BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61860.1
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475144 jgi|Araly1|475144|fgenesh2_kg.2__274__AT1G61860.1 1869 0.0
> Ahg475144 jgi|Araly1|475144|fgenesh2_kg.2__274__AT1G61860.1
Length=1337
Score = 1869 bits (1012), Expect = 0.0
Identities = 1131/1189 (95%), Gaps = 6/1189 (1%)
Strand=Plus/Plus
Query 1 ATGATGAAGCTTTGTCCTTGTTTCATCAACCCGCATCAGCTTGGACCTAATTCGCCTAGA 60
||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 1 ATGATGAAGCTTTGTCCTTGTTTCATCAACCCGCAACAACTCGGACCTAATTCGCCTAGA 60
Query 61 GATTCATTTGACGAAGGTCTTACAGCTTATAGAGGCCATAGCCGTAAACTTTTTGCACTG 120
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GATTCATTTGATGAAGGTCTTACAGCTTATAGAGGCCATAGCCGTAAACTTTTTGCTCTG 120
Query 121 TTCACATTTCGCTCACATCGGAAAGGAAGCTGCAGGCAGAAGTATATAACGGAAGAGATA 180
||||||||||||||||| || ||||||||||||||||||||||||||||| || ||||||
Sbjct 121 TTCACATTTCGCTCACACCGAAAAGGAAGCTGCAGGCAGAAGTATATAACAGAGGAGATA 180
Query 181 AAGAAGTATGGGAACGTGAAGAACTGCGGTCGAATCTTCAAATTCAAGGAGCTAATAGCT 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 AAGAAGTATGGGAACGTGAAGAACTGCGGTCGAATCTTCAAATTCAAGGAACTAATAGCT 240
Query 241 GCAACCGACAATTTCAGCATGGATTGTATGATTGGTGAAGGCGGTTTTGGAAGAGTCTAC 300
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 241 GCAACCGATAATTTCAGCATGGATTGTATGATTGGAGAAGGCGGTTTCGGAAGAGTCTAC 300
Query 301 AAAGGGTTTCTCACCAGCCTCAATCAGGTGGTGGCTGTAAAGAGGCTTGATAGGAATGGG 360
|||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAAGGGTTCCTCAGCAGTCTCAATCAGGTGGTGGCTGTAAAGAGGCTTGATAGGAATGGA 360
Query 361 TTGCAAGGAACAAGAGAGTTCTTTGCAGAAGTAATGGTATTGAGTCTGGCTCAACATCCA 420
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 361 TTGCAAGGAACAAGAGAGTTCTTTGCAGAAGTGATGGTATTGAGTTTGGCTCAACATCCA 420
Query 421 AACCTTGTCAATCTCATTGGCTATTGCGTCGAAGACGAGCAACGAGTCCTCGTTTATGAA 480
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 421 AACCTTGTCAATCTCATTGGCTATTGCGTGGAAGACGACCAACGAGTCCTCGTTTACGAA 480
Query 481 TTCATGCCTAACGGATCTTTGGAAGATCATTTGTTCGACTTACCAGAAG-GGTCACCAAG 539
|||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 481 TTCATGCCCAACGGATCTTTGGAAGATCATTTGTTCGACTTACCAGAAGAGG-CACCAAG 539
Query 540 TCTAGACTGGTTCACCAGAATGCGGATAGTGCACGGAGCAGCGAAAGGGCTCGAGTACTT 599
||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 540 TCTAGACTGGTTCACGAGAATGCGGATAGTGCATGGTGCAGCTAAAGGGCTCGAGTACTT 599
Query 600 GCACGACTACGCAGATCCTCCTGTGATCTACCGCGATTTCAAAGCTTCAAACATATTGTT 659
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GCACGATTATGCAGATCCTCCTGTGATCTACCGCGATTTCAAAGCTTCAAACATATTGTT 659
Query 660 ACAATCTGACTTCAACTCAAAGCTATCGGATTTCGGGTTAGCTAGACTTGGACCAACTGA 719
||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 660 ACAATCTGATTTCAACTCAAAGCTATCAGATTTTGGGTTAGCTAGGCTTGGACCAACTGA 719
Query 720 AGGCAAAGATCATGTGTCCACAAGAGTCATGGGAACATACGGATACTGTGCCCCTGAATA 779
|||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 720 AGGCAAAGATCATGTGTCGACTAGAGTCATGGGAACATACGGATACTGTGCTCCTGAATA 779
Query 780 TGCGATGACCGGTCAACTCACTGCTAAATCCGATGTCTACAGTTTCGGTGTTGTCCTTCT 839
|||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 780 CGCGATGACTGGTCAACTCACTGCTAAATCCGATGTTTACAGCTTCGGTGTTGTCCTCCT 839
Query 840 TGAGATCATTTCCGGAAGACGAGCTATTGATGGCGATAGACCAACTGAAGAACAAAACTT 899
|||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGAGATAATTTCTGGGAGACGAGCTATTGATGGCGATAGACCAACTGAAGAACAAAACTT 899
Query 900 GATCTCTTGGGCGGAACCGTTGTTGAAAGATAGAAGGATGTTTGCGCAGATTGTGGATCC 959
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 900 GATCTCTTGGGCGGAACCGTTGTTGAAAGATAGAAGGATGTTTGCACAGATTGTGGATCC 959
Query 960 AAATCTAGATGGGAACTACCCAGTAAAAGGGTTGCATCAAGCTCTAGCGATTGCAGCGAT 1019
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 960 AAATCTAGAAGGGAATTACCCAGTAAAAGGGTTGCATCAAGCTCTAGCGATTGCAGCAAT 1019
Query 1020 GTGTTTGCAAGAAGAAGCAGAGACTAGGCCATTGATGGGAGATGTGGTCACAGCACTTGA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GTGTTTGCAAGAAGAAGCAGAGACTAGGCCATTGATGGGAGATGTGGTCACAGCACTTGA 1079
Query 1080 GTTCTTGGCTAAGCCTATAGAGGTGGTTGATAACACTAACACTACTCCTGCCTC-TC--C 1136
|||||||||||||||||||||||| |||||||||||||| |||||||||||| | || |
Sbjct 1080 GTTCTTGGCTAAGCCTATAGAGGTTGTTGATAACACTAATACTACTCCTGCCGCCTCTGC 1139
Query 1137 TACTCAGACATCATCATCTGATTCATCAAACTAAtttttattttctttt 1185
|||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1140 TACTCAGACATCATCATCTGATTCATAAAACTAATTTTT-TTTTCTTTT 1187
Score = 239 bits (129), Expect = 5e-62
Identities = 143/149 (96%), Gaps = 3/149 (2%)
Strand=Plus/Plus
Query 1203 taagtttttttttcttttAACGTAAAACCCAAGAAAAGTAATTAGGGTTAGAGTTCGAAG 1262
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1171 TAA-TTTTTTTTTCTTTTAACGTAAAATCCAAGAAAAGTAATTAGGGTTAGAGTTCGAAG 1229
Query 1263 TCAATCGGATGCAAA--CAGTTCTTTGTAATATGGTGTAATTTGGCATTGGGGAGATCGC 1320
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 TCAATCGGATGCAAAAACAATTCTTTGTAATATGGTGTAATTTGGCATTGGGGAGATCGC 1289
Query 1321 ATCATCTGTGAATCACATTGTTAATCTCT 1349
||||||||||||||||||| |||||||||
Sbjct 1290 ATCATCTGTGAATCACATTATTAATCTCT 1318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52031274670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5