BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61720.1
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924844 jgi|Araly1|924844|scaffold_200405.1 1683 0.0
> Ahg924844 jgi|Araly1|924844|scaffold_200405.1
Length=1069
Score = 1683 bits (911), Expect = 0.0
Identities = 1008/1056 (95%), Gaps = 2/1056 (0%)
Strand=Plus/Plus
Query 37 TAC-AATCATGGACCAGACTCTTACACACACCGGATCGAAGAAGGCTTGTGTCATTGGTG 95
||| ||||||||||||||||||||||||||||||| |||||||||||||||| || ||||
Sbjct 13 TACTAATCATGGACCAGACTCTTACACACACCGGAGCGAAGAAGGCTTGTGTTATCGGTG 72
Query 96 GCACGGGAAACTTAGCCTCTATTCTCATCAAGCATTTGCTTCAAAGTGGCTACAAAGTTA 155
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 73 GCACGGGAAACTTAGCCTCTATTCTCATTAAGCATTTGCTTCAAAGTGGCTACAAAGTTA 132
Query 156 ACACTACAGTTAGAGATCCAGAAAACGAGAAGAAAATAGCTCACCTTAGGAAACTTCAAG 215
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 133 ACACTACAGTTAGAGATCCAGAAAACGAGAAGAAAATAGCTCACCTTAGGCAACTTCAAG 192
Query 216 AGCTTGGCGACCTGAAGATCTTCAAGGCAGATTTGACTGATGAAGACAGTTTCGAATCCT 275
| ||||||||||| |||||||| ||||| ||||||||||||||||| ||||| || ||||
Sbjct 193 AACTTGGCGACCTCAAGATCTTTAAGGCGGATTTGACTGATGAAGAGAGTTTTGATTCCT 252
Query 276 CATTCTCCGGCTGTGAATACATCTTCCATGTCGCAACTCCGATCAACTTTAAATCCGAAG 335
||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 253 CATTCTCGGGCTGTGAATACATCTTCCATGTAGCAACGCCGATCAACTTTAAATCCGAAG 312
Query 336 ATCCCGAGAAAGACATGATCAAGCCGGCGATACAAGGAGTGATCAATGTGTTGAAATCTT 395
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 313 ATCCCGAGGAAGACATGATCAAGCCGGCGATACAAGGAGTGATCAATGTGTTTAAATCTT 372
Query 396 GCTTAAAATCGAAATCAGTCAAGCGTGTGATCTACACATCTTCAGCTGCTGCTGTTTCCA 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 GCTTAAAATCGAAATCAGTCAAGCGTGTGATCTACACATCTTCAGCTGCTGCTGTTTCCA 432
Query 456 TCAACAATCTTTCTGGAACCGGAATCGTGATGAACGAAGAAAACTGGACTGACGTTGAAT 515
|||||||| ||||||||||||| |||||||||| || ||||||||||||||| ||||||
Sbjct 433 TCAACAATGATTCTGGAACCGGACTCGTGATGAATGAGGAAAACTGGACTGACATTGAAT 492
Query 516 TTCTCACAGAGGAGAAGCCTTTTAACTGGGGTTACCCAATCTCGAAGGTGTTAGCAGAAA 575
|||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 493 TTCTCAGAGAGAAGAAGCCTTTTAACTGGGGTTACCCAATCTCGAAGATGTTAGCAGAAA 552
Query 576 AGACAGCTTGGGAATTTGCAAAAGAGAATAAGATCAATCTCGTTACCGTGATTCCGGCAC 635
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 553 AGACAGCTTGGGAATTTGCGGAAGAGAATAAGATCGATCTCGTTACCGTGATTCCGGCAC 612
Query 636 TTATAGCCGGAAACTCTCTCCTCTCCGATCCTCCGAGTAGCTTATCTCTCTCGATGTCTT 695
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 613 TTATAGCCGGAAACTCTCTCCTCTCCGATCCTCCGAGCAGTTTATCTCTCTCGATGTCTT 672
Query 696 TCATCACCGGGAAAGAAATGCATGTGACCGGTCTCAAGGAAATGCAGAAGCTATCTGGCT 755
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 673 TAATCACCGGGAAAGAAATGCATGTGACCGGTCTTAAGGAAATGCAGAAGCTATCTGGCT 732
Query 756 CGATCTCGTTCGTCCACGTAGACGATTTAGCTCGTGCCCATTTGTTTCTTGCGGAGAAAG 815
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 CGATCTCGTTCGTTCACGTAGACGATTTAGCTCGTGCCCATTTGTTTCTTGCGGAGAAAG 792
Query 816 AAACTGCTTCTGGTCGCTACATTTGCTGTGCTTACAACACAAGTGTTCCAGAGATTGCGG 875
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 793 AAACTGCTTCTGGTCGCTACATATGCTGTGCTTACAACACAAGTGTTCCAGAGATTGCTG 852
Query 876 ATTTTCTCATACAGAGATATCCTAAGTACAATGTGTTGTCAGAATTCGAAGAGGGCTTGT 935
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 853 ATCTTCTCATACAGAGATATCCTAAGTACAATGTGTTGTCAGAATTCCAAGAGGGCTTGT 912
Query 936 CGATTCCGAAATTGACACTATCTTCGCAAAAACTTATCAATGAAGGCTTTCGATTCGAAT 995
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 913 CGATTCCGAAATTGATACTATCTTCGGAAAAACTTATCAATGAAGGCTTTCGATTCGAAT 972
Query 996 ATGGGATCAATGAGATGTATGATCAAATGATAGAGTACTTCGAGTCAAAAGGATTGATCA 1055
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 973 ATGGGATCAATGAGATGTATGATCAGATGATAGAGTACTTCGAGTCCAAAGGATTGATCA 1032
Query 1056 AAGCTAAATAAACTTGACTTTTATAATGTCAAAATG 1091
|||||||| || ||||| |||||| |||| ||||||
Sbjct 1033 AAGCTAAAGAATCTTGATTTTTATTATGT-AAAATG 1067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45709377483
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5