BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61800.1
Length=1569
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475149 jgi|Araly1|475149|fgenesh2_kg.2__279__AT1G61800.1 1947 0.0
> Ahg475149 jgi|Araly1|475149|fgenesh2_kg.2__279__AT1G61800.1
Length=1310
Score = 1947 bits (1054), Expect = 0.0
Identities = 1245/1333 (93%), Gaps = 29/1333 (2%)
Strand=Plus/Plus
Query 84 CACAATGCTTTCTTCAATCAAACCATCTTCGTCTTCCTTCTCCACCGCTATCTCCGGCA- 142
||||||| | ||||||||||||||| |||| || ||| | |||| ||| |||||||| |
Sbjct 1 CACAATGATCTCTTCAATCAAACCAGCTTCATCGTCCATGTCCATCGCCATCTCCGG-AG 59
Query 143 GCGTAAGGCGGTCAATTCCTACAAAGCTCAAGTTTTCTCCTTT-ACTCATCATCAAAAAC 201
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 60 GCGTAAGGCGGTCAATTCCTACAAAGCTCAAGTTTTCTCCTTTAAC-CATCATCAAAAAC 118
Query 202 TGCCATAACCAAAGCTTTAACGCTAATGTTGTCTCCCATCAAAAGCCTCTACACATTTCA 261
||||||||||||||||||||| | | | |||||| ||||||||||||||||||||| ||
Sbjct 119 TGCCATAACCAAAGCTTTAACTC-CA-G-TGTCTCGCATCAAAAGCCTCTACACATTACA 175
Query 262 TCTGCTTCGAATTTCAAGC---GTGAGGTCAAAGTCGAAGCTTACGAGGCCGATCGTTCC 318
||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| ||
Sbjct 176 TCTACTTCGAATTTCAAGCGTGGTGAGGTCAAAGTCGAAGCTTACGAGGCAGATCGATCT 235
Query 319 CGTCCACTGGACATCAACATCGAGCTTCCCGATGAACAATCCGCGCAGAAACTGAAAATC 378
|||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 236 CGTCCACTCGACATTAACATCGAGCTTCCCGACGAACAATCCGCGCAGAAACTGAAAATC 295
Query 379 GGAATCTACTTCGCAACTTGGTGGGCACTTAACGTTGTCTTCAACATCTACAACAAGAAA 438
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 296 GGAATCTATTTCGCGACTTGGTGGGCACTTAACGTTGTTTTCAACATCTACAACAAGAAA 355
Query 439 GTCCTCAATGCTTTTCCTTACCCGTGGCTTACTTCGACGTTGTCTCTCGCTTGTGGTTCT 498
|||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 356 GTCCTCAACGCTTTTCCTTATCCGTGGCTTACTTCGACGTTGTCTCTTGCTTGTGGTTCT 415
Query 499 TTGATGATGCTTGTCTCTTGGGCTACTAGAATCGCAGATGCTCCTAAAACTGATCTCGAG 558
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 416 CTGATGATGCTTGTCTCTTGGGCTACTAGAATCGCAGATGCTCCTAAAACTGATATCGAT 475
Query 559 TTCTGGAAAACTCTGTTCCCGGTCGCTGTAGCACACACGATAGGACACGTTGCAGCAACA 618
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 476 TTCTGGAAAACTCTGTTCCCGGTCGCTTTAGCACACACGATAGGACACGTTGCAGCAACA 535
Query 619 GTGAGTATGTCAAAAGTAGCAGTTTCCTTCACACACATCATTAAAAGTGGTGAACCAGCT 678
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 536 GTGAGTATGTCAAAAGTAGCAGTTTCCTTCACACACATCATCAAAAGTGGTGAACCAGCG 595
Query 679 TTCAGTGTCTTAGTCTCAAGATTCTTCATGGGAGAGACTTTCCCTCTTCCTGTCTATCTC 738
