BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G61790.1 Length=1041 Score E Sequences producing significant alignments: (Bits) Value Ahg924835 jgi|Araly1|924835|scaffold_200396.1 1757 0.0 Ahg334448 jgi|Araly1|334448|fgenesh1_pg.C_scaffold_1001013 431 5e-120 > Ahg924835 jgi|Araly1|924835|scaffold_200396.1 Length=1084 Score = 1757 bits (951), Expect = 0.0 Identities = 1013/1043 (97%), Gaps = 4/1043 (0%) Strand=Plus/Plus Query 1 ATGGCGCTCAAATCAAAACTCGTCTCTCTTCTCTTCCTCATAGCAACACTATCATCCACA 60 |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 24 ATGGCGGTCAAATCAAAACTCGTCTCTCTTCTCTTCCTCGTAGCAACACTATCATCCGCA 83 Query 61 TTCGCAGCTTCGTTTTCCGATTCGGATTCCGATTCAGATCTTCTCAACGAACTTGTATCT 120 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 84 TTCGCAGCTTCGTTTTCCGATTCAGATTCCGATTCAGATCTTCTCAACGAACTTGTATCT 143 Query 121 CTCAGATCAACAAGCGAATCAGGCGTAATCCATCTCGATGACCATGGAATCTCAAAATTC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 144 CTCAGATCAACAAGCGAATCAGGCGTAATCCATCTCGATGACCATGGAATCTCAAAATTC 203 Query 181 CTAACCTCCGCTTCCACGCCTCGTCCTTACTCGTTACTCGTCTTCTTCGACGCTACTCAA 240 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 204 CTAACCTCCGCTTCCACTCCTCGTCCTTACTCGTTACTCGTCTTCTTCGACGCAACTCAG 263 Query 241 CTCCACAGCAAAAACGAGCTTCGTCTTCAAGAGCTCCGTCGCGAATTCGGCATCGTCTCC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 264 CTCCACAGCAAAAACGAGCTTCGTCTTCAAGAGCTCCGTCGCGAATTCGGCATCGTCTCC 323 Query 301 GCTTCATTCCTCGCTAACAACAATGGATCTGAAGGAACTAAGCTTTTCTTCTGTGAGATC 360 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 324 GCTTCATTCCTCGCTAACAACAATGGATCTGAAGGAACTAAGCTTTTCTTCTGCGAGATC 383 Query 361 GAGTTTTCGA-AGTCTCAATCTTCGTTCCAGCTCTTTGGCGTTAACGCTTTACCTCACAT 419 |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 384 GAGTTTTC-ACAGTCTCAATCTTCGTTCCAGCTCTTTGGCGTTAACGCTTTACCTCACAT 442 Query 420 TCGTCTTGTAAGTCCTTCGATATCGAATCTACGTGATGAATCTGGTCAAATGGATCAATC 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 443 TCGTCTTGTAAGTCCTTCGATATCGAATCTACGTGATGAATCTGGTCAAATGGATCAATC 502 Query 480 GGATTACTCTAGATTAGCTGAATCAATGGCTGAGTTTGTTGAGCAACGAACTAAACTCAA 539 |||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| Sbjct 503 GGATTACTCTAGATTAGCGGAATCAATGGCTGAGTTCGTCGAGCAACGAACTAAACTCAA 562 Query 540 GGTCGGTCCTATTCAACGTCCACCGCTACTTTCGAAACCACAGATCGGTATTATCGTTGC 599 ||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| Sbjct 563 GGTCGGTCCTATTCAACGTCCACCGCTTCTTTCGAAACCGCAGATCGGCGTTATCGTTGC 622 Query 600 GTTGATCGTTATCGCTACTCCGTTTATCATCAAAAGAGTTTTGAAAGGAGAAACTATTCT 659 ||||||||||||||||||||||||||| |||||| ||||| | ||||||||||||||||| Sbjct 