BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G61680.1 Length=1710 Score E Sequences producing significant alignments: (Bits) Value Ahg924854 jgi|Araly1|924854|scaffold_200415.1 992 0.0 > Ahg924854 jgi|Araly1|924854|scaffold_200415.1 Length=1769 Score = 992 bits (537), Expect = 0.0 Identities = 868/1027 (85%), Gaps = 25/1027 (2%) Strand=Plus/Plus Query 1 ATGGCCTTAATAGCTACCAAAATAAGTTCACGTT-CTTGTTTTGTTTCTGCTTATCCAAA 59 |||||||| |||||| ||| ||||| ||||| || |||||| |||||| || |||| Sbjct 22 ATGGCCTTGATAGCTCCCACAATAACTTCAC-TTCCTTGTTCTGTTTCAAAACATTCAAA 80 Query 60 CAATTCTCCAACGTTTCTGATATCCAAATTTCCCAATACGGTCGATTCTTTGTCGCCTGC 119 |||| |||||||||||||||| || ||||||| |||| |||||| ||||| ||| |||| Sbjct 81 CAATCCTCCAACGTTTCTGATCTCGAAATTTCACAATGCGGTCGCTTCTTCATCGTCTGC 140 Query 120 AAATACTGCTAAAAG-ATCGATCTTGAGAAACGTCCA-TGCTTCAGTTTCTAACCCTTCG 177 ||| |||||||| || || | ||| || ||| | | || | ||||||| | || | Sbjct 141 AAAAACTGCTAACAGAAT-GCTCTCAAGCTGTGTCTACT-CTCCGGTTTCTAGCATTTTG 198 Query 178 AAGCAGTTTCATAATAAGACATCCTTAGAATATTTACACGAGTTGAATATCAAGAAGATC 237 ||| ||||| || | ||||||||| ||||||||| |||| | ||||||||||||||| || Sbjct 199 AAGAAGTTTGATCACAAGACATCCATAGAATATTCACACAAATTGAATATCAAGAAGGTC 258 Query 238 AAGAATATACTAAG-TGCAAA-CGTAGATGTTCCATCCGAGAACCTGGAGATGATCGATG 295 ||||| || || || | |||| || ||||| ||||| |||||| ||||||||||| ||| Sbjct 259 AAGAACATTCT-AGTTTCAAACCG-AGATGATCCATTTGAGAACTTGGAGATGATCAATG 316 Query 296 TCATTCAAAGTTTAGGCATTGATCTCCATTTTCGACAAGAGATCGAGCAAACCCTTCACA 355 ||||||| ||||||||||||||||| |||| ||||| |||||||| ||||| ||||||| Sbjct 317 CCATTCAAGGTTTAGGCATTGATCTCTATTTCCGACACGAGATCGATCAAACTCTTCACA 376 Query 356 TGATTTACAAAGAAGGCC-TCCAATTC-A---ACGGTGATCTCCATGAGATAGCGCTTCG 410 |||| ||||||||| || ||| ||| | || ||||||| | |||| | |||||| | Sbjct 377 TGATATACAAAGAA-CCCACCCATTTCTATGGAC-GTGATCTTCGTGAGGTCGCGCTTTG 434 Query 411 CTTTCGATTGCTGAGACAAGAGGGTCACTATGTTCAAGAAATTATTTTCAAAAACATCCT 470 ||||||||||||||||||||| ||| ||||||||||||||| |||||| |||||||||| Sbjct 435 CTTTCGATTGCTGAGACAAGAAGGTTACTATGTTCAAGAAAGTATTTTTGAAAACATCCT 494 Query 471 AGACAAGAAGGGTGGATTTAAAGACGTA-GTAAAAAATGACGTCAAGGGTCTAACAGAAT 529 |||||||| |||||||| |||||| | |||||||||||| |||| ||||| ||||| Sbjct 495 TGACAAGAAAGGTGGATTGGAAGACG-ACCCAAAAAATGACGTGAAGGTTCTAATAGAAT 553 Query 530 TGTTTGAAGCTTCTGAGCTCCGTGTAGAAGGTGAAGAAACACTCGACGGTGCGAGAGAAT 589 ||| ||||||||||||||||||||||||||||||||||||||| || || | |||||| | Sbjct 554 TGTATGAAGCTTCTGAGCTCCGTGTAGAAGGTGAAGAAACACTTGATGGAGTGAGAGACT 613 Query 590 TCACATATAGCCGCCTTAATGAACTTTGCTCAGGTAGAGAAAGTCATCAAAAGCAAGAGA 649 | |||| || | ||||||||||||||||||||||| || ||||||||||| ||| ||||| Sbjct 614 TTACATTTAACTGCCTTAATGAACTTTGCTCAGGTCGAAAAAGTCATCAAGAGCGAGAGA 673 Query 650 TAATGAAG-TCTTTGGCGCAACCTCGCCACAAAACCGTAAGAGGATTAACGTCCAA-GAG 707 ||||| || ||||||||||||||||||||||||||| ||||| ||||||||| ||| || Sbjct 674 TAATG-AGTTCTTTGGCGCAACCTCGCCACAAAACCTTAAGAAGATTAACGT-CAATAAG 731 Query 708 GTTCACAAGCATGATCAAAATCGCGGGTCAAGAAGATCCAGAATGGTTACAGTCTCTATT 767 ||||| |||||||||||||| || |||||||||||| ||| |||||||| ||||| || Sbjct 