BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61760.1
Length=675
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924839 jgi|Araly1|924839|scaffold_200400.1 1053 0.0
> Ahg924839 jgi|Araly1|924839|scaffold_200400.1
Length=720
Score = 1053 bits (570), Expect = 0.0
Identities = 640/675 (95%), Gaps = 0/675 (0%)
Strand=Plus/Plus
Query 1 ATGCACAACAAGGTCGATTCTTTACCGGTTCGATCGAACCCATCAACGCGACCCATATCC 60
|||||||||||||||||||| |||||||||||||||||||||||||| || || ||||||
Sbjct 26 ATGCACAACAAGGTCGATTCGTTACCGGTTCGATCGAACCCATCAACCCGGCCTATATCC 85
Query 61 CGTCACCACTCGGCGAGTAACATCGTTCATCGGGTTAAAGAAAGCCTCACAACAAGAGTC 120
||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 86 CGTCACCACTCGGGGAGCAACATCGTTCATCGGGTCAAAGAAAGCCTCACAACAAGAGTC 145
Query 121 TCTAAACTCATATGTGCCATTTTCTTATCTCTTTTACTATGTTTAGGCATTATCACTTTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 146 TCTAAACTCATATGTGCCATTTTCTTATCTCTTTTACTATGTTTAGGCATTCTCACTTTC 205
Query 181 ATCTTATGGATCAGTCTACAACCACACCGACCACGCGTCCATATCCGCGGGTTCTCAATC 240
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 206 ATCTTATGGATCAGTCTACGACCACACCGACCACGCGTCCATATCCGCGGGTTCTCTATC 265
Query 241 TCTGGTCTATCCAGGCCCGACGGGTTCGAGACGTCACACATAAGCTTCAAGATAACGGCT 300
|| |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 266 TCGGGTCTATCCAGGCCTGACGGGTTCGAGACATCACATATAAGCTTCAAGATAACGGCT 325
Query 301 CATAACCCGAACCAAAACGTCGGCATTTACTACGATTCCATGGAAGGATCCGTTTACTAC 360
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 326 CATAACCCAAACCAAAACGTTGGCATTTACTACGATTCCATGGAAGGATCCGTTTACTAC 385
Query 361 AAAGAGAAACGGATCGGTTCGACTAAACTTACTAATCCGTTTTACCAAGACCCAAAGAAC 420
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 386 AAAGAGAAACGGATCGGGTCGACTAAACTCACTAATCCGTTTTACCAAGACCCAAAGAAC 445
Query 421 ACGAGCTCGATCGACGGAGCCTTAAGTCGACCCGCAATGGCCGTGAATAAGGACCGTTGG 480
||||||| | |||||||||||||| |||||||||||||||| |||| |||||| || |||
Sbjct 446 ACGAGCTGGGTCGACGGAGCCTTAGGTCGACCCGCAATGGCAGTGACTAAGGAACGCTGG 505
Query 481 ATGGAGATGGAACGAGACAGGAACCAAGGGAAGATAATGTTCCGTTTGAAGGTAAGGTCC 540
||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||
Sbjct 506 ATGGAGATGGAACGAGACAGGAATCAAGGGAAGATAGTGTTCCGTTTGGAGGTAAGGTCC 565
Query 541 ATGATACGTTTTAAGGTGTACACATGGCATAGTAAGAGTCACAAGATGTACGCAAGCTGT 600
|||||||||||||||||||||||||||| |||||||| || ||||||||||||| ||||
Sbjct 566 GTGATACGTTTTAAGGTGTACACATGGCACAGTAAGAGCCATAAGATGTACGCAAACTGT 625
Query 601 TATATTGAGATCGGTTGGGATGGAATGTTGTTGAGTGCGACTAAAGACAAGAGATGTCCA 660
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 626 TATATTGAGATCGGTTGGGATGGAATGTTGTTGAGTGGGACTAAAGACAAGAAATGTCCA 685
Query 661 GTTTATTTCACTTGA 675
|||||||||||||||
Sbjct 686 GTTTATTTCACTTGA 700
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24779896050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5