BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61790.1
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924835 jgi|Araly1|924835|scaffold_200396.1 1757 0.0
Ahg334448 jgi|Araly1|334448|fgenesh1_pg.C_scaffold_1001013 431 5e-120
> Ahg924835 jgi|Araly1|924835|scaffold_200396.1
Length=1084
Score = 1757 bits (951), Expect = 0.0
Identities = 1013/1043 (97%), Gaps = 4/1043 (0%)
Strand=Plus/Plus
Query 1 ATGGCGCTCAAATCAAAACTCGTCTCTCTTCTCTTCCTCATAGCAACACTATCATCCACA 60
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 24 ATGGCGGTCAAATCAAAACTCGTCTCTCTTCTCTTCCTCGTAGCAACACTATCATCCGCA 83
Query 61 TTCGCAGCTTCGTTTTCCGATTCGGATTCCGATTCAGATCTTCTCAACGAACTTGTATCT 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 84 TTCGCAGCTTCGTTTTCCGATTCAGATTCCGATTCAGATCTTCTCAACGAACTTGTATCT 143
Query 121 CTCAGATCAACAAGCGAATCAGGCGTAATCCATCTCGATGACCATGGAATCTCAAAATTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 CTCAGATCAACAAGCGAATCAGGCGTAATCCATCTCGATGACCATGGAATCTCAAAATTC 203
Query 181 CTAACCTCCGCTTCCACGCCTCGTCCTTACTCGTTACTCGTCTTCTTCGACGCTACTCAA 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 204 CTAACCTCCGCTTCCACTCCTCGTCCTTACTCGTTACTCGTCTTCTTCGACGCAACTCAG 263
Query 241 CTCCACAGCAAAAACGAGCTTCGTCTTCAAGAGCTCCGTCGCGAATTCGGCATCGTCTCC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 CTCCACAGCAAAAACGAGCTTCGTCTTCAAGAGCTCCGTCGCGAATTCGGCATCGTCTCC 323
Query 301 GCTTCATTCCTCGCTAACAACAATGGATCTGAAGGAACTAAGCTTTTCTTCTGTGAGATC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 324 GCTTCATTCCTCGCTAACAACAATGGATCTGAAGGAACTAAGCTTTTCTTCTGCGAGATC 383
Query 361 GAGTTTTCGA-AGTCTCAATCTTCGTTCCAGCTCTTTGGCGTTAACGCTTTACCTCACAT 419
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 GAGTTTTC-ACAGTCTCAATCTTCGTTCCAGCTCTTTGGCGTTAACGCTTTACCTCACAT 442
Query 420 TCGTCTTGTAAGTCCTTCGATATCGAATCTACGTGATGAATCTGGTCAAATGGATCAATC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 TCGTCTTGTAAGTCCTTCGATATCGAATCTACGTGATGAATCTGGTCAAATGGATCAATC 502
Query 480 GGATTACTCTAGATTAGCTGAATCAATGGCTGAGTTTGTTGAGCAACGAACTAAACTCAA 539
|||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 503 GGATTACTCTAGATTAGCGGAATCAATGGCTGAGTTCGTCGAGCAACGAACTAAACTCAA 562
Query 540 GGTCGGTCCTATTCAACGTCCACCGCTACTTTCGAAACCACAGATCGGTATTATCGTTGC 599
||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 563 GGTCGGTCCTATTCAACGTCCACCGCTTCTTTCGAAACCGCAGATCGGCGTTATCGTTGC 622
Query 600 GTTGATCGTTATCGCTACTCCGTTTATCATCAAAAGAGTTTTGAAAGGAGAAACTATTCT 659
||||||||||||||||||||||||||| |||||| ||||| | |||||||||||||||||
