BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61890.1
Length=1956
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475142 jgi|Araly1|475142|fgenesh2_kg.2__272__AT1G61890.1 2531 0.0
> Ahg475142 jgi|Araly1|475142|fgenesh2_kg.2__272__AT1G61890.1
Length=1706
Score = 2531 bits (1370), Expect = 0.0
Identities = 1610/1722 (93%), Gaps = 32/1722 (2%)
Strand=Plus/Plus
Query 111 aaaaaaaaTGAATTCAGAATCGCTAGAAAATCTTCACCGTCCATTAATCGAATCATCGAA 170
||||||||||||||||||||| |||||||||| ||||||||||| || ||||| |||||
Sbjct 1 AAAAAAAATGAATTCAGAATCATTAGAAAATCTCCACCGTCCATTGATTGAATCGTCGAA 60
Query 171 GTCGTTCGTCGATTATCGTCTCGAGACTGTGTTAACAGATCGAGAGTTACCGTATTTTCG 230
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 61 ATCGTTCGTCGATTATCGTCTCGAGACTGTGTTAACAGATCGAGAATTGCCGTATTTTCG 120
Query 231 CCGGATTTATCTAGCGATGATGATTGAGATGAAGTTTCTCTTTCATCTGGCGGCTCCGGC 290
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 121 CCGGATTTATCTAGCGATGGTGATTGAGATGAAGTTTCTCTTTCATTTGGCGGCTCCGGC 180
Query 291 GATCTTTGTTTACGTCATCAACAACGGCATGTCAATTCTTACACGTATCTTCGCTGGACA 350
||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| || ||
Sbjct 181 GATCTTTGTGTACGTCATCAACAACGGTATGTCGATTCTCACACGTATCTTCGCCGGTCA 240
Query 351 CGTAGGAAGCTTCGAACTCGCCGCCGCTTCACTTGGAAACAGTGGTTTCAACATGTTCAC 410
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 CGTCGGAAGCTTCGAACTCGCCGCCGCTTCACTTGGAAACAGTGGTTTCAATATGTTCAC 300
Query 411 CTATGGACTTCTGCTTGGAATGGGAAGTGCAGTGGAAACATTATGTGGTCAAGCACATGG 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTATGGACTTCTGCTTGGAATGGGAAGTGCAGTGGAAACATTATGTGGTCAAGCACATGG 360
Query 471 AGCTCATAGATACGAAATGCTTGGAGTTTACCTCCAAAGATCAACAGTT-GTTCTAATCC 529
||||||| ||||||||||||| || ||||||||||||||||||||| || ||||||||||
Sbjct 361 AGCTCATCGATACGAAATGCTCGGTGTTTACCTCCAAAGATCAACA-TTGGTTCTAATCC 419
Query 530 TAACATGTCTACCAATGTCATTTCTCTTCCTCTTCTCAAATCCGATCCTCACAGCACTTG 589
|||||||| ||||||||||| |||||||||||||||||||||| ||||| || ||||||
Sbjct 420 TAACATGTATACCAATGTCACTTCTCTTCCTCTTCTCAAATCCAATCCTTACTTCACTTG 479
Query 590 GAGAGCCAGAGCAAGTGGCAACATTGGCTTCAGTATTCGTCTACGGTATGATCCCGGTGA 649
|||||||| | |||||||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 480 GAGAGCCAAAACAAGTGGCAACATTAGCTTCCGTATTCGTCTACGGTATGATCCCAGTGA 539
Query 650 TCTTCGCTTACGC-AGTCAATTTCCCTATCCAGAAGTTTCTCCAATCACAAAGCATCGTC 708
||||||||||||| | |||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 540 TCTTCGCTTACGCTA-TCAATTTCCCTATCCAAAAGTTTCTCCAATCACAAAGCATTGTC 598
Query 709 ACTCCAAGTGCCTACATATCAGCTGCAACGCTTGTGATCCATCTCATACTTTCGTGGATC 768
|||||||| || |||||||| || |||||||| |||||||||||| | ||||||||||||
Sbjct 599 ACTCCAAGCGCTTACATATCCGCCGCAACGCTCGTGATCCATCTCGTTCTTTCGTGGATC 658
Query 769 GCTGTGTATCGTCTTGGTTACGGTCTTTTGGCTTTGTCTTTGATACATAGCTTCTCGTGG 828
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 659 GCTGTGTATCGTCTTGGTTATGGTCTTTTGGCTTTATCTTTGATACATAGCTTCTCGTGG 718
Query 829 TGGATCATTGTTGTGGCTCAGATTGTTTATATTAAAATGAGTCCGAGATGTCGTCGGACT 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TGGATCATTGTTGTGGCTCAGATTGTTTATATTAAAATGAGTCCGAGATGTCGTCGGACT 778
Query 889 TGGGAAGGTTTTAGTTGGAAAGCTTTTGAAGGTCTTTGGGATTTTTTCCGATTATCAGCT 948
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 779 TGGGAAGGTTTTAGTTGGAAAGCTTTTGAAGGTCTTTGGGATTTTTTCCGATTATCTGCT 838
