BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61730.1
Length=1485
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475156 jgi|Araly1|475156|fgenesh2_kg.2__286__AT1G61730.1 1463 0.0
> Ahg475156 jgi|Araly1|475156|fgenesh2_kg.2__286__AT1G61730.1
Length=1321
Score = 1463 bits (792), Expect = 0.0
Identities = 1053/1175 (90%), Gaps = 33/1175 (3%)
Strand=Plus/Plus
Query 97 GATTCCGATTTGCCTCCTTGAAAATTTCCAATGACGAAGAAACTCAATCCACTGGAAGAT 156
||||||||||| |||||||||||| |||| |||||||||||||||||||| | ||||||
Sbjct 67 GATTCCGATTT-CCTCCTTGAAAA-TTCCGATGACGAAGAAACTCAATCCTTTAGAAGAT 124
Query 157 CCACCAACGGCAACTTCAAGCGACGAAGATGACGTCGAGACTTCCGAAGCTGGTGAAGCT 216
|||||||| || ||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 125 CCACCAACCGCTTCTTCAAGCGACGACGATGACGTCGAGACTTCAGAAGCTGGTGAGGCT 184
Query 217 TCAGACGATTCCTCTTCATCTGAAGAAG-ACGTACCAATCAAAATTCGAATCAAATCCCC 275
||||||||||| |||||||||||||||| || |||||||||| || ||||||| ||||
Sbjct 185 TCAGACGATTCTTCTTCATCTGAAGAAGAAC-AACCAATCAAAGCTCCAATCAAAACCCC 243
Query 276 TTCCGCCACAACCGCCGCC-GCTCCTCCAGCTAAATCCACCGCCGT-CTCCACCGCCGCT 333
||||||||| ||| || || | || || ||| |||| | | | || ||||||||
Sbjct 244 TTCCGCCACCACCACCACCACCGCCGCC-GCT-GCTCCAGCAAAATCCACCGCCGCCGCT 301
Query 334 GATTCAGATTCTGGATCCGAGACTGAAACAGATTCGGATTCTGAATCAACAAATCCACCG 393
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 302 GATTCAGATTCTGGATCCGAGACTGAAACAGATTCCGACTCTGAATCAACAAATCCACCG 361
Query 394 AATTCTGGATCTGGGAAGACAATCGCTTTAAACACAGTGAATCTAAAGAAGAAAGAGGAT 453
|||||||||||||| || |||||||| | | | ||||||||||||||||||||||||
Sbjct 362 AATTCTGGATCTGGCAAAACAATCGCCGTCTCCGCCGTGAATCTAAAGAAGAAAGAGGAT 421
Query 454 CCAACGTCGTCGTCAGCTACTTTAGCTTTACCGGCGATGAAATCAGGAACAAAACGGCCA 513
||||| ||||| | ||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 422 CCAACATCGTC--C-GCTGCTTTAGCTTTACCGGCGGTGAAATCAGGAACAAAACGGCCA 478
Query 514 GCGAGTGAAGCTGCTG-CTACGACTTCAACGAAACGAGTGAAGAAAGATGAAGAGAGTGT 572
|||||||||||| | | | ||||||||||||||||| || |||||||| ||||||||| |
Sbjct 479 GCGAGTGAAGCTAC-GACGACGACTTCAACGAAACGTGTCAAGAAAGACGAAGAGAGTAT 537
Query 573 GAAGAAACCAGGAGGTTTTCAAAGACTATGGAGTGAAGAAGACGAAATCT-TAGTGTTAC 631
||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 538 AAAGAAACCAGGAGCTTTTCAAAGACTATGGAGTGAAGAAGACGAAATCTCT-GTGTTAC 596
Query 632 AAGGAATGATTGATTTCAAAGCTGATACAGGGAAGTCTCCTTATGTAGATACTAATGCGT 691
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 597 AAGGAATGATTGATTTCAAAGCTGATACAGGGAAGTCTCCTTATGAAGATACTAATGCGT 656
Query 692 TTTACG-ATTTCTTGAAGAAATCGATTAGCTTTGAGGTTAGTAAGAATCAATTCATGGAT 750
|||||| ||||| | ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 657 TTTACGAATTTC-TCAAGAAATCGATTAGCTTTGAGGTTAGTAAGAATCAGTTCATGGAT 715
Query 751 AAGATTAGGAGTTTAAGGAAGAAGTATATTGGTAAAGAAGGAAGGAACGAACCTAGTTTT 810
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 716 AAGATTAGGAGTTTAAGGAAGAAGTATATTGGTAAAGAAGGAA--AA-GAACCTAGTTTT 772
Query 811 GTGAAAGCTCATGATAAGAAAGCTTTTGAATTGTCTAAGTTTATTTGGGGACCTAAAGGA 870
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 773 GTTAAAGCTCATGATAAGAAAGCTTTTGAATTGTCAAAGTTTATTTGGGGACCTAAAGGG 832
Query 871 ATAGCTCTTGATTCTAATGTTAAGTCGAACGGTGTATCGAAAAAGAGTGTGGCGAAGAAG 930
|| ||||||||||| |||||||||||||| ||||||||||||||||||| | |||||||
Sbjct 833 ATTGCTCTTGATTCCAATGTTAAGTCGAATGGTGTATCGAAAAAGAGTGCGAAGAAGAAG 892
Query 931 AAGATTGATTCTGTTAAGCAAGAGTTGGTGTTTGCCGGTGGT--T-CTTCAA---CTAAT 984
||||||||||||||||||||||||||||| |||| |||||| | |||||| |||||
Sbjct 893 AAGATTGATTCTGTTAAGCAAGAGTTGGTTTTTGTTGGTGGTGGTTCTTCAAATACTAAT 952
Query 985 GGTAAAAAAGTTGAAGAAGATGGTGGTGATGATGGATGTGATTGGTTTGATAACTCGTCT 1044
||||||||||||||||| | ||||| |||||||||| |||||||||||||||||||||||
Sbjct 953 GGTAAAAAAGTTGAAGATGGTGGTGATGATGATGGAGGTGATTGGTTTGATAACTCGTCT 1012
Query 1045 CTTGTTAGGATGATTGCTAGTTTGGGTGTTGATGAGTATTATGTGAAGCAGCAATGGAGT 1104
|||||| | ||||||||| |||| || ||||||||||||||||||||||| |||||||||
Sbjct 1013 CTTGTTCGAATGATTGCTGGTTTAGGAGTTGATGAGTATTATGTGAAGCAACAATGGAGT 1072
Query 1105 TTGGTTTCGGTTGAGAGTAAGAAGATTGTTGAAGAGAAGTAT-AAGTTGTTGCAAGCTAA 1163
|||||| ||||||||| |||||||||| |||||||||||| | |||||||||||||||||
Sbjct 1073 TTGGTTCCGGTTGAGACTAAGAAGATTATTGAAGAGAAGT-TCAAGTTGTTGCAAGCTAA 1131
Query 1164 GGAG-TTGGAATTTGTGTTGGAGAAGACTAAGTTTTTGAATGAGGTTG-CTTCTATGTTC 1221
|||| ||| ||||||| ||||||||||| ||||||||| | ||||| | | |||||| ||
Sbjct 1132 GGAGCTTG-AATTTGTATTGGAGAAGACGAAGTTTTTGCAGGAGGT-GACGTCTATGATC 1189
Query 1222 GTTGAAGCTTCTAAGAACAAGCCATTAGATACATA 1256
||||||||||| ||||| || ||||||||||||||
Sbjct 1190 GTTGAAGCTTCGAAGAAAAA-CCATTAGATACATA 1223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55573667455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5