BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61650.1
Length=598
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907286 jgi|Araly1|907286|Al_scaffold_0002_367 420 7e-117
> Ahg907286 jgi|Araly1|907286|Al_scaffold_0002_367
Length=2199
Score = 420 bits (227), Expect = 7e-117
Identities = 279/303 (92%), Gaps = 7/303 (2%)
Strand=Plus/Plus
Query 293 ATGTGCATCTTGTATGTGGGGGTCTTCCATGCCAGGGACTTAGTGGTTTTACACCGATTT 352
|||||||| |||| |||||||||| |||||||||||||||||| ||||||| ||||||||
Sbjct 1064 ATGTGCATATTGTGTGTGGGGGTCCTCCATGCCAGGGACTTAGCGGTTTTA-ACCGATTT 1122
Query 353 AGAAATAAAGATAAACCACTTCAAGATGaaaaaaaaCAATGAAGTGACGG-TTTCATGAA 411
|||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||| |
Sbjct 1123 AGAAATAAAGATAAACCACTTCAAGATG-AAAAAAACAATCAAGTGACGGTTTTCATGGA 1181
Query 412 TATCATAGACTATACTTGAAGCCCAAATACGTCTTGATGGAGAACGTTGTAAATCTTTTA 471
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1182 TATCATAGAC--TACTTGAAGCCCAAATACGTCTTGATGGAGAACGTTGTAAGTCTTTTA 1239
Query 472 GGTTTCATGGAAAG-ATTTGTTGGTCGTTATGTTGTAGCTCGTCTTGTAAACAAGAATTA 530
|||||| | |||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1240 GGTTTCGCG-AAAGGATTTGTTGGTCGTTATGCAGTAGCTCGTCTTGTAAACAAGAATTA 1298
Query 531 CCAAGCAAGATGAGGCATAATGGCTGCTGGTGCATACAATGTTCCTCAATGTAGGTACAT 590
||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| ||||
Sbjct 1299 CCAAGCAAGATTAGGCATAATGGCTGCTGGTGCATACGGTGTTCCTCAGTGTAGATACAG 1358
Query 591 GGT 593
|||
Sbjct 1359 GGT 1361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21901308086
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5