BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61870.1
Length=1612
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475143 jgi|Araly1|475143|fgenesh2_kg.2__273__AT1G61870.1 2239 0.0
Ahg471300 jgi|Araly1|471300|fgenesh2_kg.1__1254__AT1G11630.1 747 0.0
> Ahg475143 jgi|Araly1|475143|fgenesh2_kg.2__273__AT1G61870.1
Length=1362
Score = 2239 bits (1212), Expect = 0.0
Identities = 1315/1365 (96%), Gaps = 5/1365 (0%)
Strand=Plus/Plus
Query 3 TCTCCGTCTTCTTCTTCATTTCACAGTCATCTTCTTCATCTAAAACCCTAAGAAAACAAC 62
||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 TCTCCGTCTGCTTCTCCATTTCACAGTCGTCTTCTTCATCTAAAACCCTAAGAAAACAAC 60
Query 63 AATGGCGTTACTCTCTCGAATCCGTTCATCAACATCTCTCTTCCGTCACCTCAACGCATC 122
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 AATGGCGTTACTCTCTCGAATCCGTTCATCAACCTCTCTCTTCCGTCACCTCAACGCATC 120
Query 123 ACCACAAATCCGATCACTCTCCTCGGCTTCAACAATCCTCTCACCAGATTcaaaaactcc 182
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 ACCCCAAATCCGATCACTCTCCTCCGCTTCAACAATCCTCTCACCAGATTCAAAAACTCC 180
Query 183 tctcacaagcaaagaaaaaagcaaagcagctctctctcttctcaaaTCCGAGAAAGATCC 242
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 TCTCACTAGCAAAGAAAAAAGCAAAGCAGCTCTTTCTCTTCTCAAATCCGAGAAAGATCC 240
Query 243 AGATCGTATCCTCGAAATCTGCCGTGCAGCTTCTCTTACTCCAGATTGCCGCATAGATCG 302
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 241 AGATCGTATCCTCGAAATCTGCCGTGCAGCTTCTCTTACTCCAGATTGTCACATAGATCG 300
Query 303 AATCGCTTTCTCCGCCGCCGTCGAGAATCTCGCCGAGAAGAAACATTTCTCCGCTGTATC 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AATCGCTTTCTCCGCCGCCGTCGAGAATCTCGCCGAGAAGAAACATTTCTCCGCTGTATC 360
Query 363 GAATCTCCTCGACGGATTCATCGAAAA-CAGACCAGATCTCAAATCGGAACGTTTTGCTG 421
|||||||||||| |||||||||||||| | ||| ||||||||||||||||||||| ||||
Sbjct 361 GAATCTCCTCGATGGATTCATCGAAAATC-GACAAGATCTCAAATCGGAACGTTTCGCTG 419
Query 422 CTCACGCCATTGTTTTGTATGCTCAAGCTAATATGCTTGATCACTCTTTAAGAGTTTTTC 481
||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 420 CTCACGCTATTGTTTTGTATGCTCAAGCGAATATGCTTGATCACTCTTTAAGGGTTTTTC 479
Query 482 GTGATCTCGAGAAATTCGAAATCTCTCGTACGGTGAAGTCTTTAAACGCGCTTCTCTTTG 541
||||||| |||||||| |||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 480 GTGATCTTGAGAAATTTGAAATCCCTCGTACGGTGAAGTCTTTAAACGCTCTTCTCTTTG 539
Query 542 CTTGTTTAGTAGCTAAGGATTACAAAGAAGCTAAAAGAGTTTACATTGAGATGCCTAAGA 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CTTGTTTAGTAGCTAAGGATTACAAAGAAGCTAAAAGAGTTTACATTGAGATGCCTAAGA 599
