BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61670.1
Length=1813
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924855 jgi|Araly1|924855|scaffold_200416.1 2388 0.0
> Ahg924855 jgi|Araly1|924855|scaffold_200416.1
Length=1576
Score = 2388 bits (1293), Expect = 0.0
Identities = 1480/1569 (94%), Gaps = 18/1569 (1%)
Strand=Plus/Plus
Query 90 GATCGGATATTTCGATGAAGAATCGTTCTTTAGGGTTTTGGGCGATCGGGGTTTTGCTCA 149
||||||||||||||||| ||| || |||||||||||||||||||| |||||||| |||
Sbjct 7 GATCGGATATTTCGATGGAGAGCCGCTCTTTAGGGTTTTGGGCGATTGGGGTTTTACTCG 66
Query 150 TCGGAAGCTTGATCGGAGCTACGGAA-GGCTCGATTCATGAGTACAACAACGAAAAGTTC 208
|||||||||| ||||||||||| ||| |||||||||||| ||| |||||||||||||||
Sbjct 67 TCGGAAGCTTAATCGGAGCTAC-GAATGGCTCGATTCATTCGTATAACAACGAAAAGTTC 125
Query 209 ACTG-CAAAATTCAATGCTCGCTTCTTCCATGGTGGTAGCGAAGGTCTTTACGCTTCCAA 267
|||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 126 ACTGTC-AAATTCAATGCTCGCTTCTTCCATGGTGGCAGCGAAGGTCTTTACGCTTCCAA 184
Query 268 ATCTCAAGATCTAAACTCTTCTTCTTCTTCTGATAATTCTTTTAAAGGCAAGTCCTTTAT 327
|| |||||||||||| | |||||||||||||||||| ||||||||||||||||||||||
Sbjct 185 ATTTCAAGATCTAAA--C-TCTTCTTCTTCTGATAATCCTTTTAAAGGCAAGTCCTTTAT 241
Query 328 AAGGTTTGATGATGTAACATTTGTGAGGACAAAGGAATCTGCTAGTAAACAGAATGCAAT 387
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 242 CAGGTTTGATGATGTAACTTTTGTGAGGACAAAGGAATCAGCTAGTAAACAGAATGCAAT 301
Query 388 GCAGTCAACTTCAGGATTAGTGGAAGCAATTATACTTGAGGTAAAAGACCGTGATAGAAT 447
|||||||||| | ||||| |||||||| || ||||||||||||||||| |||||||||||
Sbjct 302 GCAGTCAACTGCTGGATTGGTGGAAGCTATAATACTTGAGGTAAAAGATCGTGATAGAAT 361
Query 448 CGGTGGTACTTTTCTCAAATCCGAAGTGATTTGTTGCACGCCGGAGCTAGCTGATACTGG 507
|||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 362 CGGTGGCACTTTTCTCAAATCCGAAGTGATTTGTTGTACGCCTGAGCTTGCTGATACTGG 421
Query 508 ATCTTGTAGTCTTGGGGAAGTTATCA-TTAAGAGAGAGTCTAATGATGTTGAGTGGCCAA 566
|||||||||||||||||||||||| | |||| ||||||||||||||| |||| |||||||
Sbjct 422 ATCTTGTAGTCTTGGGGAAGTTAT-AGTTAATAGAGAGTCTAATGATCTTGAATGGCCAA 480
Query 567 GACAGATCAAGACATTCTTTAAAGGGAATAAGACTGAAGTTAAC-ATGTCCCCTGAAACT 625
||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 481 GACAGATCAAGACTTTCTTTAAAGGGAATAAGACTGAAGTT-ACTATGTCCCCTGAAACT 539
Query 626 GTGGTTATCAATAAGACTGGGATGTATTATCTTTATTTCATGATATGTGACCCGGAATTG 685
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 540 GTGGTTATTAATAAGACTGGGATGTATTATCTTTATTTCATGATATGTGATCCGGAGTTG 599
Query 686 GATGGTACTAGGATCAAG-GGGAGAACAGTTTGGAAGAACCCTGATGGTTATTTACCTGG 744
||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GATGGTACTAGAATC-AGAGGGAGAACAGTTTGGAAGAACCCTGATGGTTATTTACCTGG 658
Query 745 AAAGGTTGCTCCTTTAATGAACGTTTTTGGCTTTATGTCGTTAGCGTATATTTTGCTTGG 804
||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||
Sbjct 659 AAAGGTTGCTCCTTTAATGAAAGTTTTTGGGTTTATGTCGTTAGCGTATGTTTTGCTTGG 718
Query 805 TCTAGTTTGGTTTGTGAGGTTTGTTCAGTTTTGGAAGGATATAATTCAGTTGCATTATCA 864
||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||
