BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G61760.1 Length=675 Score E Sequences producing significant alignments: (Bits) Value Ahg924839 jgi|Araly1|924839|scaffold_200400.1 1053 0.0 > Ahg924839 jgi|Araly1|924839|scaffold_200400.1 Length=720 Score = 1053 bits (570), Expect = 0.0 Identities = 640/675 (95%), Gaps = 0/675 (0%) Strand=Plus/Plus Query 1 ATGCACAACAAGGTCGATTCTTTACCGGTTCGATCGAACCCATCAACGCGACCCATATCC 60 |||||||||||||||||||| |||||||||||||||||||||||||| || || |||||| Sbjct 26 ATGCACAACAAGGTCGATTCGTTACCGGTTCGATCGAACCCATCAACCCGGCCTATATCC 85 Query 61 CGTCACCACTCGGCGAGTAACATCGTTCATCGGGTTAAAGAAAGCCTCACAACAAGAGTC 120 ||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 86 CGTCACCACTCGGGGAGCAACATCGTTCATCGGGTCAAAGAAAGCCTCACAACAAGAGTC 145 Query 121 TCTAAACTCATATGTGCCATTTTCTTATCTCTTTTACTATGTTTAGGCATTATCACTTTC 180 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 146 TCTAAACTCATATGTGCCATTTTCTTATCTCTTTTACTATGTTTAGGCATTCTCACTTTC 205 Query 181 ATCTTATGGATCAGTCTACAACCACACCGACCACGCGTCCATATCCGCGGGTTCTCAATC 240 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 206 ATCTTATGGATCAGTCTACGACCACACCGACCACGCGTCCATATCCGCGGGTTCTCTATC 265 Query 241 TCTGGTCTATCCAGGCCCGACGGGTTCGAGACGTCACACATAAGCTTCAAGATAACGGCT 300 || |||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| Sbjct 266 TCGGGTCTATCCAGGCCTGACGGGTTCGAGACATCACATATAAGCTTCAAGATAACGGCT 325 Query 301 CATAACCCGAACCAAAACGTCGGCATTTACTACGATTCCATGGAAGGATCCGTTTACTAC 360 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 326 CATAACCCAAACCAAAACGTTGGCATTTACTACGATTCCATGGAAGGATCCGTTTACTAC 385 Query 361 AAAGAGAAACGGATCGGTTCGACTAAACTTACTAATCCGTTTTACCAAGACCCAAAGAAC 420 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 386 AAAGAGAAACGGATCGGGTCGACTAAACTCACTAATCCGTTTTACCAAGACCCAAAGAAC 445 Query 421 ACGAGCTCGATCGACGGAGCCTTAAGTCGACCCGCAATGGCCGTGAATAAGGACCGTTGG 480 ||||||| | |||||||||||||| |||||||||||||||| |||| |||||| || ||| Sbjct 446 ACGAGCTGGGTCGACGGAGCCTTAGGTCGACCCGCAATGGCAGTGACTAAGGAACGCTGG 505 Query 481 ATGGAGATGGAACGAGACAGGAACCAAGGGAAGATAATGTTCCGTTTGAAGGTAAGGTCC 540 ||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| Sbjct 506 ATGGAGATGGAACGAGACAGGAATCAAGGGAAGATAGTGTTCCGTTTGGAGGTAAGGTCC 565 Query 541 ATGATACGTTTTAAGGTGTACACATGGCATAGTAAGAGTCACAAGATGTACGCAAGCTGT 600 |||||||||||||||||||||||||||| |||||||| || ||||||||||||| |||| Sbjct 566 GTGATACGTTTTAAGGTGTACACATGGCACAGTAAGAGCCATAAGATGTACGCAAACTGT 625 Query 601 TATATTGAGATCGGTTGGGATGGAATGTTGTTGAGTGCGACTAAAGACAAGAGATGTCCA 660 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 626 TATATTGAGATCGGTTGGGATGGAATGTTGTTGAGTGGGACTAAAGACAAGAAATGTCCA 685 Query 661 GTTTATTTCACTTGA 675 ||||||||||||||| Sbjct 686 GTTTATTTCACTTGA 700 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24779896050 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5