Sbjct 623 GTTGATCGTTATCGCTACTCCGTTTATTATCAAACGAGTTCTAAAAGGAGAAACTATTCT 682
Query 660 TCATGATACTAGACTTTGGTTATCTGGTGCTATCTTCATTTACTTCTTTAGTGTTGCTGG 719
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 683 TCATGATAGTAGACTTTGGTTATCTGGTGCTATCTTCATTTACTTCTTTAGCGTTGCTGG 742
Query 720 TACAATGCACAACATTATCAGGAAAATGCCGATGTTTCTTCAAGATCGTAACGATCCGAA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 TACAATGCACAACATTATCAGGAAAATGCCGATGTTTCTTCAAGATCGTAACGATCCGAA 802
Query 780 TAAGCTTGTGTT-TTTCTACCAAGGATCTGGAATGCAGCTTGGAGCTGAAGGATTTGCTG 838
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 TAAGCTTGTGTTCTTT-TACCAAGGATCTGGAATGCAGCTTGGAGCTGAAGGATTTGCTG 861
Query 839 TTGGATTCTTGTATACTGTTGTTGGATTGCTTTTGGCGTTTGTTACCAATGTGCTTGTTC 898
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 TTGGATTCTTGTATACCGTTGTTGGATTGCTTTTGGCGTTTGTTACCAATGTGCTTGTTC 921
Query 899 GAGTGAAGAATATTACTGCACAAAGGTTGATTATGCTTTTGGCTTTGTTCATATCGTTCT 958
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 922 GAGTGAAGAATCTTACTGCACAAAGATTGATTATGCTTTTGGCTTTGTTCATATCGTTCT 981
Query 959 GGGCTGTGAAGAAAGTTGTTTACTTGGATAACTGGAAGACTGGATATGGAATTCATCCGT 1018
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 982 GGGCTGTGAAGAAAGTTGTTTACTTGGATAATTGGAAGACTGGATACGGAATTCATCCGT 1041
Query 1019 ATTGGCCATCGAGTTGGCGTTGA 1041
|||||||||||||||||||||||
Sbjct 1042 ATTGGCCATCGAGTTGGCGTTGA 1064
> Ahg334448 jgi|Araly1|334448|fgenesh1_pg.C_scaffold_1001013
Length=1410
Score = 431 bits (233), Expect = 5e-120
Identities = 737/972 (76%), Gaps = 68/972 (7%)
Strand=Plus/Plus
Query 91 GATTCAGATCTTC-TCAACGAACTTGTATCTCTCAGATCAACAAG-CGAATCAGGCGT-A 147
|||||||||| || | ||||| ||||| || ||| ||||| | | ||||||||| | |
Sbjct 79 GATTCAGATC-TCATAAACGAGCTTGTTTCGCTCCGATCAGC-CGCCGAATCAGGTTTGA 136
Query 148 ATCCATCTCGATGACCATGGA-ATCTCAAAATTCCTAACCTCCGCT-TCCACGCCTCGTC 205
||| ||| | ||| | || | || |||||| ||||||||| | |||| ||| | |
Sbjct 137 TTCC-CCTCAACGACGA-AGACGTTTCCAAATTCATAACCTCCG-TAGCCACTCCTAGAC 193
Query 206 CTTACTCGT-TAC-TCGTCTTCTTCGACGCTACTCAACTCCACAGCAAAAACGAGCTTCG 263
||||||| | | | || ||||||||||||| | ||| |||||| |||| | | |||| ||
Sbjct 194 CTTACTC-TCT-CATCATCTTCTTCGACGCAATTCATCTCCACGGCAATAGCCAGCTCCG 251
Query 264 TCTTCAAGAGCTCCGTCGCGAATTCGGCA-TCGTCTCCGCTTCATTCCTCG-C--TAACA 319
||||| |||| |||| ||||||||||| | |||||||||| | ||| ||| | ||||
Sbjct 252 TCTTCCAGAGTTCCGCCGCGAATTCGG-ACTCGTCTCCGCCACTTTCATCGCCAACAACA 310
Query 320 ACAATGGATCTGAA-GGAACTAAGCTTTTCTTCTGTGAGATCGAGTTTTCGAAGTCTCAA 378
|||||||| || || |||| ||||| |||||||| |||||||| | | | |||
Sbjct 311 ACAATGGAACT-AACGGAAAAAAGCTCTTCTTCTGCGAGATCGAATCAACTCACTCTGTG 369
