BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61688.1
Length=413
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315208 jgi|Araly1|315208|fgenesh1_pm.C_scaffold_2000241 361 3e-99
Ahg907281 jgi|Araly1|907281|Al_scaffold_0002_362 300 6e-81
Ahg924851 jgi|Araly1|924851|scaffold_200412.1 128 3e-29
> Ahg315208 jgi|Araly1|315208|fgenesh1_pm.C_scaffold_2000241
Length=318
Score = 361 bits (195), Expect = 3e-99
Identities = 277/314 (88%), Gaps = 16/314 (5%)
Strand=Plus/Plus
Query 36 ATGGCTAACACCCCAAAAACCCTAATCGCATTTGTTTTCAGCGTTATTGTCATCATATCT 95
||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||
Sbjct 1 ATGGCTAACACCCCAAAAATTCTAATCGCATTTGTTTTCAGTGTTATTTTCATCATATCT 60
Query 96 TATGTTCATTGTCATACAACAATTGCAAGTGCCCCAAGCAGTGGTGAACCAACAACATAC 155
||||||||||||||||||||||||||||||| ||| ||| | |||| | | ||||||||
Sbjct 61 TATGTTCATTGTCATACAACAATTGCAAGTGTCCC-AGC-G-GGTGGA-C--CAACATAC 114
Query 156 GCAACAGGTCCTGCAC-T-----TTCGAAGCACTCGCACGA-CAACGATGGGATTTGCTT 208
||||||||||||| || | |||| || || ||||| | | ||||||||| ||||||
Sbjct 115 GCAACAGGTCCTGAACTTGCGGATTCGGAGTACCCGCACAAGC-ACGATGGGACTTGCTT 173
Query 209 CGTA-ACACCAGCGTGTTTTGCCCCAGGCCAATATGAAATAGGTTGCATTGTGTATTGTC 267
|| | ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 174 CG-ATACACCAGCGTGTTATGCCCCAGGCCAATATGAAATAGGTTGCATTGTGTACTGTC 232
Query 268 ACGAATCCCATTATAAACATTACAAATGTGTTAATAGATCATGTTGTTGTTATAATACAG 327
||||| |||||||||| |||||||||||| | || ||| |||||||||||||||||| ||
Sbjct 233 ACGAAGCCCATTATAATCATTACAAATGTATCAAAAGAACATGTTGTTGTTATAATAGAG 292
Query 328 ATAAGAATGCGTCC 341
||||||||||||||
Sbjct 293 ATAAGAATGCGTCC 306
> Ahg907281 jgi|Araly1|907281|Al_scaffold_0002_362
Length=318
Score = 300 bits (162), Expect = 6e-81
Identities = 262/310 (85%), Gaps = 8/310 (3%)
Strand=Plus/Plus
Query 36 ATGGCTAACACCCCAAAAACCCTAATCGCATTTGTTTTCAGCGTTATTGTCATCATATCT 95
|||||||||||||||||||| ||||||||| ||||||| || || ||| |||||||||||
Sbjct 1 ATGGCTAACACCCCAAAAACTCTAATCGCAATTGTTTTGAGTGTCATTTTCATCATATCT 60
Query 96 TATGTTCATTGTCATACAACAATTGCAAGTGCCCCAAGCAGTG-GTGAACCAACAACATA 154
|||||||||||||||||||||| ||||||||||||| | || | | | ||||| ||| |
Sbjct 61 TATGTTCATTGTCATACAACAACTGCAAGTGCCCCAGGGAGCGAG-GGACCAATAACGGA 119
Query 155 CGCAACAGGTCCTGCACTTTCGAAGCACTCGCACGA-CAACGATGGGATTTGCTTCGTA- 212
||||| | |||||| | || | || |||| | | ||||||||| |||||||| |
Sbjct 120 CGCAAAAAGTCCTGAAATTAGGGAGTGGGAGCACAAGC-ACGATGGGACTTGCTTCG-AT 177
Query 213 ACACCAGCGTGTTTTGCCCCAGGCCAATATGAAATAGGTTGCATTGTGTATTGTCACGAA 272
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 178 ACACCAGCGTGTTATGCCCCAGGCCAATATGAAATAGGTTGCATTGTGTATTGTCATGAA 237
Query 273 TCCCATTATAAACATTACAAATGTGTTAATAGAT-CATGTTGTTGTTATAATACAGATAA 331
||||||||| |||||| |||| || ||| || | |||||||||||||||| ||||||
Sbjct 238 GGCCATTATAATCATTACGCATGTTTTCATACATAC-TGTTGTTGTTATAATAGAGATAA 296
Query 332 GAATGCGTCC 341
||||| ||||
Sbjct 297 GAATGTGTCC 306
> Ahg924851 jgi|Araly1|924851|scaffold_200412.1
Length=343
Score = 128 bits (69), Expect = 3e-29
Identities = 110/130 (85%), Gaps = 1/130 (1%)
Strand=Plus/Plus
Query 16 aaaaaaTAAGAATATAAAAAATGGCTAACACCCCAAAAACCCTAATCGCATTTGTTTTCA 75
||||||| | ||||||||||||| || |||| |||||| |||||| |||||||||||
Sbjct 4 AAAAAATTA-TATATAAAAAATGGTTATCACCACAAAAAATCTAATCACATTTGTTTTCG 62
Query 76 GCGTTATTGTCATCATATCTTATGTTCATTGTCATACAACAATTGCAAGTGCCCCAAGCA 135
| || ||| ||||||||||||||||||||||||||||||||| ||| ||||| ||| ||
Sbjct 63 GTGTCATTTTCATCATATCTTATGTTCATTGTCATACAACAACTGCTAGTGCTCCAGGCG 122
Query 136 GTGGTGAACC 145
| |||| |||
Sbjct 123 GGGGTGGACC 132
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14842524121
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5