BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61770.1
Length=1195
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475153 jgi|Araly1|475153|fgenesh2_kg.2__283__AT1G61770.1 1953 0.0
> Ahg475153 jgi|Araly1|475153|fgenesh2_kg.2__283__AT1G61770.1
Length=1192
Score = 1953 bits (1057), Expect = 0.0
Identities = 1152/1197 (96%), Gaps = 9/1197 (1%)
Strand=Plus/Plus
Query 3 aaaaaaGGCCCAAAGAGTA-TTTTCCTC-CGAATTCGCCGACGACTAATCACGAGATGGC 60
||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||
Sbjct 1 AAAAAAGGCCCAAAGAGTATTTTTCCTCTC-AATTCGCCGACGACTAATCACGAGATGGC 59
Query 61 GCCGCCGGTGACGGAGCGGTGGTGCTTAGCTTTGATTCTTCTCTTTCTCTCCTTGTTCGT 120
||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||
Sbjct 60 GCCGCCGGTGACGGAGCGGTGGTGCTTGGCTTTGATTCTTCTCTTTATCTCCTTATTCGT 119
Query 121 CCAATCTTCAACGGCAATTTACTGCGGTGCTGAAGATTGTTATGCTCTTCTCGGAGTCGC 180
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 120 CCAATCTTCGACGGCAATTTATTGCGGTGCTGAAGATTGTTATGCTCTTCTCGGAGTTGC 179
Query 181 TCAAGATGCGAACGCATCGGATATCAAGAGATCTTATTATAAGCTCTCTCTTCAACATCA 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 180 TCAAGATGCGAACGCATCGGATATCAAGAGATCTTATTATAAGCTTTCTCTTCAACATCA 239
Query 241 TCCAGATAAGAATCCGGATCCTGAATCGAGGAAACTGTTTGTTAAAATCGCCACTGCTTA 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 TCCAGATAAGAATCCGGATCCTGAATCGAGGAAACTGTTTGTGAAAATCGCCACTGCTTA 299
Query 301 TGAGATTTTGAAAGATAATACTACTCGGGCACAATATGATTATGCAATTGAACATCCAGA 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGAGATTTTGAAAGATAACACTACTCGGGCACAATATGATTATGCAATTGAACATCCAGA 359
Query 361 AGAGGTATTTTACAACACCGCTCAATATTACCGCGCGAAATATGGACATAAATCGGATCC 420
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 360 AGAGGTATTTTACAACACCGCTCAATATTACCGGGCGAAATATGGACATAAGTCGGATCC 419
Query 421 CCGTGCTGTTCTT-GTTGGTCTATTGGTGGTTTTATCTGCATTTCAATATCTGAACAACG 479
|||||||||| || |||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 420 CCGTGCTGTT-TTGGTTGGTCTATTGGTAGTTTTGTCTGCATTTCAGTATCTGAACAACG 478
Query 480 TGGCAAGGTATAATGAGGCTATAGCGACGGTTAAGCGAACACCTGCTTACAAAAATAAGC 539
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 479 TGGCAAGGTATAATGAGGCTATAGCGACGGTTAAGCGAACACCTGCTTATAAAAATAAGC 538
Query 540 TCAAGGCATTAGAACTCGAACGCACAGGTGGAGTAAGTAACAAGAAGAAGGGTTCAAAGC 599
||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||
Sbjct 539 TCAAGGCATTAGAACTCGAACGCACGGGTGGAGTAACTAACAAAAAGAAGGGTTCAAAGC 598
Query 600 AGATTGACCAGAAACTACAGGAAGAGCTAAGCAACGAACTTGACTTACAAATCAAAGGAG 659
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 599 AGATTGACCAGAAACTACAGGAAGAGCTAAGCAACGAACTCGACTTACAAATCAAAGGAG 658
Query 660 CTGAAAAACCATCGGTCTGGGAACTTCTCGGTGTTCGATTCATTCTCCTACCATACACTA 719
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CTGAAAAACCATCCGTCTGGGAACTTCTCGGTGTTCGATTCATTCTCCTACCATACACTA 718
Query 720 TCATTAAGCTTCTAGTATGGTACAGCAGTTGGGTGTGGAGATATAAGGTCAAGAAAGCTC 779
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TCATTAAGCTTCTAGCATGGTACAGCAGTTGGGTGTGGAGATATAAGGTCAAGAAAGCTC 778
Query 780 CTTATTCATGGGAAGACGCATCATACCTAACCCGAAGATCACTTAGTGTGCCTGCCGACG 839
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 779 CTTATTCATGGGAAGACGCATCGTACCTAACCCGAAGATCACTTAGTGTGCCTGCCGACG 838
Query 840 CATGGGCTAATCTAGATGAATATAGGAAGGAAGATCTGGTGCAGAAAAGGCTGTGGGAGA 899
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 839 CATGGGCTAATCTAGATGAATATAGGAAGGAAGATCTGGTACAGAAAAGGCTGTGGGAGA 898
Query 900 AGCAGAATCTTGAGAATTACTTTGCAGAAATGCGTAAAGAATCGAAGCGGAGAAGATAGG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AGCAGAATCTTGAGAATTACTTTGCAGAAATGCGTAAAGAATCGAAGCGGAGAAGATAGG 958
Query 960 -TCACTTGTCGCTTACCATGCAACGATACAAAATACAATTCGAGTTTCAGAGACACCATT 1018
| ||||||| |||||||||| | |||||| || ||||||| |||||||||||||| ||
Sbjct 959 CT-ACTTGTCACTTACCATGCCAGGATACACAAGACAATTCAAGTTTCAGAGACACT-TT 1016
Query 1019 TTTACCATTATCACTCTACTTTAATGTTATAAGAACGAACCAGTTACAAGAAGAGACACT 1078
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1017 TTTACCATTATCACTCTACTTTAATGTTATAAGAACGAACAAGTTACAAGAAGAGACAGT 1076
Query 1079 AGTATAATTGTACGGTACCAGGAACCAAATCTCAATTTGTCATATACAAGATGAAATCAT 1138
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||
Sbjct 1077 AGTATAATTGTACGGTACCAGGAACCAAATCTCAATTTGGCATATACAAGACGAA-TCAT 1135
Query 1139 GTCTGTCAATGGACATGGTCCAGTTTTGACTCAGTTTTGTTTAAAACCAATTTGCTC 1195
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1136 GTCTGTCAATGGACATGGTCCAGTTTTGACTCAATTTTGTTTAAAACAAATTTGCTC 1192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44603812890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5