Sbjct 719 CCTAGTTTGGTTTGTGCGGTTTGTTCAGTTTTGGAAGGATATAATTCAGCTGCACTATCA 778
Query 865 TATCACTTTGGTTATTGCTCTTGGTATGTGTGAAATGGCTGTTCGATACTTTGAGTATGT 924
||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 779 TATTACTTTGGTTATTGCTCTTGGCATGTGTGAAATGGCTGTTCGATACTTTGAATATGT 838
Query 925 TAATTTTAACTCCACTGGGATGAGGCCAATGGATGTTACCCTATGGGCGGTGACCTTTTC 984
|||||| ||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 839 TAATTTCAACTCGACTGGGATGAGACCAATGGACGTTACTCTATGGGCGGTGACCTTTTC 898
Query 985 TTCTA-TAAAGAAGACGCTTTCTAGGCTTCTTCTTCTGGTAGTCTCTATGGGTTATGGTG 1043
|||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 899 GTCTATTAAA-AAGACGCTTTCTAGGCTTCTTCTTCTGGTTGTCTCTATGGGTTATGGGG 957
Query 1044 TTGTAAAGCCTACCCTTGGTGGTATAACCTCGAGGATACTTCTACTTGGAGTCATATATT 1103
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 958 TTGTAAAGCCTACCCTTGGTGGTATAACCTCGAGGGTACTTCTTCTTGGAGTCATATATT 1017
Query 1104 TTGTTGCAACAGAGGCTCTTGAGTTGGTTGAGCATTTGGGAAACATCAATGACTTTTCGG 1163
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TTGTTGCAACGGAGGCTCTTGAGTTGGTTGAGCATTTGGGAAACATCAATGACTTTTCGG 1077
Query 1164 GAAAGACGATGATAGTTTTGGTTATTCCCGTGGCATTACTGGATGCTTGCTTTATTCTGT 1223
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1078 GAAAGACAATGATAGTTTTGGTGATTCCCGTGGCATTACTGGATGCTTGCTTTATTCTGT 1137
Query 1224 GGATTTTCTCATCATTGGCAAGAACACTTGAGAAACTTCAGATTAAGAGAAACATGGCCA 1283
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1138 GGATTTTCTCATCATTGGCAAGAACCCTTGAGAAACTTCAGATTAAGAGAAACATGGCTA 1197
Query 1284 AGCTTGAGCTTTATAGGAACTTCACCAATGCACTCGCTATCTCTGTTCTGCTCTCTATCG 1343
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1198 AGCTTGAGCTTTATAGGAACTTCACCAATGCACTCGCTATCTCTGTTCTGCTCTCTATTG 1257
Query 1344 CTTGGATTGGTTTTGAGCTATACTTCAACGGAACTGACCCTCTAATCGAACTCTGGCGAA 1403
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CTTGGATTGGTTTCGAGCTTTACTTCAACGGAACTGACCCTCTAATCGAACTCTGGCGAA 1317
Query 1404 TGGCGTGGATCATTCCAGCTTTTTGGAATTTACTCTCTTATGGTCTGTTAGCAGTCATAT 1463
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1318 TGGCGTGGATCATTCCAGCTTTTTGGAATATACTCTCTTATGGTCTGTTAGCAGTCATAT 1377
Query 1464 GCATCCTTTGGGCTCCATCAAATAATCCTACAAGGTACTCATACTTAGCGGAAACAGGGG 1523
||||||||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 1378 GCATCCTTTGGGCACCATCCAATAATCCCACAAGGTACTCATACTTAGCAGAAACAGGGG 1437
Query 1524 ATGAGTTTGAAGAGGAAGGTATCTCATTGACAGGTAGTGGAATTAAGAGTACAGAAGATG 1583
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1438 ACGAGTTTGAAGAGGAAGGTATCTCATTGACA---AGTGGAATTAAGAGTACAGAAGATG 1494
Query 1584 TTGAAAGGAATGAACTTCTATTTGGGCTTCCAGACGACGTTGAAGAGGGCAAACGTGAGT 1643
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1495 TTGAAAGGAATGAACTTCTATTTGGGCTTCCAGACGACGTTGAAGAGGGAAAACGCGAGT 1554
Query 1644 AAGCTCCAG 1652
|||||||||
Sbjct 1555 AAGCTCCAG 1563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68067267815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5