Query 602 TGTATGGAATTGAACCTGATCTCGAGACTTATAATCGTATGATCAAAGTGTTTTGTGAAT 661
||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 600 TGTATGGGATTGAACCTGATCTTGAGACTTATAATCGTATGATCAAAGTGTTCTGTGAAT 659
Query 662 CCGGTTCAGCGAGTTCGTCGTACTCCATTGTTGCGGAGATGGAGAGGAAAGGGATAAAGC 721
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CCGGTTCAGCGAGTTCGGCGTACTCCATTGTTGCGGAGATGGAGAGGAAAGGGATAAAGC 719
Query 722 CGAATAGTTCAAGCTTTGGTTTGATGATTTCTGGGTTTTATGCAGAGGATAAGAGTGATG 781
|||||||||| ||||||||||||||||||||||| |||||| |||||||||||| |||||
Sbjct 720 CGAATAGTTCTAGCTTTGGTTTGATGATTTCTGGATTTTATTCAGAGGATAAGAATGATG 779
Query 782 AAGTAGGGAAAGTGTTGGCGATGATGAAAGATCGTGGTGTTAATATCGGTGTTTCGACTT 841
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 780 AAGTAGGGAAAGTGTTGGTGATGATGAAAGATCGCGGTGTTAATATCGGTGTTTCGACTT 839
Query 842 ATAACATTAGGATTCAGAGTTTGTGTAAGAGGAAGAAATCTAAGGAAGCGAAGGCTTTGC 901
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 840 ATAACATTAGGATTCAGAGTTTGTGTAAGAGGAAGAAATCTAAGGAAGCAAAGGCTTTGC 899
Query 902 TTGATGGGATGTTATCTGCAGGGATGAAACCGAATACGGTAACGTATAGCCATTTGATTC 961
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 900 TTGATGGGATGTTATCTGCAGGGATGAAACCGAATACGGTTACTTATAGCCATTTGATTC 959
Query 962 ACGGGTTTTGTAATGAAGATGATTTCGAGGAAGCGAAGAAGTTGTTTAAGATTATGGTGA 1021
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 960 GTGGGTTTTGCAATGAAGATGATTTCGAGGAAGCGAAGAAGTTGTTTAAGGTTATGGTGA 1019
Query 1022 ACAGAGGATGTAAGCCTGATAGTGAGTGTTACTTCACTCTTATATATTACTTATGCAAAG 1081
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1020 ACAGAGGATGTAAGCCTGATAGTGAGTGTTACTTCACTCTTATATATTACTTGTGCAAAG 1079
Query 1082 GAGGAGACTTTGAGACGGCTTTGAGT-CTTTGTAAAGAGAGTATGGAGAAGAATTGGGTT 1140
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1080 GAGGAGACTTTGAGACGGCTTTG-GTTCTTTGTAAAGAGAGTATGGAGAAGAATTGGGTT 1138
Query 1141 CCGAGTTTTAGTATCATGAAGTCGCTTGTTAACGGACTAGCTAAGGATTCGAAAGTCGAA 1200
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1139 CCGAGTTTTAGTATCATGAAGTCGCTTGTTAACGGACTAGCTAAAGATTCGAAAGTCGAC 1198
Query 1201 GAAGCAAAGGAGCTTATTGGGCAAGTGAAAGAGAAGTTCACTAGAAACGTTGAGTTGTGG 1260
|||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1199 GAAGCAAAGGAGCTCATTGGGCAAGTAAAAGAGAAGTTCACTAGAAACGTCGAGTTGTGG 1258
Query 1261 AACGAAGTCGAAGCCGCATTACCGCAATGAATCAAAAGATAGTTCCCGAGATCGGTATTT 1320
