTGTTTTCCTTGATGTGGGAATGACTGCGGAACTCTCAAAGAAC-GACCGAGAGAACT 1510
Query 1612 TACTCGGATTTTT-CAAGGCCGTTGCACGTAGAGACGGCCGGACTGCTGCTGAACGAACA 1670
|||| | |||||| |||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct 1511 TACTTG-ATTTTTTCAAGGCGGTTGCGCGTAGAGATGGCCGGACTGCTGCTGAACGAACA 1569
Query 1671 CTTAAATTATCTAA-ACAA-CAGAATTGTCCTGATCCACAGGCCTTTATCAAGGAAGTAG 1728
||||||||||| || | || ||||||||||| ||||| |||| |||||| |||||||||
Sbjct 1570 CTTAAATTATC-AAGA-AAGCAGAATTGTCCCAATCCAGAGGCTTTTATCGAGGAAGTAG 1627
Query 1729 AAGAAGCATTTACATTCTGGGGAACAGAGGAAGGG-GATCTAGTCCATCCAGCGGATTGT 1787
| || ||||| | |||||||||||| || ||| ||| |||| |||||||| ||||||
Sbjct 1628 AGGAGGCATTCAAATTCTGGGGAACCCCTGA-GGGAGATTTAGTACATCCAGCAGATTGT 1686
Query 1788 ATGCACGAACTA-TTCGAGAAAATGAGGA-GTCATAGAGTTAATATCGACGGCAATGTGT 1845
||||||||| || || |||||| | || | |||||||||||||||| || || |||||||
Sbjct 1687 ATGCACGAATTACTT-GAGAAAGTAAG-ACGTCATAGAGTTAATATTGATGGGAATGTGT 1744
Query 1846 CCACCGTCATGTTTACAACATTAGTTCTCGAGGGTTGGCAACGGAAACTGGATCCAGGAT 1905
||| || ||| | ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1745 GCACTGTGATGGTGACAACATTAGTTCTCGAGGGTTGGCAACGGAAACTTGACCCAGGAT 1804
Query 1906 ACGATGTGATGCGTACGCTACAAACAATGCTGCTGAAAACGGATTGGA-TGAAATCACTT 1964
| |||||||||| ||| | ||||||||| || ||||||| || ||| | || || |||
Sbjct 1805 ATGATGTGATGCACACGTTGCAAACAATGGTGTTGAAAACCGACTGGGCT-AAGTCTCTT 1863
Query 1965 TCTTACACGATCGATGGACTTATGGCTCCGTAG-AT-TGAAAAGGT-TCAATCTTT 2017
||||||||| | ||||| || ||||| |||||| | ||||| ||| ||| |||||
Sbjct 1864 TCTTACACGGTGGATGGTCTGATGGCGCCGTAGGAGATGAAA-GGTCTCA-TCTTT 1917
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84865065860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5