623 GTTGATCGTTATCGCTACTCCGTTTATTATCAAACGAGTTCTAAAAGGAGAAACTATTCT 682 Query 660 TCATGATACTAGACTTTGGTTATCTGGTGCTATCTTCATTTACTTCTTTAGTGTTGCTGG 719 |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 683 TCATGATAGTAGACTTTGGTTATCTGGTGCTATCTTCATTTACTTCTTTAGCGTTGCTGG 742 Query 720 TACAATGCACAACATTATCAGGAAAATGCCGATGTTTCTTCAAGATCGTAACGATCCGAA 779 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 743 TACAATGCACAACATTATCAGGAAAATGCCGATGTTTCTTCAAGATCGTAACGATCCGAA 802 Query 780 TAAGCTTGTGTT-TTTCTACCAAGGATCTGGAATGCAGCTTGGAGCTGAAGGATTTGCTG 838 |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 803 TAAGCTTGTGTTCTTT-TACCAAGGATCTGGAATGCAGCTTGGAGCTGAAGGATTTGCTG 861 Query 839 TTGGATTCTTGTATACTGTTGTTGGATTGCTTTTGGCGTTTGTTACCAATGTGCTTGTTC 898 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 862 TTGGATTCTTGTATACCGTTGTTGGATTGCTTTTGGCGTTTGTTACCAATGTGCTTGTTC 921 Query 899 GAGTGAAGAATATTACTGCACAAAGGTTGATTATGCTTTTGGCTTTGTTCATATCGTTCT 958 ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 922 GAGTGAAGAATCTTACTGCACAAAGATTGATTATGCTTTTGGCTTTGTTCATATCGTTCT 981 Query 959 GGGCTGTGAAGAAAGTTGTTTACTTGGATAACTGGAAGACTGGATATGGAATTCATCCGT 1018 ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 982 GGGCTGTGAAGAAAGTTGTTTACTTGGATAATTGGAAGACTGGATACGGAATTCATCCGT 1041 Query 1019 ATTGGCCATCGAGTTGGCGTTGA 1041 ||||||||||||||||||||||| Sbjct 1042 ATTGGCCATCGAGTTGGCGTTGA 1064 > Ahg334448 jgi|Araly1|334448|fgenesh1_pg.C_scaffold_1001013 Length=1410 Score = 431 bits (233), Expect = 5e-120 Identities = 737/972 (76%), Gaps = 68/972 (7%) Strand=Plus/Plus Query 91 GATTCAGATCTTC-TCAACGAACTTGTATCTCTCAGATCAACAAG-CGAATCAGGCGT-A 147 |||||||||| || | ||||| ||||| || ||| ||||| | | ||||||||| | | Sbjct 79 GATTCAGATC-TCATAAACGAGCTTGTTTCGCTCCGATCAGC-CGCCGAATCAGGTTTGA 136 Query 148 ATCCATCTCGATGACCATGGA-ATCTCAAAATTCCTAACCTCCGCT-TCCACGCCTCGTC 205 ||| ||| | ||| | || | || |||||| ||||||||| | |||| ||| | | Sbjct 137 TTCC-CCTCAACGACGA-AGACGTTTCCAAATTCATAACCTCCG-TAGCCACTCCTAGAC 193 Query 206 CTTACTCGT-TAC-TCGTCTTCTTCGACGCTACTCAACTCCACAGCAAAAACGAGCTTCG 263 ||||||| | | | || ||||||||||||| | ||| |||||| |||| | | |||| || Sbjct 194 CTTACTC-TCT-CATCATCTTCTTCGACGCAATTCATCTCCACGGCAATAGCCAGCTCCG 251 Query 264 TCTTCAAGAGCTCCGTCGCGAATTCGGCA-TCGTCTCCGCTTCATTCCTCG-C--TAACA 319 ||||| |||| |||| ||||||||||| | |||||||||| | ||| ||| | |||| Sbjct 252 TCTTCCAGAGTTCCGCCGCGAATTCGG-ACTCGTCTCCGCCACTTTCATCGCCAACAACA 310 Query 320 ACAATGGATCTGAA-GGAACTAAGCTTTTCTTCTGTGAGATCGAGTTTTCGAAGTCTCAA 378 |||||||| || || |||| ||||| |||||||| |||||||| | | | ||| Sbjct 311 