BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G61667.1

Length=714
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg907284 jgi|Araly1|907284|Al_scaffold_0002_365                     793    0.0  


> Ahg907284 jgi|Araly1|907284|Al_scaffold_0002_365
Length=471

 Score =  793 bits (429),  Expect = 0.0
 Identities = 457/471 (97%), Gaps = 0/471 (0%)
 Strand=Plus/Plus

Query  12   ATGTCTATGcttcttcttcttcttcttcttGTCCCATTCATTACTCCATCTTCGCAATCT  71
            |||||| |||||||||||||||| |||||||||| |||||||| ||||||||||||||||
Sbjct  1    ATGTCTCTGCTTCTTCTTCTTCTACTTCTTGTCCAATTCATTAGTCCATCTTCGCAATCT  60

Query  72   TCCATTCGAAACCTCCTCGAAGCTCGCGGTTTACCAGGTGGTTTGTTTCCAGACAACGTG  131
            || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  61   TCGATTCGAAACCTCCTCGAAGCTCGTGGTTTACCAGGTGGTTTGTTTCCAGACAACGTG  120

Query  132  GAGAGTTATAGTCTAGATGATAAGACAGGAGAGCTCGAAGTTCAGCTACAAAATCCTTGT  191
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  121  GAGAGTTATAGTCTAGATGATAAGACAGGAGAGCTCGAAGTTCAGCTACAGAATCCTTGT  180

Query  192  TTCGCTCGGTTCGAAAACAGAGTATATTTTGATCGTGTGATTAAAGCAAATTTAAGCTAT  251
            || |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct  181  TTTGCTCGGTTCGAAAACAGAGTATATTTTGATCGTGTGATTAGAGCAAATCTAAGCTAT  240

Query  252  GGTGGGCTTGTTGGACTTGAAGGTTTAACACAAGAAGAGCTTTTTCTTTGGTTACCTGTT  311
            |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct  241  GGTGGGCTTGTTGGACTTGAAGGTTTGACATAAGAAGAGCTTTTTCTTTGGTTACCTGTT  300

Query  312  AAAGGCATTGCAGTGAATGATCCTTCTTCTGGACTTGTTCTCTTCGATATCGGTGTTGCT  371
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  301  AAAGGCATTGCAGTGAATGATCCTTCTTCTGGACTTGTTCTTTTCGATATCGGTGTTGCT  360

Query  372  CATAAACAAATCTCTCGTTCTCTCTTTGAAGATCCTCCTGTTTGTTATCCTCCTGGATCT  431
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  CATAAACAAATCTCTCGTTCTCTCTTTGAAGATCCTCCTGTTTGTTATCCTCCTGGATCT  420

Query  432  ATAATGGAGAAGTTAGAAAAAAGCAAGATGGATATTCAGCTCAAGAGATGA  482
            ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  421  ATAATGGAGAAGTTAGAGAAAAGCAAGATGGATATTCAGCTCAAGAGATGA  471



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26266689813


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5