BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61810.3
Length=1696
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475148 jgi|Araly1|475148|fgenesh2_kg.2__278__AT1G61810.1 1493 0.0
Ahg475147 jgi|Araly1|475147|fgenesh2_kg.2__277__AT1G61820.1 1362 0.0
> Ahg475148 jgi|Araly1|475148|fgenesh2_kg.2__278__AT1G61810.1
Length=1685
Score = 1493 bits (808), Expect = 0.0
Identities = 899/943 (95%), Gaps = 6/943 (1%)
Strand=Plus/Plus
Query 564 GCCGATATATGTTTCAAGCATTTTGGAAACCGAGTTAAATACTGGACCACGCTTAACGAA 623
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 GCCAATATATGTTTCAAGCATTTTGGAAACCGAGTTAAATACTGGACCACGCTTAACGAA 594
Query 624 CCAAATCAACAATTAATCTTAGGCTATCTAACAGGTAAATTTCCACCCTCTCGTTGCTCC 683
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 595 CCAAATCAACAATTAATCTTAGGCTATCTAACAGGTAAATTTCCACCGTCTCGTTGTTCC 654
Query 684 TCGCCATACGGGAACTGTAGCCAGGGGAA-TTCAGAAACCGAACCTTTCATAGCCGCACA 742
||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||| | ||
Sbjct 655 TCGCCATACGGGAACTGTAGCCA-GGGAAGTTCCGAAACCGAACCTTTCATAGCCACGCA 713
Query 743 TAACATGATCCTTGCACACGCAAAAGCGGTTAACATATACAAGACCAAATATCAGAAAGA 802
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 714 TAACATGATCCTTGCACACGCAAAAGCGGTTAACATATACCAGACCAAATATCAGAAAGA 773
Query 803 ACAAAAGGGAAGCATTGGCATTGTGGTACAAACATCATGGTTTGAACCCATTAGTGATTC 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 774 ACAAAAGGGAAGCATTGGCATTGTGGTACAAACATCATGGTTTGAACCCATTAGTGAATC 833
Query 863 CAATGCGGATAAAGAAGCTGCTGAGAGAGCTCAATCATTTTACTCTAATTGGATTCTAGA 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 834 CAATGCGGATAAAGAAGCTGCTGAGAGAGCTCAATCATTTTACTCTAATTGGATTCTCGA 893
Query 923 TCCCGTTATATATGGGAAATATCCAAAAGAAATGGTAGATATTCTTGGACCAGCCTTGCC 982
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 894 TCCCGTTATATATGGGAAATACCCAAAAGAAATGGTAAATATTCTTGGACCAGCCTTGCC 953
Query 983 ACAATTTTCGAGCAATGAAGTGAAGAACTTAGAGAAGTCGAGGGCAGATTTCGTTGGTAT 1042
||||||||||||||||||||||||||||||||||| ||||| ||||||||| | |||||
Sbjct 954 GCAATTTTCGAGCAATGAAGTGAAGAACTTAGAGAACTCGAGAGCAGATTTCATCGGTAT 1013
Query 1043 TAATCACTATACAAGTTACTTCATTCAAGATTGTTTGACCTCTGCTTGTAATACTGGACA 1102
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1014 TAATCACTATACAAGTTACTTCATTCAAGATTGTTTGACCTCTGCTTGTAATACCGGACA 1073
Query 1103 TGGAGCTTTTAAGGCCGAAGGATATGCTC-TCAAGTTAGACCGGAAAGGCAATGTTACTA 1161
||||||||||||||||||||||| ||| | | || |||||||| |||||||||||| |||
Sbjct 1074 TGGAGCTTTTAAGGCCGAAGGATTTGCCCAT-AAATTAGACCGTAAAGGCAATGTTTCTA 1132
