BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G61860.1 Length=1392 Score E Sequences producing significant alignments: (Bits) Value Ahg475144 jgi|Araly1|475144|fgenesh2_kg.2__274__AT1G61860.1 1869 0.0 > Ahg475144 jgi|Araly1|475144|fgenesh2_kg.2__274__AT1G61860.1 Length=1337 Score = 1869 bits (1012), Expect = 0.0 Identities = 1131/1189 (95%), Gaps = 6/1189 (1%) Strand=Plus/Plus Query 1 ATGATGAAGCTTTGTCCTTGTTTCATCAACCCGCATCAGCTTGGACCTAATTCGCCTAGA 60 ||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| Sbjct 1 ATGATGAAGCTTTGTCCTTGTTTCATCAACCCGCAACAACTCGGACCTAATTCGCCTAGA 60 Query 61 GATTCATTTGACGAAGGTCTTACAGCTTATAGAGGCCATAGCCGTAAACTTTTTGCACTG 120 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 61 GATTCATTTGATGAAGGTCTTACAGCTTATAGAGGCCATAGCCGTAAACTTTTTGCTCTG 120 Query 121 TTCACATTTCGCTCACATCGGAAAGGAAGCTGCAGGCAGAAGTATATAACGGAAGAGATA 180 ||||||||||||||||| || ||||||||||||||||||||||||||||| || |||||| Sbjct 121 TTCACATTTCGCTCACACCGAAAAGGAAGCTGCAGGCAGAAGTATATAACAGAGGAGATA 180 Query 181 AAGAAGTATGGGAACGTGAAGAACTGCGGTCGAATCTTCAAATTCAAGGAGCTAATAGCT 240 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 181 AAGAAGTATGGGAACGTGAAGAACTGCGGTCGAATCTTCAAATTCAAGGAACTAATAGCT 240 Query 241 GCAACCGACAATTTCAGCATGGATTGTATGATTGGTGAAGGCGGTTTTGGAAGAGTCTAC 300 |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 241 GCAACCGATAATTTCAGCATGGATTGTATGATTGGAGAAGGCGGTTTCGGAAGAGTCTAC 300 Query 301 AAAGGGTTTCTCACCAGCCTCAATCAGGTGGTGGCTGTAAAGAGGCTTGATAGGAATGGG 360 |||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AAAGGGTTCCTCAGCAGTCTCAATCAGGTGGTGGCTGTAAAGAGGCTTGATAGGAATGGA 360 Query 361 TTGCAAGGAACAAGAGAGTTCTTTGCAGAAGTAATGGTATTGAGTCTGGCTCAACATCCA 420 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| Sbjct 361 TTGCAAGGAACAAGAGAGTTCTTTGCAGAAGTGATGGTATTGAGTTTGGCTCAACATCCA 420 Query 421 AACCTTGTCAATCTCATTGGCTATTGCGTCGAAGACGAGCAACGAGTCCTCGTTTATGAA 480 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| Sbjct 421 AACCTTGTCAATCTCATTGGCTATTGCGTGGAAGACGACCAACGAGTCCTCGTTTACGAA 480 Query 481 TTCATGCCTAACGGATCTTTGGAAGATCATTTGTTCGACTTACCAGAAG-GGTCACCAAG 539 |||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 481 TTCATGCCCAACGGATCTTTGGAAGATCATTTGTTCGACTTACCAGAAGAGG-CACCAAG 539 Query 540 TCTAGACTGGTTCACCAGAATGCGGATAGTGCACGGAGCAGCGAAAGGGCTCGAGTACTT 599 ||||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||| Sbjct 540 TCTAGACTGGTTCACGAGAATGCGGATAGTGCATGGTGCAGCTAAAGGGCTCGAGTACTT 599 Query 600 GCACGACTACGCAGATCCTCCTGTGATCTACCGCGATTTCAAAGCTTCAAACATATTGTT 659 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 GCACGATTATGCAGATCCTCCTGTGATCTACCGCGATTTCAAAGCTTCAAACATATTGTT 