BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61680.1
Length=1710
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924854 jgi|Araly1|924854|scaffold_200415.1 992 0.0
> Ahg924854 jgi|Araly1|924854|scaffold_200415.1
Length=1769
Score = 992 bits (537), Expect = 0.0
Identities = 868/1027 (85%), Gaps = 25/1027 (2%)
Strand=Plus/Plus
Query 1 ATGGCCTTAATAGCTACCAAAATAAGTTCACGTT-CTTGTTTTGTTTCTGCTTATCCAAA 59
|||||||| |||||| ||| ||||| ||||| || |||||| |||||| || ||||
Sbjct 22 ATGGCCTTGATAGCTCCCACAATAACTTCAC-TTCCTTGTTCTGTTTCAAAACATTCAAA 80
Query 60 CAATTCTCCAACGTTTCTGATATCCAAATTTCCCAATACGGTCGATTCTTTGTCGCCTGC 119
|||| |||||||||||||||| || ||||||| |||| |||||| ||||| ||| ||||
Sbjct 81 CAATCCTCCAACGTTTCTGATCTCGAAATTTCACAATGCGGTCGCTTCTTCATCGTCTGC 140
Query 120 AAATACTGCTAAAAG-ATCGATCTTGAGAAACGTCCA-TGCTTCAGTTTCTAACCCTTCG 177
||| |||||||| || || | ||| || ||| | | || | ||||||| | || |
Sbjct 141 AAAAACTGCTAACAGAAT-GCTCTCAAGCTGTGTCTACT-CTCCGGTTTCTAGCATTTTG 198
Query 178 AAGCAGTTTCATAATAAGACATCCTTAGAATATTTACACGAGTTGAATATCAAGAAGATC 237
||| ||||| || | ||||||||| ||||||||| |||| | ||||||||||||||| ||
Sbjct 199 AAGAAGTTTGATCACAAGACATCCATAGAATATTCACACAAATTGAATATCAAGAAGGTC 258
Query 238 AAGAATATACTAAG-TGCAAA-CGTAGATGTTCCATCCGAGAACCTGGAGATGATCGATG 295
||||| || || || | |||| || ||||| ||||| |||||| ||||||||||| |||
Sbjct 259 AAGAACATTCT-AGTTTCAAACCG-AGATGATCCATTTGAGAACTTGGAGATGATCAATG 316
Query 296 TCATTCAAAGTTTAGGCATTGATCTCCATTTTCGACAAGAGATCGAGCAAACCCTTCACA 355
||||||| ||||||||||||||||| |||| ||||| |||||||| ||||| |||||||
Sbjct 317 CCATTCAAGGTTTAGGCATTGATCTCTATTTCCGACACGAGATCGATCAAACTCTTCACA 376
Query 356 TGATTTACAAAGAAGGCC-TCCAATTC-A---ACGGTGATCTCCATGAGATAGCGCTTCG 410
|||| ||||||||| || ||| ||| | || ||||||| | |||| | |||||| |
Sbjct 377 TGATATACAAAGAA-CCCACCCATTTCTATGGAC-GTGATCTTCGTGAGGTCGCGCTTTG 434
Query 411 CTTTCGATTGCTGAGACAAGAGGGTCACTATGTTCAAGAAATTATTTTCAAAAACATCCT 470
||||||||||||||||||||| ||| ||||||||||||||| |||||| ||||||||||
Sbjct 435 CTTTCGATTGCTGAGACAAGAAGGTTACTATGTTCAAGAAAGTATTTTTGAAAACATCCT 494
Query 471 AGACAAGAAGGGTGGATTTAAAGACGTA-GTAAAAAATGACGTCAAGGGTCTAACAGAAT 529
|||||||| |||||||| |||||| | |||||||||||| |||| ||||| |||||
Sbjct 495 TGACAAGAAAGGTGGATTGGAAGACG-ACCCAAAAAATGACGTGAAGGTTCTAATAGAAT 553
Query 530 TGTTTGAAGCTTCTGAGCTCCGTGTAGAAGGTGAAGAAACACTCGACGGTGCGAGAGAAT 589
||| ||||||||||||||||||||||||||||||||||||||| || || | |||||| |
Sbjct 554 TGTATGAAGCTTCTGAGCTCCGTGTAGAAGGTGAAGAAACACTTGATGGAGTGAGAGACT 613
Query 590 TCACATATAGCCGCCTTAATGAACTTTGCTCAGGTAGAGAAAGTCATCAAAAGCAAGAGA 649
| |||| || | ||||||||||||||||||||||| || ||||||||||| ||| |||||
Sbjct 614 TTACATTTAACTGCCTTAATGAACTTTGCTCAGGTCGAAAAAGTCATCAAGAGCGAGAGA 673
Query 650 TAATGAAG-TCTTTGGCGCAACCTCGCCACAAAACCGTAAGAGGATTAACGTCCAA-GAG 707
||||| || ||||||||||||||||||||||||||| ||||| ||||||||| ||| ||
Sbjct 674 TAATG-AGTTCTTTGGCGCAACCTCGCCACAAAACCTTAAGAAGATTAACGT-CAATAAG 731
Query 708 GTTCACAAGCATGATCAAAATCGCGGGTCAAGAAGATCCAGAATGGTTACAGTCTCTATT 767
||||| |||||||||||||| || |||||||||||| ||| |||||||| ||||| ||