Query 1162 TAGGAGAACTTACCGATGTAAATTGGCAGCATATTGATCCCA-CAGGATTCCACAAGATG 1220
| |||||||||||||||||| ||||||||||||||||| | | |||||| |||||||||
Sbjct 1133 TTGGAGAACTTACCGATGTAGATTGGCAGCATATTGAT-CTAGAAGGATTTCACAAGATG 1191
Query 1221 CTGAATTATTTAAAAGATAGGTACCCAAACATGCCAATGTTCATAACTGAAAACGGTTTT 1280
|||||||||||||||||||||||||||||||| | || |||||||| ||||||||||||
Sbjct 1192 CTGAATTATTTAAAAGATAGGTACCCAAACATACGGATTTTCATAACCGAAAACGGTTTT 1251
Query 1281 GGAGACTTGCAAAAACCTGAAACAACGGATAAAGAACTTCTAAATGATACAAAAAGGATC 1340
|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1252 GGAGACTTGCAAAAACCTGAAACAACAGATAAAGAACTTCTACATGATACAAAAAGGATT 1311
Query 1341 CAATACATGAGTGGATACTTAGAAGCTTTACAAGCAGCAATGAGGGATGGAGCAAATGTG 1400
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1312 CAATACATGAGTGGATACTTAGAAGCTCTACAAGCAGCAATGAGGGATGGAGCAAATGTG 1371
Query 1401 AAGGGTTATTTTGTGTGGTCACTATTAGACAATTTTGAGTGGTTGTTCGGATACAAGGTT 1460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 AAGGGTTATTTTGTGTGGTCACTATTAGACAATTTTGAGTGGTTGTTCGGATACAAGGTT 1431
Query 1461 CGGTTTGGTCTATTCCATGTGGATCTAACAACTCTTAAAAGAA 1503
|||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1432 CGGTTTGGTCTATTCCATGTGGATCTGACAACACTTAAAAGAA 1474
Score = 307 bits (166), Expect = 2e-82
Identities = 176/181 (97%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 305 GGAGGACATCCAATTAATGTCTTTTCTTGGAGTGAACAGTTATAGGTTTTCAATTTCTTG 364
||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||
Sbjct 327 GGAGGACATCCAATTAATGACTTTCCTTGGAGTGATCAGTTATAGGTTTTCAATTTCTTG 386
Query 365 GTGTAGAATCTTACCTAGAGGAAGATTTGGAGAGATTAATTATTTGGGGATAAAGTATTA 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 GTGTAGAATCTTACCTAGAGGAAGATTTGGAGAGATTAATTATTTGGGGATAAAGTATTA 446
Query 425 CAACATATTTATCGATGCTCTCATTAGTAGAGGGATTAAACCATTTGTGACGTTGAACCA 484
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 CAACAAATTGATCGATGCTCTCATTAGTAGAGGGATTAAACCATTTGTGACGTTGAACCA 506
Query 485 T 485
|
Sbjct 507 T 507
> Ahg475147 jgi|Araly1|475147|fgenesh2_kg.2__277__AT1G61820.1
Length=1911
Score = 1362 bits (737), Expect = 0.0
Identities = 1195/1411 (85%), Gaps = 52/1411 (4%)
Strand=Plus/Plus
Query 120 GATTCATCTCCATTTCCTTCTGATTTCCTCTTTGGTACAGCTTCTTCCGCTTACCAGTAT 179
|||||||||| |||||||||||||||| ||||||| ||||||||||| |||| |||||||
Sbjct 381 GATTCATCTCTATTTCCTTCTGATTTCTTCTTTGGCACAGCTTCTTCTGCTTTCCAGTAT 440
Query 180 GAAGGTGCGTTCTTGACTGATGGAAAAAGTTTGAACAATTGGGATGTCTTTACGCATAAA 239