659 Query 660 ACAATCTGACTTCAACTCAAAGCTATCGGATTTCGGGTTAGCTAGACTTGGACCAACTGA 719 ||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||| Sbjct 660 ACAATCTGATTTCAACTCAAAGCTATCAGATTTTGGGTTAGCTAGGCTTGGACCAACTGA 719 Query 720 AGGCAAAGATCATGTGTCCACAAGAGTCATGGGAACATACGGATACTGTGCCCCTGAATA 779 |||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| Sbjct 720 AGGCAAAGATCATGTGTCGACTAGAGTCATGGGAACATACGGATACTGTGCTCCTGAATA 779 Query 780 TGCGATGACCGGTCAACTCACTGCTAAATCCGATGTCTACAGTTTCGGTGTTGTCCTTCT 839 |||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| || Sbjct 780 CGCGATGACTGGTCAACTCACTGCTAAATCCGATGTTTACAGCTTCGGTGTTGTCCTCCT 839 Query 840 TGAGATCATTTCCGGAAGACGAGCTATTGATGGCGATAGACCAACTGAAGAACAAAACTT 899 |||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 TGAGATAATTTCTGGGAGACGAGCTATTGATGGCGATAGACCAACTGAAGAACAAAACTT 899 Query 900 GATCTCTTGGGCGGAACCGTTGTTGAAAGATAGAAGGATGTTTGCGCAGATTGTGGATCC 959 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 900 GATCTCTTGGGCGGAACCGTTGTTGAAAGATAGAAGGATGTTTGCACAGATTGTGGATCC 959 Query 960 AAATCTAGATGGGAACTACCCAGTAAAAGGGTTGCATCAAGCTCTAGCGATTGCAGCGAT 1019 ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 960 AAATCTAGAAGGGAATTACCCAGTAAAAGGGTTGCATCAAGCTCTAGCGATTGCAGCAAT 1019 Query 1020 GTGTTTGCAAGAAGAAGCAGAGACTAGGCCATTGATGGGAGATGTGGTCACAGCACTTGA 1079 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 GTGTTTGCAAGAAGAAGCAGAGACTAGGCCATTGATGGGAGATGTGGTCACAGCACTTGA 1079 Query 1080 GTTCTTGGCTAAGCCTATAGAGGTGGTTGATAACACTAACACTACTCCTGCCTC-TC--C 1136 |||||||||||||||||||||||| |||||||||||||| |||||||||||| | || | Sbjct 1080 GTTCTTGGCTAAGCCTATAGAGGTTGTTGATAACACTAATACTACTCCTGCCGCCTCTGC 1139 Query 1137 TACTCAGACATCATCATCTGATTCATCAAACTAAtttttattttctttt 1185 |||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct 1140 TACTCAGACATCATCATCTGATTCATAAAACTAATTTTT-TTTTCTTTT 1187 Score = 239 bits (129), Expect = 5e-62 Identities = 143/149 (96%), Gaps = 3/149 (2%) Strand=Plus/Plus Query 1203 taagtttttttttcttttAACGTAAAACCCAAGAAAAGTAATTAGGGTTAGAGTTCGAAG 1262 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1171 TAA-TTTTTTTTTCTTTTAACGTAAAATCCAAGAAAAGTAATTAGGGTTAGAGTTCGAAG 1229 Query 1263 TCAATCGGATGCAAA--CAGTTCTTTGTAATATGGTGTAATTTGGCATTGGGGAGATCGC 1320 ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 1230 TCAATCGGATGCAAAAACAATTCTTTGTAATATGGTGTAATTTGGCATTGGGGAGATCGC 1289 Query 1321 ATCATCTGTGAATCACATTGTTAATCTCT 1349 ||||||||||||||||||| ||||||||| Sbjct 1290 ATCATCTGTGAATCACATTATTAATCTCT 1318 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52031274670 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5