BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G61830.1

Length=1869
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg924827 jgi|Araly1|924827|scaffold_200388.1                        510    1e-143


> Ahg924827 jgi|Araly1|924827|scaffold_200388.1
Length=524

 Score =  510 bits (276),  Expect = 1e-143
 Identities = 395/449 (88%), Gaps = 21/449 (5%)
 Strand=Plus/Plus

Query  1    ATGGATAATGACCGTGGAATATTTCATATGATGGAGAAAGATGGTAAATTATCCTTGGTA  60
            |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  22   ATGGATAATGATTGTGGAATATTTCATATGATGGAGAAAGATGGTAAATTATCCTTGGTA  81

Query  61   TATCGCCCTCCCATAATACAAACTCGAAGTCCAACCTCCT-CCGGTAGAAT-AGTAAGTA  118
            ||||||| |||||||  ||||||||||||||||||||| | ||||| |||  ||  ||||
Sbjct  82   TATCGCCATCCCATACCACAAACTCGAAGTCCAACCTC-TGCCGGT-GAAACAGCCAGTA  139

Query  119  GCGATAATTCCCTTCTTCAACCtttttttCTTATGCCCTATAGTACGATGGAAAAATAGA  178
            ||||| || ||||||||||||||||||| |||||| |||| |  || ||||||||| |||
Sbjct  140  GCGATGATACCCTTCTTCAACCTTTTTT-CTTATGTCCTAGAACACAATGGAAAAA-AGA  197

Query  179  GACTTTCCG-TATACCATAAGA--TTTTCTTCAATTACCAATGTCCCATTCGGTTCTATC  235
              ||||||  | |||||||| |  |||| ||||||| |||||||||||||| ||||||| 
Sbjct  198  --CTTTCCACT-TACCATAA-ACCTTTT-TTCAATTCCCAATGTCCCATTCCGTTCTATG  252

Query  236  ATAAATTACGTCAGAATTAA-ATATG-CTCATGATGATCATTTTGTACTCCCTTTGTTTT  293
            |||| |||| || |  ||   ||||| | | |||||||||||  ||||||||||||||||
Sbjct  253  ATAAGTTACATC-GTTTTTTTATATGACGC-TGATGATCATTCAGTACTCCCTTTGTTTT  310

Query  294  GGTGCAACGATAAAGAATTTGATGTCAATGGTGGATGCAGTGCATGCAATGGCTCATATT  353
            |||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct  311  GGTGCAACAATAAAGAATTTGATGTCAATGGTGGATGTAGTGCATGCGATGGCTCATATT  370

Query  354  TTGGCACTGATTATTATTTCTGT-A--ACTGTAATAAAATGTATCACAAAGAATGTGTCG  410
            |||| |||||||||||||||||| |  |||||||| ||||||||||||||||||||||||
Sbjct  371  TTGGTACTGATTATTATTTCTGTGATTACTGTAATCAAATGTATCACAAAGAATGTGTCG  430

Query  411  AGTCTCCACTTAAAATAAAACACCCTTAC  439
            |||||||||||||||||||||||||||||
Sbjct  431  AGTCTCCACTTAAAATAAAACACCCTTAC  459



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 70200321535


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5