Query 379 TCTTCGTTCCAGCTCTTTGGCGTTAACG-CTTTACCTCACA-TTCGTCTTGTAAGTCCT- 435
|||||||||||| ||| | ||| | | | |||| |||| ||| || || || |||
Sbjct 370 GCTTCGTTCCAGCGCTTCGCCGTCGA-GAATCTACCGCACATTTC-CCTCGTTAGCCCTA 427
Query 436 TCGATATCGAATCT-ACGTGATGAATCTGGTCAAATGGATCAATCG-GATTACTCTAGAT 493
| || |||| | || | ||||| | ||||||||| | | | |||| | || |||
Sbjct 428 T-GACGGAGAATTTAAC---A-GAATCAGATCAAATGGA-CGGTGGAGATTTCACTGGAT 481
Query 494 TAGCTGAATCAATGGCTGAGTTTGTTGAGCAACGAACTAAACTCAAGGTCGGTCCTATTC 553
|||| ||||||||||| ||||| || || | ||| ||||||| || ||||| || |
Sbjct 482 TAGCCGAATCAATGGCAGAGTTCGTCGAACGTTTAACCAAACTCACTGTTGGTCCAATCC 541
Query 554 AACGTCCACCGCTACTTTCGAA-ACCACAGATCGGTATTATCGTTGCGTTGATCGTTATC 612
|||| || ||||| || ||||| | |||| ||||| || || || || || || | |||
Sbjct 542 AACGACCGCCGCTCCTATCGAAGA-CACAAATCGGAATCATAGTAGCATTTCTCATAATC 600
Query 613 GCTACTCCGTTTATCATCAA-AAGAGTTTTGAAAGGAGAAACTATTCTTCATGATAC-TA 670
| |||||| || | ||||| |||| || | ||||||||||| |||| ||||| | ||
Sbjct 601 TCGACTCCGATTCTAATCAAGAAGA-TTCTAAAAGGAGAAACGCTTCTCCATGA-CCGTA 658
Query 671 GACTTTGGTTA-TCTGGTGCTATCTTCATTTACTTCTTTAGTGT-TGCTGGTACAATGCA 728
|| | |||||| || || || | ||| | |||||||| || || | | || ||||||||
Sbjct 659 GAATCTGGTTAGTC-GGCGCGGTTTTCGTCTACTTCTTCAGCGTCT-CGGGGACAATGCA 716
Query 729 CAACATTATCAGGA-AAATGCCGATGTTTCTTC-AAGATCGT-AACGATCCGAATAAGCT 785
|||||||| | || ||||||| |||| | || ||||| | || ||| | |||||| |
Sbjct 717 TAACATTATTA-GAGAAATGCCAATGTAT-ATCAAAGATTATGAA-GATTCAAATAAG-T 772
Query 786 TGTGTTTT-TCTA-CCAAGGATCTGGA-ATGCAGCTTGGAGCTGAAGGATTTGC--TGTT 840
| |||||| | || | ||| ||| || |||||||||||||| ||||| ||| | |||
Sbjct 773 T-TGTTTTCTTTATCGAAGAATC-AGAGATGCAGCTTGGAGCAGAAGG-TTT-CTTTGTA 828
Query 841 GGATTCTTGTATACTGTTGTTGGATTGCTTTTGGCGTTTGTTACCAATGTGCTTGTTCGA 900
|| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 829 GGGTTTTTGTATACTGTTGTTGGATTGCTTTTGGCGTTTGTTACTAATGTGCTTGTTCGA 888
Query 901 GTGAAGAATATTACTGCACA--A-AGGTTGATTATGCTTTTGGCTTTGTTC-ATATCGTT 956
|| ||||| | | | | | | | ||| || |||||||||| || ||| | ||||||||
Sbjct 889 GTTAAGAA-ACT-C-GAAGAGCAGAGGATGGCTATGCTTTTGTCTCTGT-CGATATCGTT 944
Query 957 CTGGGCTGTGAAGAAAGTTGTTTACTTGGATAACTGGAAGACTGGATATGGAATTCATCC 1016
|||||||||| ||||||||||||||||||||| |||||||||||||||| |||| | ||
Sbjct 945 TTGGGCTGTGAGGAAAGTTGTTTACTTGGATAATTGGAAGACTGGATATGAAATTTACCC 1004
Query 1017 GTATTGGCCATC 1028
|||||||||||
Sbjct 1005 ATATTGGCCATC 1016
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38732883672
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5