BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G61750.1 Length=1026 Score E Sequences producing significant alignments: (Bits) Value Ahg924840 jgi|Araly1|924840|scaffold_200401.1 715 0.0 > Ahg924840 jgi|Araly1|924840|scaffold_200401.1 Length=590 Score = 715 bits (387), Expect = 0.0 Identities = 490/540 (91%), Gaps = 6/540 (1%) Strand=Plus/Plus Query 96 CTATTGCTACACATCAGGAAACTACACACCGAACAGTTCGTACAAATCCAATCTAGATAC 155 ||||||||||||||||||||||||||| | |||||||||||||||| |||||||||| | Sbjct 53 CTATTGCTACACATCAGGAAACTACACGGCAAACAGTTCGTACAAATACAATCTAGATTC 112 Query 156 TTTAATATCCGTTCTTGATTCTCAATCATCCAACAAAGGCTTTTATAGCTACGCCTCGGG 215 ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| | Sbjct 113 TTTAATATCCGTTCTTGATTCTCAATCATCCAACAAAGGTTTTTACAGCTACGCCTCCAG 172 Query 216 TTCTTCCCCAACCACAACAGTGTACGGAAGTTATCTATGTCGCGGAGATATCTCGTCCTC 275 ||||||| ||| ||||||||| || |||| |||||||||||| ||||| || ||||| || Sbjct 173 TTCTTCCTCAAGCACAACAGTTTATGGAACTTATCTATGTCGAGGAGACATTTCGTCTTC 232 Query 276 AACTTGTGAAACATGCATCTCAAGAGCATCCAAAAACGTTTTTATATGGTGTCCGGTCCA 335 || |||||||||||||||||||||||||||||||||||||||| ||||||| | ||||| Sbjct 233 AAAATGTGAAACATGCATCTCAAGAGCATCCAAAAACGTTTTTAAATGGTGTGCTGTCCA 292 Query 336 AAAAGAAGCTATCATATGGTATGAAGAATGCTTCCTCAGGTACTCCAGCCGTAAGATTTT 395 ||| ||||||||||||||||||||||||||||||||||||||||||| || | ||||||| Sbjct 293 AAACGAAGCTATCATATGGTATGAAGAATGCTTCCTCAGGTACTCCAACCATCAGATTTT 352 Query 396 CTCGATTCTTGATCAAGGTCCATTTGTTACATGGAC-ATCTTACGATACCACGTTGTACC 454 |||||||||||||||||| ||||||||||||||||| | |||| ||||||| |||||||| Sbjct 353 CTCGATTCTTGATCAAGGGCCATTTGTTACATGGACGA-CTTATGATACCATGTTGTACC 411 Query 455 AGTTTTATTTCATTAACACCGTGGAATATCGTATGGACCGGTTGATACAAGAAGCCTATT 514 | | |||||||||||| |||||||||||| |||| |||||| |||||||||||||||||| Sbjct 412 AATCTTATTTCATTAATACCGTGGAATATAGTATAGACCGGCTGATACAAGAAGCCTATT 471 Query 515 CGAGCTCTTCATATTTTGCGGAAGAAACTTATCATGTCAGTTATCTTGGAGAAGTTTACG 574 || | |||||||||||||| ||||||||||||||||| |||| ||||||||||||||||| Sbjct 472 CGCGTTCTTCATATTTTGCAGAAGAAACTTATCATGTGAGTTGTCTTGGAGAAGTTTACG 531 Query 575 ATCTAA-ATGGATTGGTACA--GTGCACACCCGATCTGAATCAGTATGATTGCTATAGGT 631 | |||| | ||||||||| | ||||||||||||||| |||||||||||||||||||||| Sbjct 532 ACCTAATA-GGATTGGTATACTGTGCACACCCGATCTAAATCAGTATGATTGCTATAGGT 590 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38161039917 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5