BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G61688.1 Length=413 Score E Sequences producing significant alignments: (Bits) Value Ahg315208 jgi|Araly1|315208|fgenesh1_pm.C_scaffold_2000241 361 3e-99 Ahg907281 jgi|Araly1|907281|Al_scaffold_0002_362 300 6e-81 Ahg924851 jgi|Araly1|924851|scaffold_200412.1 128 3e-29 > Ahg315208 jgi|Araly1|315208|fgenesh1_pm.C_scaffold_2000241 Length=318 Score = 361 bits (195), Expect = 3e-99 Identities = 277/314 (88%), Gaps = 16/314 (5%) Strand=Plus/Plus Query 36 ATGGCTAACACCCCAAAAACCCTAATCGCATTTGTTTTCAGCGTTATTGTCATCATATCT 95 ||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| Sbjct 1 ATGGCTAACACCCCAAAAATTCTAATCGCATTTGTTTTCAGTGTTATTTTCATCATATCT 60 Query 96 TATGTTCATTGTCATACAACAATTGCAAGTGCCCCAAGCAGTGGTGAACCAACAACATAC 155 ||||||||||||||||||||||||||||||| ||| ||| | |||| | | |||||||| Sbjct 61 TATGTTCATTGTCATACAACAATTGCAAGTGTCCC-AGC-G-GGTGGA-C--CAACATAC 114 Query 156 GCAACAGGTCCTGCAC-T-----TTCGAAGCACTCGCACGA-CAACGATGGGATTTGCTT 208 ||||||||||||| || | |||| || || ||||| | | ||||||||| |||||| Sbjct 115 GCAACAGGTCCTGAACTTGCGGATTCGGAGTACCCGCACAAGC-ACGATGGGACTTGCTT 173 Query 209 CGTA-ACACCAGCGTGTTTTGCCCCAGGCCAATATGAAATAGGTTGCATTGTGTATTGTC 267 || | ||||||||||||| |||||||||||||||||||||||||||||||||||| |||| Sbjct 174 CG-ATACACCAGCGTGTTATGCCCCAGGCCAATATGAAATAGGTTGCATTGTGTACTGTC 232 Query 268 ACGAATCCCATTATAAACATTACAAATGTGTTAATAGATCATGTTGTTGTTATAATACAG 327 ||||| |||||||||| |||||||||||| | || ||| |||||||||||||||||| || Sbjct 233 ACGAAGCCCATTATAATCATTACAAATGTATCAAAAGAACATGTTGTTGTTATAATAGAG 292 Query 328 ATAAGAATGCGTCC 341 |||||||||||||| Sbjct 293 ATAAGAATGCGTCC 306 > Ahg907281 jgi|Araly1|907281|Al_scaffold_0002_362 Length=318 Score = 300 bits (162), Expect = 6e-81 Identities = 262/310 (85%), Gaps = 8/310 (3%) Strand=Plus/Plus Query 36 ATGGCTAACACCCCAAAAACCCTAATCGCATTTGTTTTCAGCGTTATTGTCATCATATCT 95 |||||||||||||||||||| ||||||||| ||||||| || || ||| ||||||||||| Sbjct 1 ATGGCTAACACCCCAAAAACTCTAATCGCAATTGTTTTGAGTGTCATTTTCATCATATCT 60 Query 96 TATGTTCATTGTCATACAACAATTGCAAGTGCCCCAAGCAGTG-GTGAACCAACAACATA 154 |||||||||||||||||||||| ||||||||||||| | || | | | ||||| ||| | Sbjct 61 TATGTTCATTGTCATACAACAACTGCAAGTGCCCCAGGGAGCGAG-GGACCAATAACGGA 119 Query 155 CGCAACAGGTCCTGCACTTTCGAAGCACTCGCACGA-CAACGATGGGATTTGCTTCGTA- 212 ||||| | |||||| | || | || |||| | | ||||||||| |||||||| | Sbjct 120 CGCAAAAAGTCCTGAAATTAGGGAGTGGGAGCACAAGC-ACGATGGGACTTGCTTCG-AT 177 Query 213 ACACCAGCGTGTTTTGCCCCAGGCCAATATGAAATAGGTTGCATTGTGTATTGTCACGAA 272 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 178 ACACCAGCGTGTTATGCCCCAGGCCAATATGAAATAGGTTGCATTGTGTATTGTCATGAA 237 Query 273 TCCCATTATAAACATTACAAATGTGTTAATAGAT-CATGTTGTTGTTATAATACAGATAA 331 ||||||||| |||||| |||| || ||| || | |||||||||||||||| |||||| Sbjct 238 GGCCATTATAATCATTACGCATGTTTTCATACATAC-TGTTGTTGTTATAATAGAGATAA 296 Query 332 GAATGCGTCC 341 ||||| |||| Sbjct 297 GAATGTGTCC 306 > Ahg924851 jgi|Araly1|924851|scaffold_200412.1 Length=343 Score = 128 bits (69), Expect = 3e-29 Identities = 110/130 (85%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 16 aaaaaaTAAGAATATAAAAAATGGCTAACACCCCAAAAACCCTAATCGCATTTGTTTTCA 75 ||||||| | ||||||||||||| || |||| |||||| |||||| ||||||||||| Sbjct 4 AAAAAATTA-TATATAAAAAATGGTTATCACCACAAAAAATCTAATCACATTTGTTTTCG 62 Query 76 GCGTTATTGTCATCATATCTTATGTTCATTGTCATACAACAATTGCAAGTGCCCCAAGCA 135 | || ||| ||||||||||||||||||||||||||||||||| ||| ||||| ||| || Sbjct 63 GTGTCATTTTCATCATATCTTATGTTCATTGTCATACAACAACTGCTAGTGCTCCAGGCG 122 Query 136 GTGGTGAACC 145 | |||| ||| Sbjct 123 GGGGTGGACC 132 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14842524121 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5