BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G61795.1

Length=901
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg924834 jgi|Araly1|924834|scaffold_200395.1                        689    0.0  


> Ahg924834 jgi|Araly1|924834|scaffold_200395.1
Length=428

 Score =  689 bits (373),  Expect = 0.0
 Identities = 399/412 (97%), Gaps = 0/412 (0%)
 Strand=Plus/Plus

Query  306  TTGAGCATGGCTACAAGATTCAAGGGGCTTTATAACAAGAGCTTCAAATGTTTCTCCGAC  365
            ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct  15   TTGAGCATGGCTACAAGATTCAAAGGGATTTATAACAAGAGCTTCAAATGTTTCTCCGAC  74

Query  366  ATTTTTGATGTGGAGGAGGAGGAGGAGATGGAAATTGGTTATCCGACCGATGTTCGACAC  425
            ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct  75   ATTTTTGATGTGGAGGAGGAGGAAGAGATGGAAATCGGTTATCCGACTGATGTTCGACAC  134

Query  426  GTGTCACATATCGGTTGGGATAGTTCATCAAGTAGTGCACCTAGTTGGCTACATGAATTC  485
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  135  GTGTCACATATCGGTTGGGATAGTTCATCGAGTAGTGCACCTAGTTGGCTACATGAATTC  194

Query  486  AAGACGAGCAACAATGTTTTAGAGCCAAACTCATCGTGGCCATTTCAAGATTTGAAGTCA  545
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  195  AAGACGAGCAACAATGTTTTAGAGCCAAACTCATCGTGGCCATTTCAAGATTTGAAATCA  254

Query  546  GCGATGGAGGCATTTGGAGAAGTTGAAAGCAGCAAAGAAATGGAAAGAGAATCAACTAAA  605
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  255  GCGATGGAGGCATTTGGAGAAGTTGAAAGCAGCAAAGAAATGGAAAGAGAATCAACAAAA  314

Query  606  CAAAATCTGAAGAAGAAACTCTCTTCAAAAGCTTCTCTATTGTGTAATTCATGGTCACCA  665
            ||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct  315  CAAAACCTGAAGAAGAAACTCTCTTTAAAAGCTTCTCTATTGTGTAATACATGGTCACCA  374

Query  666  AGATTCTCAAGATCAAGCAAGGTCCTGGCTTAATTATTTTTCATTTTAATTT  717
            |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct  375  AGATTCTCAAGATCAAGCAAGGTCCTTGCTTAATTATTTTTTATTTTAATTT  426



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33395675292


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5