BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G61780.1

Length=641
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg475152 jgi|Araly1|475152|fgenesh2_kg.2__282__AT1G61780.1          726    0.0  


> Ahg475152 jgi|Araly1|475152|fgenesh2_kg.2__282__AT1G61780.1
Length=522

 Score =  726 bits (393),  Expect = 0.0
 Identities = 468/504 (93%), Gaps = 6/504 (1%)
 Strand=Plus/Plus

Query  93   TTTAGGCGTTAGGGTTTCTTCATATTTCTCTCTCGGAAGAAGAAGATGGTTTGCGATAAG  152
            |||||||| ||||||||||||||    | ||||| ||||||||||||||||||||| |||
Sbjct  1    TTTAGGCGCTAGGGTTTCTTCAT-CCAC-CTCTCCGAAGAAGAAGATGGTTTGCGACAAG  58

Query  153  TGTGAGAAGAAGTTATCGAAAGTGATAGTTCCTGATAAGTGGAAGGATGGTGCTCGTAAT  212
            ||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||| |||
Sbjct  59   TGTGAGAAGAAGTTATCTAAAGTGATAGTGCCAGATAAATGGAAGGATGGTGCTCGCAAT  118

Query  213  GTAACTGAAGGTGGTGGTCGTAAAATCAATGAGAATAAGCTTCTCTCCAAGAAGAATAGA  272
            ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct  119  GTAACTGAAGGTGGTGGCCGTAAAATCAATGAGAACAAGCTTCTCTCTAAGAAGAATAGA  178

Query  273  TGGTCACCTTACAGTACCTGTACCACAAAATGTATGATCTGCAAGCAGCAAGTGCATCAA  332
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  179  TGGTCACCTTACAGTACCTGTACCACAAAATGCATGATCTGCAAGCAGCAAGTGCATCAA  238

Query  333  GATGGTAAATACTGTCACACATGTGCCTATAGCAAAGGAGTGTGCGCAATGTGCGGGAAG  392
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  239  GATGGTAAATACTGTCACACATGTGCCTATAGCAAAGGAGTGTGCGCAATGTGCGGAAAG  298

Query  393  CAAGTGTTGGACACCAAGATGTACAAGCAAAGCAATGTATAAACAAATCCGCAAGCGTTT  452
            ||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||
Sbjct  299  CAAGTGTTGGACACCAAGATGTACAAGCAAAGCAATGTATAAACAAATGAGCAAGCATTT  358

Query  453  CACATTTTAGTTTTTGTCCCTTTGATGTCAACGTTGTATCCTCTCACTCATGTAtttttt  512
            |||||||||||||  ||||||||||||||||| |||||||||||||||||||||||  ||
Sbjct  359  CACATTTTAGTTTCAGTCCCTTTGATGTCAACTTTGTATCCTCTCACTCATGTATTCCTT  418

Query  513  tGTA-TCGGTTTCCTCCGGTTTTAATATAACCAAACAGAATCTTGTT-GCTTCACTGTGT  570
            |||| | |||||||| |||||||| |||||| ||||| ||||||||| | ||||| ||||
Sbjct  419  TGTACT-GGTTTCCTTCGGTTTTAGTATAACAAAACAAAATCTTGTTTG-TTCACAGTGT  476

Query  571  TTCTTGACTGATCATAAAGTTAAT  594
            ||||||||| ||||||||||||||
Sbjct  477  TTCTTGACTAATCATAAAGTTAAT  500



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23483716872


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5