BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G61700.1

Length=530
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg907276 jgi|Araly1|907276|Al_scaffold_0002_357                     350    8e-96


> Ahg907276 jgi|Araly1|907276|Al_scaffold_0002_357
Length=216

 Score =  350 bits (189),  Expect = 8e-96
 Identities = 207/216 (96%), Gaps = 0/216 (0%)
 Strand=Plus/Plus

Query  94   ATGATCGTCCCTGTTCGTTGTTTTACTTGTGGAAAGGTGATTGGGAACAAATGGGACACA  153
            |||||||| || || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  1    ATGATCGTACCAGTCCGTTGTTTTACTTGTGGAAAGGTGATTGGGAACAAATGGGATACA  60

Query  154  TACCTTGAACTTCTCCAGGCTGATTACGCTGAAGGGGATGCTCTTGACGCGCTTGGATTA  213
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct  61   TACCTTGAACTTCTCCAGGCTGATTACGCTGAAGGGGATGCTCTTGATGCGCTTGGGTTA  120

Query  214  GTCCGTTACTGCTGCAGGCGTATGCTTATGACTCATGTCGATCTAATCGAAAAGCTTCTA  273
            |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GTCCGTTACTGCTGTAGACGTATGCTTATGACTCATGTCGATCTAATCGAAAAGCTTCTA  180

Query  274  AACTACAACACTATGGAGAAATCCGACCCCAATTaa  309
            ||||||||||||||||||||||| ||||||||||||
Sbjct  181  AACTACAACACTATGGAGAAATCTGACCCCAATTAA  216



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19306728034


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5