ACAATGGAACT-AACGGAAAAAAGCTCTTCTTCTGCGAGATCGAATCAACTCACTCTGTG 369 Query 379 TCTTCGTTCCAGCTCTTTGGCGTTAACG-CTTTACCTCACA-TTCGTCTTGTAAGTCCT- 435 |||||||||||| ||| | ||| | | | |||| |||| ||| || || || ||| Sbjct 370 GCTTCGTTCCAGCGCTTCGCCGTCGA-GAATCTACCGCACATTTC-CCTCGTTAGCCCTA 427 Query 436 TCGATATCGAATCT-ACGTGATGAATCTGGTCAAATGGATCAATCG-GATTACTCTAGAT 493 | || |||| | || | ||||| | ||||||||| | | | |||| | || ||| Sbjct 428 T-GACGGAGAATTTAAC---A-GAATCAGATCAAATGGA-CGGTGGAGATTTCACTGGAT 481 Query 494 TAGCTGAATCAATGGCTGAGTTTGTTGAGCAACGAACTAAACTCAAGGTCGGTCCTATTC 553 |||| ||||||||||| ||||| || || | ||| ||||||| || ||||| || | Sbjct 482 TAGCCGAATCAATGGCAGAGTTCGTCGAACGTTTAACCAAACTCACTGTTGGTCCAATCC 541 Query 554 AACGTCCACCGCTACTTTCGAA-ACCACAGATCGGTATTATCGTTGCGTTGATCGTTATC 612 |||| || ||||| || ||||| | |||| ||||| || || || || || || | ||| Sbjct 542 AACGACCGCCGCTCCTATCGAAGA-CACAAATCGGAATCATAGTAGCATTTCTCATAATC 600 Query 613 GCTACTCCGTTTATCATCAA-AAGAGTTTTGAAAGGAGAAACTATTCTTCATGATAC-TA 670 | |||||| || | ||||| |||| || | ||||||||||| |||| ||||| | || Sbjct 601 TCGACTCCGATTCTAATCAAGAAGA-TTCTAAAAGGAGAAACGCTTCTCCATGA-CCGTA 658 Query 671 GACTTTGGTTA-TCTGGTGCTATCTTCATTTACTTCTTTAGTGT-TGCTGGTACAATGCA 728 || | |||||| || || || | ||| | |||||||| || || | | || |||||||| Sbjct 659 GAATCTGGTTAGTC-GGCGCGGTTTTCGTCTACTTCTTCAGCGTCT-CGGGGACAATGCA 716 Query 729 CAACATTATCAGGA-AAATGCCGATGTTTCTTC-AAGATCGT-AACGATCCGAATAAGCT 785 |||||||| | || ||||||| |||| | || ||||| | || ||| | |||||| | Sbjct 717 TAACATTATTA-GAGAAATGCCAATGTAT-ATCAAAGATTATGAA-GATTCAAATAAG-T 772 Query 786 TGTGTTTT-TCTA-CCAAGGATCTGGA-ATGCAGCTTGGAGCTGAAGGATTTGC--TGTT 840 | |||||| | || | ||| ||| || |||||||||||||| ||||| ||| | ||| Sbjct 773 T-TGTTTTCTTTATCGAAGAATC-AGAGATGCAGCTTGGAGCAGAAGG-TTT-CTTTGTA 828 Query 841 GGATTCTTGTATACTGTTGTTGGATTGCTTTTGGCGTTTGTTACCAATGTGCTTGTTCGA 900 || || |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 829 GGGTTTTTGTATACTGTTGTTGGATTGCTTTTGGCGTTTGTTACTAATGTGCTTGTTCGA 888 Query 901 GTGAAGAATATTACTGCACA--A-AGGTTGATTATGCTTTTGGCTTTGTTC-ATATCGTT 956 || ||||| | | | | | | | ||| || |||||||||| || ||| | |||||||| Sbjct 889 GTTAAGAA-ACT-C-GAAGAGCAGAGGATGGCTATGCTTTTGTCTCTGT-CGATATCGTT 944 Query 957 CTGGGCTGTGAAGAAAGTTGTTTACTTGGATAACTGGAAGACTGGATATGGAATTCATCC 1016 |||||||||| ||||||||||||||||||||| |||||||||||||||| |||| | || Sbjct 945 TTGGGCTGTGAGGAAAGTTGTTTACTTGGATAATTGGAAGACTGGATATGAAATTTACCC 1004 Query 1017 GTATTGGCCATC 1028 ||||||||||| Sbjct 1005 ATATTGGCCATC 1016 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38732883672 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5