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TTCAGTGTCTTGGTCTCAAGATTCTTCATGGGAGAGACTTTCCCTCTTCCTGTCTATCTC 655
Query 739 TCTCTCTTACCAATCATCGGAGGCTGCGCTCTCGCGGCCATCACCGAGCTTAACTTCAAC 798
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 656 TCTCTCTTACCAATCATCGGAGGCTGCGCTCTCGCCGCCATCACAGAGCTTAACTTCAAC 715
Query 799 ATCACTGGGTTTATGGGGGCAATGATATCGAATTTGGCATTTGTGTTCCGGAATATCTTT 858
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 716 ATCACTGGGTTTATGGGGGCAATGATATCGAATTTGGCATTTGTGTTTCGGAATATATTT 775
Query 859 TCGAAGAAAGGGATGAAAGGGAAGTCAGTGAGCGGAATGAACTACTACGCTTGCTTATCG 918
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 776 TCGAAGAAAGGGATGAAAGGGAATTCAGTTAGCGGGATGAACTACTACGCTTGCTTATCG 835
Query 919 ATGATGTCTCTTGTGATCCTCACTCCATTTTCTATTGCCGTGGAAGGTCCTCAAATGTGG 978
|||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||
Sbjct 836 ATGATGTCTCTTGTGATCCTCACTCCATTTGCTATTGCTGTCGAAGGTCCTCAAATGTGG 895
Query 979 GCTGCTGGTTGGCAAAATGCGGTTTCTCAAGTCGGACCAAACTTTGTCTGGTGGGTAGTG 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GCTGCTGGTTGGCAAAATGCGGTTTCTCAAGTCGGACCAAACTTTGTCTGGTGGGTAGTG 955
Query 1039 GCACAAAGTGTGTTTTACCATTTGTACAATCAGGTCTCATACATGTCATTAGACCAGATT 1098
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 956 GCACAGAGTGTGTTTTACCATTTGTACAATCAGGTCTCATACATGTCGTTAGACCAGATT 1015
Query 1099 TCGCCGTTAACTTTCAGTATCGGTAATACGATGAAGCGGATTTCCGTTATTGTTGCATCG 1158
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1016 TCGCCGTTGACTTTCAGTATCGGTAATACGATGAAGCGGATTTCCGTAATTGTTGCATCG 1075
Query 1159 ATCATCATTTTCCATACCCCGATTCAACCGGTTAATGCCCTCGGTGCTGCCATTGCGATT 1218
||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1076 ATCATCATTTTTCATACCCCGATTCAACCAGTTAATGCACTCGGTGCTGCCATTGCGATT 1135
Query 1219 TTTGGAACTTTCCTCTACTCACAGGCGAAGCAGTGAGGATGGTTTAGGAGGCAGTTTTTT 1278
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1136 CTTGGAACTTTCCTCTACTCACAGGCGAAGCAGTGAGGATGGTTTAAGAGGCAGTTTTTT 1195
Query 1279 GGGTTTGTTTTGCAAAAGAAAATGAAAACTAACAAAAG-AGTAGCCGGGGAGGAGAGAAC 1337
||||| |||| | || | || || || |||||| || |||||||||||
Sbjct 1196 GGGTT--------AAAAC----T-AA--C-AA-AAGAGTAGTAGCTGGAGAGGAGAGAAC 1238
Query 1338 ATTCCGGTGAGATCAACATCGGAAAATGCTTTTCCCCGGTCCATGGATATGAAGAAACTG 1397
||||||||||||||||||||||||| || ||||||| |||| ||||||||||||||||||
Sbjct 1239 ATTCCGGTGAGATCAACATCGGAAAGTGTTTTTCCC-GGTCAATGGATATGAAGAAACTG 1297
Query 1398 GAGCTTGAAGTTG 1410
|||||||||||||
Sbjct 1298 GAGCTTGAAGTTG 1310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58773248035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5