|||||||| ||||| || ||||||||| || |||||||||||||||||||| | ||| ||
Sbjct 441 GAAGGTGCCTTCTTAACCGATGGAAAAGGTCTGAACAATTGGGATGTCTTTGCCCATGAA 500
Query 240 AATCCTGGGAAAATACTTGACAAGAACAATGCAGATAGAGCTGTGGACCAATATAATCGA 299
|| |||||||||||| |||| || ||||| ||| | ||| ||| |||||| |||||
Sbjct 501 AACCCTGGGAAAATAGTTGATGGGAGCAATGGAGACATAGCCACGGATCAATATCATCGA 560
Query 300 TTTTTGGAGGACATCCAATTAATGTCTTTTCTTGGAGTGAACAGTTATAGGTTTTCAATT 359
| | |||| || ||||||| |||||||||||||||||| |||||||| || || ||||||
Sbjct 561 TATATGGAAGATATCCAATCAATGTCTTTTCTTGGAGTCAACAGTTACAGATTATCAATT 620
Query 360 TCTTGGTGTAGAATCTTACCTAGA-GGAAGATTTGGAGAG-ATTAATTATTTGGGGATAA 417
||||||| |||| ||||||||| | ||||||||||||| | ||||||||| ||| ||||
Sbjct 621 TCTTGGTCTAGAGTCTTACCTA-ATGGAAGATTTGGAG-GTATTAATTATAAGGGAATAA 678
Query 418 AGTATTACAACATATTT-ATCGATGCTCTCATTAGTAGAGGGATTAAACCATTTGTGACG 476
|||||||||||| |||| ||||| ||||||||||| | |||||||| |||||||||||||
Sbjct 679 AGTATTACAACA-ATTTGATCGACGCTCTCATTAGAAAAGGGATTACACCATTTGTGACG 737
Query 477 TTGAACCATGTCGACTATCCTCAAGAACTCGAGGACCGGTTTC-AAAGTTGGTTAAACCC 535
||||||||| ||||||||||||||||||||||| ||||| ||| |||||||||||| | |
Sbjct 738 TTGAACCATTTCGACTATCCTCAAGAACTCGAGAACCGG-TTCAAAAGTTGGTTAAGCTC 796
Query 536 CGAGATGCAGAAG-GAATTT-GGTTATTTAGCCGATATATGTTTCAAGCATTTTGGAAAC 593
|||||||||| || | |||| || || ||||| |||||||||||||| ||||||||| ||
Sbjct 797 CGAGATGCAG-AGTG-ATTTCGGGTACTTAGCTGATATATGTTTCAAACATTTTGGAGAC 854
Query 594 CGAGTTAAATACTGGACCACGCTTAACGAACCAAATCAACAATTAATCTTAGGCTATCTA 653
||||||||| |||||| |||| ||||||||||||| |||||| ||||||||| ||| | |
Sbjct 855 CGAGTTAAACACTGGATCACGATTAACGAACCAAACCAACAAATAATCTTAGCCTACCGA 914
Query 654 ACAGGTAAATTTCCACCCTCTCGTTGCTCC-TCGCCATACGGGAACTGTAGC-CAGGGGA 711
| ||| ||||||||| || || |||||| | ||||||||| || |||| | |||||||
Sbjct 915 AGTGGTTTATTTCCACCATCCCGGTGCTCCAT-GCCATACGGAAATTGTA-CTCAGGGGA 972
Query 712 ATTCAGAAACCGAACC-TTTCATAGCCGCACATAACATGATCCTTGCACACGCAAAAGCG 770
| || ||||| || || ||| |||||||| ||||| |||||||| ||||| ||||| |||
Sbjct 973 ACTCGGAAACTGAGCCGTTT-ATAGCCGCTCATAATATGATCCTCGCACATGCAAAGGCG 1031
Query 771 GTT-AACATATA-CAAGACCAAATATCAGAAAGAACAAAAGGGAAGCATTGGCATTGTGG 828
|| || ||||| | | ||||||||||| |||||||||| ||||| ||||||||||||||
Sbjct 1032 ATTCAA-ATATACCGA-ACCAAATATCAAAAAGAACAAAGGGGAATCATTGGCATTGTGG 1089
Query 829 TACAAACATCATGGTTTGAACCCATTAGTGATTCCAATGCGGATAAAGAA-GCTGCTGAG 887
||||||||||||||||||||||||| || ||||| | || ||||||| || ||||| |||
