BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61750.1
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924840 jgi|Araly1|924840|scaffold_200401.1 715 0.0
> Ahg924840 jgi|Araly1|924840|scaffold_200401.1
Length=590
Score = 715 bits (387), Expect = 0.0
Identities = 490/540 (91%), Gaps = 6/540 (1%)
Strand=Plus/Plus
Query 96 CTATTGCTACACATCAGGAAACTACACACCGAACAGTTCGTACAAATCCAATCTAGATAC 155
||||||||||||||||||||||||||| | |||||||||||||||| |||||||||| |
Sbjct 53 CTATTGCTACACATCAGGAAACTACACGGCAAACAGTTCGTACAAATACAATCTAGATTC 112
Query 156 TTTAATATCCGTTCTTGATTCTCAATCATCCAACAAAGGCTTTTATAGCTACGCCTCGGG 215
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 113 TTTAATATCCGTTCTTGATTCTCAATCATCCAACAAAGGTTTTTACAGCTACGCCTCCAG 172
Query 216 TTCTTCCCCAACCACAACAGTGTACGGAAGTTATCTATGTCGCGGAGATATCTCGTCCTC 275
||||||| ||| ||||||||| || |||| |||||||||||| ||||| || ||||| ||
Sbjct 173 TTCTTCCTCAAGCACAACAGTTTATGGAACTTATCTATGTCGAGGAGACATTTCGTCTTC 232
Query 276 AACTTGTGAAACATGCATCTCAAGAGCATCCAAAAACGTTTTTATATGGTGTCCGGTCCA 335
|| |||||||||||||||||||||||||||||||||||||||| ||||||| | |||||
Sbjct 233 AAAATGTGAAACATGCATCTCAAGAGCATCCAAAAACGTTTTTAAATGGTGTGCTGTCCA 292
Query 336 AAAAGAAGCTATCATATGGTATGAAGAATGCTTCCTCAGGTACTCCAGCCGTAAGATTTT 395
||| ||||||||||||||||||||||||||||||||||||||||||| || | |||||||
Sbjct 293 AAACGAAGCTATCATATGGTATGAAGAATGCTTCCTCAGGTACTCCAACCATCAGATTTT 352
Query 396 CTCGATTCTTGATCAAGGTCCATTTGTTACATGGAC-ATCTTACGATACCACGTTGTACC 454
|||||||||||||||||| ||||||||||||||||| | |||| ||||||| ||||||||
Sbjct 353 CTCGATTCTTGATCAAGGGCCATTTGTTACATGGACGA-CTTATGATACCATGTTGTACC 411
Query 455 AGTTTTATTTCATTAACACCGTGGAATATCGTATGGACCGGTTGATACAAGAAGCCTATT 514
| | |||||||||||| |||||||||||| |||| |||||| ||||||||||||||||||
Sbjct 412 AATCTTATTTCATTAATACCGTGGAATATAGTATAGACCGGCTGATACAAGAAGCCTATT 471
Query 515 CGAGCTCTTCATATTTTGCGGAAGAAACTTATCATGTCAGTTATCTTGGAGAAGTTTACG 574
|| | |||||||||||||| ||||||||||||||||| |||| |||||||||||||||||
Sbjct 472 CGCGTTCTTCATATTTTGCAGAAGAAACTTATCATGTGAGTTGTCTTGGAGAAGTTTACG 531
Query 575 ATCTAA-ATGGATTGGTACA--GTGCACACCCGATCTGAATCAGTATGATTGCTATAGGT 631
| |||| | ||||||||| | ||||||||||||||| ||||||||||||||||||||||
Sbjct 532 ACCTAATA-GGATTGGTATACTGTGCACACCCGATCTAAATCAGTATGATTGCTATAGGT 590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38161039917
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5