Query 949 GCTTCTGCCGTCATGCTTTGTCTTGAATCTTGGTACTCTCAGATTCTTGTTTTACTCGCC 1008
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 839 GCTTCTGCCGTCATGCTTTGCCTTGAATCTTGGTACTCTCAGATTCTTGTTTTGCTCGCT 898
Query 1009 GGACTTCTCAAGAACCCTGAGCTTGCTTTGGATTCTCTTGCTATCTGCATGTCAATTTCT 1068
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 899 GGACTTCTCAAGAACCCTGAACTTGCTTTGGATTCTCTCGCTATCTGCATGTCAATTTCT 958
Query 1069 GCAATCTCATTCATGGTCTCCGTTGGATTCAACGCAGCTGCAAGTGTGAGAGTAAGCAAC 1128
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 959 GCAATCTCATTCATGGTCTCCGTTGGATTCAATGCAGCTGCAAGTGTGAGAGTAAGCAAT 1018
Query 1129 GAGCTAGGAGCCGGAAACCCGAGAGCAGCCGCGTTCTCCACAGTCGTGACAACGGGAGTA 1188
||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||
Sbjct 1019 GAGCTAGGAGCCGGAAACCCGAGAGCAGCCGCGTTCTCCACGGTAGTGACGACTGGAGTA 1078
Query 1189 TCATTCTTACTATCGGTTTTCGAAGCCATCGTGGTCTTATCGTGGCGTCACGTCATCAGC 1248
||||||||||||||| |||| ||||| |||||||||||||| |||||| | |||||||||
Sbjct 1079 TCATTCTTACTATCGATTTTTGAAGCTATCGTGGTCTTATCATGGCGTAATGTCATCAGC 1138
Query 1249 TATGCGTTTACTGATAGTCCAGCAGTGGCTGAGGCCGTTGCGGATTTATCTCCCTTTTTA 1308
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TATGCGTTTACAGATAGTCCTGCAGTGGCTGAGGCCGTTGCGGATTTATCTCCCTTTTTA 1198
Query 1309 GCCATCACAATTGTCCTCAATGGAATTCAGCCTGTTTTGTCCGGTGTGGCTGTTGGATGT 1368
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1199 GCCATCACAATTGTCCTCAATGGAATTCAGCCAGTTTTGTCCGGTGTGGCTGTTGGATGT 1258
Query 1369 GGATGGCAAGCATTTGTTGCGTACGTAAACATTGGATGTTACTACGTTGTGGGGATTCCA 1428
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1259 GGATGGCAAGCATTTGTTGCGTACGTAAACATTGGATGTTACTACGTTGTGGGGATACCA 1318
Query 1429 GTGGGATTCGTTCTTGGCTTCACTTATGATATGGGAGCTAAGGGAATATGGACTGGGATG 1488
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1319 GTGGGATTCGTTCTTGGCTTCACTTATGATATGGGAGCTAAGGGAATATGGACAGGGATG 1378
Query 1489 ATTGGTGGTACTTTAATGCAAACAATAATCTTAGTGATTGTCACTTTACGAACTGATTGG 1548
||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1379 ATTGGTGGTACATTAATACAGACAATAATCTTAGTGATTGTCACTTTACGAACTGATTGG 1438
Query 1549 GACAAAGAGGTTGAGAAAGCTTCGAGCAGATTGGACCAGTGGGAAGAGAGCCGTGAGCCG 1608
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 GACAAAGAGGTTGAAAAAGCTTCGAGCAGATTGGACCAGTGGGAAGAGAGCCGTGAGCCG 1498
Query 1609 CTTTTGAAGCAATAAATAAATTAATGAAATGATTTGtttatttttattttttttGGGAGT 1668
|||||||||| ||| | ||| || | ||| | |||||||||||
Sbjct 1499 CTTTTGAAGC----AAT--A--AAT--AA--A-----TTA-----A---TTTTTGGGAGT 1533
Query 1669 TTTGAGGTCAGATTGAAATCAAAATTTTTGTTTCCCCGAAATAT-GGCGATAGATGATCA 1727
||||||||||||||||||||||||||||||||||||| ||| || |||||| || |||||
Sbjct 1534 TTTGAGGTCAGATTGAAATCAAAATTTTTGTTTCCCCCAAA-ATTGGCGATGGAGGATCA 1592
Query 1728 CTTGTAAGATGCATATTCAATTGTTAAACTCTCGTTTTTCAATCGAAAAATGTATATCGC 1787
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1593 CTTGTAAAATGCAGATTCAATTGTTAAACTCTCGTTTTTCAATCGAAAAATGTATGTCGC 1652
Query 1788 TTTGTTATTTAATGACTTGGAAATTTGAGttttttttttGGT 1829
||||||| |||||||||||| ||||||| ||||||| |||||
Sbjct 1653 TTTGTTAATTAATGACTTGGTAATTTGA-TTTTTTTCTTGGT 1693
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73514172850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5