Sbjct 1090 TACAAACATCATGGTTTGAACCCATAAGCGATTCGATTGTGGATAAA-AATGCTGCCGAG 1148
Query 888 AGAGCTCAATCATTTTACTCTAATTGGATTCTAGATCCCGTTATATATGGGAAATATCCA 947
||||||||||||||||| || ||||||||||||||||||||| |||||||||| |||||
Sbjct 1149 AGAGCTCAATCATTTTATTCAAATTGGATTCTAGATCCCGTTGTATATGGGAAGTATCCG 1208
Query 948 AAAGAAATGGTAGATATTCTTGGACCAGCCTTGCCACA-ATTTTCGAGCAATGAAGTGAA 1006
||||||||||| |||| |||||| |||| |||||| | ||||||||| |||||| ||||
Sbjct 1209 GAAGAAATGGTAAATATACTTGGATCAGCTTTGCCA-AGATTTTCGAGTAATGAAATGAA 1267
Query 1007 GAACTTAGAGAAGT-CGAGGGCAGA-TTTCGTTGG-TATTAATCACTATACAAGTTACTT 1063
| | || |||| | | | |||| ||| |||| |||||||||||| |||||||||||
Sbjct 1268 TAGCATAAAGAATTACAAAT-CAGACTTT--TTGGGTATTAATCACTACACAAGTTACTT 1324
Query 1064 CATTCAAGATTGTTTGACCTCTGCTTGTAATACTGGA-C---A--TGGAGCTTTTAAG-G 1116
||| ||||||||||||| | ||||||||||| ||||| | | |||||||| ||| |
Sbjct 1325 CATCCAAGATTGTTTGATCACTGCTTGTAATTCTGGATCTGGAGATGGAGCTTCTAAAAG 1384
Query 1117 CCGAAGGATAT-GCTCTCAAGTTAGACCGGAAAGGCAATGTTACTATAGGAGAACTTACC 1175
| ||||||| | || ||||| ||||||||||||||||||||| | || || ||||||||
Sbjct 1385 C-GAAGGAT-TCGCCCTCAAATTAGACCGGAAAGGCAATGTTTCAATCGGTGAACTTACT 1442
Query 1176 GATGTAAATTGGCAGCATATTGATCCCA-CAGGATTCCACAAGATGCTGAATTAT-TTAA 1233
|| || |||||||||||||||||||| | | || ||| | |||||| | ||||| ||||
Sbjct 1443 GACGTCAATTGGCAGCATATTGATCCTAAC-GGTTTCAAGAAGATGTTAAATTACCTTAA 1501
Query 1234 AAGATAGGTACC-CAAACATGCCAATGTTCATAACTGAAAACGGTTTTGGAGACTTGCAA 1292
|| ||||||||| ||| ||||||||||||||| || ||||| ||||| ||| ||||||||
Sbjct 1502 AA-ATAGGTACCACAA-CATGCCAATGTTCATCACAGAAAATGGTTTCGGAAACTTGCAA 1559
Query 1293 AAACCTGAAACAACGGATAAAGAACTTCTAAATGATACAAAAAGGATCCAATACATGAGT 1352
||||| || || |||| |||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1560 AAACCCGAGACGACGGTTAAAGAACTTCTGGATGATACAAAAAGGATACAATACATGAGT 1619
Query 1353 GGATACTTAGAAGCTTT-ACAAGCAGCAATGAGGGATGGAGCAAATGTGAAGGGTTATTT 1411
||||| || || ||||| | ||| |||||||||||||||||||||||||||||| |||||
Sbjct 1620 GGATATTTGGATGCTTTGA-AAGAAGCAATGAGGGATGGAGCAAATGTGAAGGGATATTT 1678
Query 1412 TGTGTGGTCACTATTAGACAATTTTGAGTGGTTGTTCGGATACAAGGTTCGGTTTGGTCT 1471
| |||||||||||||| ||||| || ||||||| |||||||||| |||| |||||| |
Sbjct 1679 CGCATGGTCACTATTAGATAATTTCGAATGGTTGTACGGATACAAGCTTCGATTTGGTTT 1738
Query 1472 ATTCCATGTGGATCTA-ACAACTCTTAAAAG 1501
|||||| || ||| || |||||||| |||||
Sbjct 1739 ATTCCACGTTGAT-TATACAACTCTGAAAAG 1768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63610709150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5