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AATGAAGTCGAAGCCGCATTACCGCAATGAATCAAAAGATAGTTCCCGAGATCGGTATTT 1318
Query 1321 TCAAAATTTTACGAATTTTCTCTCTTCATTTGTCAGCAATGAAAT 1365
||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1319 TCAAA-TTTTACGAATTTTCTCTCTTCATTTGTCAGCAATGCAAT 1362
> Ahg471300 jgi|Araly1|471300|fgenesh2_kg.1__1254__AT1G11630.1
Length=1485
Score = 747 bits (404), Expect = 0.0
Identities = 913/1150 (79%), Gaps = 70/1150 (6%)
Strand=Plus/Plus
Query 182 ctctcacaagcaa--agaa-aaaag-caaagc-agctctctctcttctcaaaTCCGAGAA 236
||||||| ||||| |||| || || | ||| | ||||||| |||||||||||||||||
Sbjct 117 CTCTCACTAGCAAGCAGAAGAAGAGTC-GAGCTA-CTCTCTCCCTTCTCAAATCCGAGAA 174
Query 237 -AGATCCAG-ATCGTATCCTCGAAATCTGCCG-TGCAGCTTCTCTTACTCCAGATTGCCG 293
| |||| | |||| ||||||||||| ||||| | | ||||| || || || |||| |
Sbjct 175 TA-ATCC-GAATCGGATCCTCGAAATTTGCCGAT-CCGCTTCCCTCACGCCTGATTATCA 231
Query 294 CATAGATCGAATCGCT-TTCTCCGCCGCCGTCGAGA-ATCTCGCCGAGA-AGAAACATTT 350
| | || || ||| | ||||||| ||| || | || | || | ||| | ||||||| ||
Sbjct 232 CGTGGACCGTATC-ATCTTCTCCGTCGCGGTGGTGACA-CTAG-CGAAAGAGAAACACTT 288
Query 351 C-TCCGCTGTATCGAATCTCCTCGACGGATTCATCGAAAA-CAGACCAGATCTC-AAATC 407
| | |||||| ||| | || |||||||| |||||| |||| || ||| |||| | |||||
Sbjct 289 CGT-CGCTGTGTCGCAGCTTCTCGACGGTTTCATCCAAAACCA-ACCCGATC-CAAAATC 345
Query 408 GGA-ACGTTTTGCTGCT-CACGCCATTGTTTTGTATGCTCAAGCTAATATGCTTGATC-A 464
|| | |||| || | | | ||||||| | || || | || ||| ||||||||||||| |
Sbjct 346 CGAGA-GTTTCGCAG-TCCGCGCCATTATCTTATACGGTCGAGCGAATATGCTTGATCGA 403
Query 465 CTCTTTA-AGAGTTTTTCGTGATCTCGAGAAATTCGAAATCTCTCGTACGGTGAAGTCTT 523
||| || | | |||||||| |||||| ||| ||| ||| | | |||||||||||||
Sbjct 404 -TCTATACA-AACATTTCGTGACCTCGAGCAATACGAGATCCCGAGGACGGTGAAGTCTT 461
Query 524 TAAACGCGCTTCTCTTTGCTTGTTTAGTAGCTAAGGATTACAAAGAAGCTAAAAGAGTTT 583
| || || ||||| |||||||||||| | |||||||||||||||||||| || | || |
Sbjct 462 TGAATGCTCTTCTTTTTGCTTGTTTAATGGCTAAGGATTACAAAGAAGCGAATCGTGTGT 521
Query 584 ACATTGAGATGCCTAAGATGTATGGAATTGAACCTGATCTCGAGACTTATAATCGTATGA 643
|| | || ||||| ||||| ||||| ||||||||||||||||| ||||| ||| | ||||
Sbjct 522 ACCTCGAAATGCCGAAGATTTATGGCATTGAACCTGATCTCGAAACTTACAATAGAATGA 581
Query 644 TCAAAGTGTTTTGTGAATCCGGTTCAGCGAGTTCGTCGTACTCCATTGTTGCGGAGATGG 703
| | ||| || |||||||| |||||| |||||| || |||||||||||||| |||||||