Sbjct 732 GTTCATGAGCATGATCAAAATTGCTGGTCAAGAAGATAAAGAGTGGTTACAATCTCTTTT 791
Query 768 ACGAGTGGCGGAGATCGATTCCATTAGGCTAAAGTCATTGACTCAAGGAGAAATGTCTCA 827
|| |||||| ||||| |||||||||||| | ||||| ||| ||||| ||||||||||||
Sbjct 792 ACTAGTGGCTGAGATTGATTCCATTAGGTTGAAGTCCCTGATTCAAGAAGAAATGTCTCA 851
Query 828 AACATTTAAATGGTGGACAGAACTTGGTTTAGAAAAAGATG-TGGAGAAGGCAAGAAGCC 886
|| ||| |||||||||| ||| ||| |||||||||||| | ||||||||||||||| ||
Sbjct 852 AATATTCAAATGGTGGAGAGAGCTTAATTTAGAAAAAGA-GCTGGAGAAGGCAAGAAACC 910
Query 887 AGCCGTTAAAATGGCATACGTGGTCCATGAAAATTCTTCAAGATCCGACCTTAACCGAAC 946
|||| |||||||| | || ||||||||| |||||||||||||||| |||||||||||||
Sbjct 911 AGCCACTAAAATGGTACACATGGTCCATGGAAATTCTTCAAGATCCAACCTTAACCGAAC 970
Query 947 AAAGGCTTGATCTTACCAAACCAATATCGCTTGTTTATGTTATAGATGACATTTTCGATG 1006
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 971 AAAGGCTTGATCTTACCAAACCAATATCGCTTGTTTACGTTATAGATGACATTTTCGATG 1030
Query 1007 TCTATGG 1013
| |||||
Sbjct 1031 TTTATGG 1037
Score = 826 bits (447), Expect = 0.0
Identities = 498/522 (95%), Gaps = 6/522 (1%)
Strand=Plus/Plus
Query 1195 TGGGCAAGTTTGTGTAAAGCATTCTTGGTAGAAGCAAAGTGGTTTAATTCGGGTTACTTA 1254
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1228 TGGGCAAGTTTGTGTAAAGCATTCTTGATAGAAGCAAAGTGGTTTCATTCGGGTTACTTA 1287
Query 1255 CCCACCACTGAAGAGTATATGAAGAATGGGGTTGTGAGTTCAGGTGTTCATTTAGTGATG 1314
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 CCGAATACTGAAGAGTATATGAAGAATGGGGTTGTGAGTTCAGGTGTTCATTTAGTGATG 1347
Query 1315 CTTCATGCCTATATCTTGTTAGGCGAAGAACTAACAAAAGAGAAAGTCGAACTAATAGAG 1374
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1348 CTCCATGCCTACATCTTGTTAGGCGAAGAACTAACAAAAGAGAAAGTCGAACTAATTGAG 1407
Query 1375 AGTAACCCGGGGATTGTATCATCTGCAGCTACAATTCTCAGGCTCTGGGATGATCTCGGA 1434
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1408 AGCAACCCAGGGATTGTATCATCTGCAGCTACAATTCTCAGGCTCTGGGATGATCTCGGA 1467
Query 1435 AGTGCCAAGGATGAGAACCAAGATGGAACTGATGGATCATATGTAGAGTGTTACCTGAAC 1494
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1468 AGTGCCAAGGATGAGAACCAAGATGGAACTGATGGATCATACGTAGAGTGTTACCTGAAC 1527
Query 1495 GAGTACAAGGGATCAACTGTTGATGAAGCAAGAACACATGTTGCCCAGAAGATATCTAGA 1554
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1528 GAGTACAAGGGATCAACTGTTGATGAAGCAAGAACACATGTTGTCCAGAAGATATCTAAA 1587
Query 1555 GCATGGAAACGCTTGAACAGGGAGTGTCTGAATCCATGTCCATTCTCAAGATCATTCTCA 1614
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1588 GAATGGAAACGCTTGAACAGGGAGTGTCTGAATCCAAGTCCATTCTCAAGATCATTCTCC 1647
Query 1615 AAAGCTTGTCTCAACATTGCAAGAACAGTTCCTTTAATGTACAGCTATGATGATGATCAA 1674
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1648 AAAGCTTGTCTCAACATTGCAAGAACAGTTCCTCTAATGTACAGCTACGATGATGATCAA 1707
Query 1675 CGACTTCCCG------ACGAATATCTCAAGTCTCTAATGTAA 1710
|||||||||| ||||||||||||||||||||||||||
Sbjct 1708 CGACTTCCCGGTCTCGACGAATATCTCAAGTCTCTAATGTAA 1749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64143972580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5