732 GTTCATGAGCATGATCAAAATTGCTGGTCAAGAAGATAAAGAGTGGTTACAATCTCTTTT 791 Query 768 ACGAGTGGCGGAGATCGATTCCATTAGGCTAAAGTCATTGACTCAAGGAGAAATGTCTCA 827 || |||||| ||||| |||||||||||| | ||||| ||| ||||| |||||||||||| Sbjct 792 ACTAGTGGCTGAGATTGATTCCATTAGGTTGAAGTCCCTGATTCAAGAAGAAATGTCTCA 851 Query 828 AACATTTAAATGGTGGACAGAACTTGGTTTAGAAAAAGATG-TGGAGAAGGCAAGAAGCC 886 || ||| |||||||||| ||| ||| |||||||||||| | ||||||||||||||| || Sbjct 852 AATATTCAAATGGTGGAGAGAGCTTAATTTAGAAAAAGA-GCTGGAGAAGGCAAGAAACC 910 Query 887 AGCCGTTAAAATGGCATACGTGGTCCATGAAAATTCTTCAAGATCCGACCTTAACCGAAC 946 |||| |||||||| | || ||||||||| |||||||||||||||| ||||||||||||| Sbjct 911 AGCCACTAAAATGGTACACATGGTCCATGGAAATTCTTCAAGATCCAACCTTAACCGAAC 970 Query 947 AAAGGCTTGATCTTACCAAACCAATATCGCTTGTTTATGTTATAGATGACATTTTCGATG 1006 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 971 AAAGGCTTGATCTTACCAAACCAATATCGCTTGTTTACGTTATAGATGACATTTTCGATG 1030 Query 1007 TCTATGG 1013 | ||||| Sbjct 1031 TTTATGG 1037 Score = 826 bits (447), Expect = 0.0 Identities = 498/522 (95%), Gaps = 6/522 (1%) Strand=Plus/Plus Query 1195 TGGGCAAGTTTGTGTAAAGCATTCTTGGTAGAAGCAAAGTGGTTTAATTCGGGTTACTTA 1254 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 1228 TGGGCAAGTTTGTGTAAAGCATTCTTGATAGAAGCAAAGTGGTTTCATTCGGGTTACTTA 1287 Query 1255 CCCACCACTGAAGAGTATATGAAGAATGGGGTTGTGAGTTCAGGTGTTCATTTAGTGATG 1314 || | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1288 CCGAATACTGAAGAGTATATGAAGAATGGGGTTGTGAGTTCAGGTGTTCATTTAGTGATG 1347 Query 1315 CTTCATGCCTATATCTTGTTAGGCGAAGAACTAACAAAAGAGAAAGTCGAACTAATAGAG 1374 || |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1348 CTCCATGCCTACATCTTGTTAGGCGAAGAACTAACAAAAGAGAAAGTCGAACTAATTGAG 1407 Query 1375 AGTAACCCGGGGATTGTATCATCTGCAGCTACAATTCTCAGGCTCTGGGATGATCTCGGA 1434 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1408 AGCAACCCAGGGATTGTATCATCTGCAGCTACAATTCTCAGGCTCTGGGATGATCTCGGA 1467 Query 1435 AGTGCCAAGGATGAGAACCAAGATGGAACTGATGGATCATATGTAGAGTGTTACCTGAAC 1494 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1468 AGTGCCAAGGATGAGAACCAAGATGGAACTGATGGATCATACGTAGAGTGTTACCTGAAC 1527 Query 1495 GAGTACAAGGGATCAACTGTTGATGAAGCAAGAACACATGTTGCCCAGAAGATATCTAGA 1554 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 1528 GAGTACAAGGGATCAACTGTTGATGAAGCAAGAACACATGTTGTCCAGAAGATATCTAAA 1587 Query 1555 GCATGGAAACGCTTGAACAGGGAGTGTCTGAATCCATGTCCATTCTCAAGATCATTCTCA 1614 | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1588 GAATGGAAACGCTTGAACAGGGAGTGTCTGAATCCAAGTCCATTCTCAAGATCATTCTCC 1647 Query 1615 AAAGCTTGTCTCAACATTGCAAGAACAGTTCCTTTAATGTACAGCTATGATGATGATCAA 1674 ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 1648 AAAGCTTGTCTCAACATTGCAAGAACAGTTCCTCTAATGTACAGCTACGATGATGATCAA 1707 Query 1675 CGACTTCCCG------ACGAATATCTCAAGTCTCTAATGTAA 1710 |||||||||| |||||||||||||||||||||||||| Sbjct 1708 CGACTTCCCGGTCTCGACGAATATCTCAAGTCTCTAATGTAA 1749 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64143972580 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5