Sbjct 582 TTAGAGTCTTGTGTGAATCAGGTTCAACGAGTTTATCATACTCCATTGTTGCAGAGATGG 641
Query 704 AGAGGAAA-GGGATAAAGCCGAATAG-TTCAAGCTTTGGTTTGATGATTTCTGGGTTTTA 761
|||||||| ||| ||||||| || || |||||| ||||| || |||||| | ||||||
Sbjct 642 AGAGGAAATGGG-TAAAGCC-AACAGCTTCAAGTTTTGGGTTAATGATTGAT-GGTTTT- 697
Query 762 TGC-A-GAGGATAAGAGTGATGAAGTAG-GGAAAGTGTTGGCG-ATGATGAAAG-ATCGT 816
| | | ||||| ||| |||||| || | |||||||| | | | |||||| | | || |
Sbjct 698 TACAAGGAGGAGAAGTTTGATGATGT-GAGGAAAGTGAT-GAGAATGATGGATGAAT-TT 754
Query 817 GGTGTTAATATCGGTGTTTCGACTTATAACATTAGGATTCAGAGTTTGTGTAAGAGGAAG 876
|||||| || | |||||| | ||||| ||||||| ||||||| |||||||||| ||||||
Sbjct 755 GGTGTTCATGTTGGTGTTGCTACTTACAACATTATGATTCAGTGTTTGTGTAAAAGGAAG 814
Query 877 AAATCT-AAGGAAGCGAAGGCTTTGCTTGATGGGATGTTA--TC-TGCAGGGATGAAACC 932
|||||| | ||||| ||||| ||| |||||||| |||| || || | |||||| |||
Sbjct 815 AAATCTGCA-GAAGCAAAGGCGTTGATTGATGGG--GTTATGTCTTGTA-GGATGAGACC 870
Query 933 GAATACGGTAACGTA-TAGCCATTTGATTCACGGGTTTTGTAATGAAGATG-ATTTCGAG 990
|||| |||| || || | | | ||||||||| |||||||| | ||| || | |||| ||
Sbjct 871 GAATTCGGTGACTTATTCG-CTTTTGATTCATGGGTTTTGCAGTGAGGA-GAATTTGGAT 928
Query 991 GAAGCGAAGAAGTTGTTTAAGATTATGGTGAACAGAGGATGTAAGCCTGATAGTGAGTGT 1050
||||| | ||| |||||| || |||||||| | || || | ||||||||||||||| |||
Sbjct 929 GAAGCTATGAATTTGTTTGAGGTTATGGTGTATAGTGGGTATAAGCCTGATAGTGAATGT 988
Query 1051 TACTTCACTCTT-ATATATTACTTATGCAAAGGAGGAGACTTTGAGACGGCTTTGAGT-C 1108
||||||||| || ||| ||| ||| || ||||| || ||||||||||| ||||||| | |
Sbjct 989 TACTTCACT-TTGATACATTGCTTGTGTAAAGGTGGGGACTTTGAGACAGCTTTGA-TCC 1046
Query 1109 TTTGTAAAGAGAGTATGGAGAAGAATTGGGTTCCGAGTTTTAGTATCATGAAGTCGCTTG 1168
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1047 TTTGTAGGGAGAGTATGGAGAAGAATTGGGTTCCGAGTTTTAGTATCATGAAGTGGCTTT 1106
Query 1169 TTAACGGACTAGCTAAG--GATTCGAAAG-TCGAAGAAGCAAAGGAGCTTATTGGGCAAG 1225
|||| |||||||| ||| | ||| |||| |||| ||||||||||| || |||| |||||
Sbjct 1107 TTAATGGACTAGC-AAGTCG-TTC-AAAGGTCGATGAAGCAAAGGAACTCATTGTGCAAG 1163
Query 1226 TGAAAGAGAAGTTCACTAGAAACGTTGAGTTGTGGAACGAAGTCGAAGCCGCATTACCGC 1285
| ||||||||||| || ||||| ||| | |||||||| ||||||||||| ||||| || |
Sbjct 1164 TAAAAGAGAAGTTTACCAGAAATGTTTATTTGTGGAATGAAGTCGAAGCTGCATTGCCTC 1223
Query 1286 AATGAATCAA 1295
| |||| |||
Sbjct 1224 AGTGAA-CAA 1232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60411128570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5