BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61900.1
Length=1926
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475141 jgi|Araly1|475141|fgenesh2_kg.2__271__AT1G61900.1 2885 0.0
> Ahg475141 jgi|Araly1|475141|fgenesh2_kg.2__271__AT1G61900.1
Length=1917
Score = 2885 bits (1562), Expect = 0.0
Identities = 1818/1937 (94%), Gaps = 35/1937 (2%)
Strand=Plus/Plus
Query 1 CACAACAGACTGTGTTCATTACTCGTGGGGTCGGtctctctcctctctatctctctcttt 60
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 CACAACAGACTGTGTTCATTACTCGTGGGGTC--TCTCTCTCCTCTCTATCTCTCTCTTT 58
Query 61 ctctGTGAAGACGAAGACAGCTGTTTCTGAGTTTCCCTTTTGTTTTTGTGTCTA---TCT 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 59 CTCTGTGAAGACGAAGACAGCTGTTTCTGAGTTTCCCTTTTGTTTTTGTGTCTATCTTCT 118
Query 118 TCTCAACCAAGTTTTTTGGTGTCCAAAAT-TCGCAAAGAAACGCCTTTCTCTTCTTC-TC 175
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 119 TCTCAACCAAGTTTTTTTGTGTCCAAAATCTCGCAAAGAAACGCCTTTCTCTTCTTCATC 178
Query 176 CTTAGATTTCTCGGACTTTCTTTCAATAGTGGGAAAAAGACACAGAATCTC-AAAAAAGT 234
||||||||||||||||||||||| | ||||||||||||| |||||||||| ||||||||
Sbjct 179 CTTAGATTTCTCGGACTTTCTTTTACTAGTGGGAAAAAG--ACAGAATCTCAAAAAAAGT 236
Query 235 CCTCTCTTGTCCAAAGTCCAAAGCTTTTGAAAGAGACCATAAAAACAGAGCTTAAtc-tc 293
||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct 237 CCTAACTTGTCCAAAGTCCAAAGCTTTTGAAAGAGACCATAAAAGCAGTGCTTAATCTTC 296
Query 294 tctctgtctctgtc--tctctctct-TTTGGAGGCTTGAGGATGACGAGAAGAGCTGAAT 350
||||||||||||| | ||||||| | | || | || ||||||||| |||||||||
Sbjct 297 -CTCTGTCTCTGTCTGTGTCTCTCTCTCT-GA-G-AAGAAAATGACGAGAGGAGCTGAAT 352
Query 351 TTGAGATGGGTTTGTTCGTGATTCTTCAATCCATGTTTCTGATATCTCTATGTTCATCAC 410
||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
Sbjct 353 TTGAGATGGGTTTGTTCGTGATTCTTCAATCCATGTTTCTGATGTCTCTATGTGGTTTA- 411
Query 411 AG-AAACCTGAGGAGTTCTTACCTGAGATATCACCAGATACTTCTCCTCAACCGTTTCTT 469
| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 412 GGTTCATCTGAGGAGTTCTTACCTGAGATATCACCAGATACTTCTCCTCAACCATTTCTT 471
Query 470 -CCTTTCATTGCACCTTCTCCAATGGTTCCATACATAAATAGTACCATGCCTAAACTATC 528
||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 472 CCCTTT-ATTGCCCCTTCTCCAATGGTTCCATACATAAACAGTACCATGCCGAAACTATC 530
Query 529 AGGGCTTTGCTCGCTTAATTTCAGTGCGTCTGAGAGTTTGATTCAGACTACTTCACACAA 588
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 531 GGGGCTTTGTTCGCTTAATTTCAGTGCGTCTGAGAGTTTGATTCAGACAACTTCACACAA 590
Query 589 CTGTTGGACTGTTTTTGCTCCATTGTTGGCAAATGTGATGTGTTGTCCTCAGCTAGATGC 648
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 591 TTGTTGGACTGTTTTTGCTCCATTGTTGGCAAATGTGATGTGTTGTCCTCAGTTAGATGC 650
Query 649 TACACTCACAATAATCCTTGGTAAAGCGAGTAAAGAAACCGGTTTGCTTGCTTTAAACAG 708
||||||||| |||||||||||||||||||| |||||||||||| |||||||| |||||||
Sbjct 651 TACACTCACGATAATCCTTGGTAAAGCGAGCAAAGAAACCGGTATGCTTGCTCTAAACAG 710
Query 709 AACCCAGTCTAAGCACTGTCTCTCGGATTTAGAGCAAATCTTGGTAGGAAAAGGCGCTTC 768
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 711 AACCCAGTCTAAGCACTGTCTCTCGGATTTAGAGCAAATCTTGGTAGGCAAAGGCGCTTC 770
Query 769 AGGTCAGCTTAATAAGATCTGTTCTATTCACTCGTCGAATCTCACTTCTTCGTCGTGCCC 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 AGGTCAGCTTAATAAGATCTGTTCTATTCACTCGTCGAATCTCACTTCTTCGTCGTGCCC 830
Query 829 TGTTATCAATGTCGATGAGTTTGAAAGCACGGTGGATACAGCGAAACTTCTTTTGGCCTG 888
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 831 TGTTATCAATGTCGATGAATTTGAAAGCACGGTGGATACAGCGAAACTTCTTTTGGCCTG 890
Query 889 TGAAAAAATTGATCCTGTGAAGGAATGTTGCGAAGAGGCTTGCCAAAATGCGATACTCGA 948
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 891 TGAAAAAATCGATCCTGTGAAGGAGTGTTGCGAAGAGGCTTGCCAAAATGCGATACTCGA 950
Query 949 TGCTGCTACGAATATATCTCTTAAAGCATCAGAAACTTTAACTGATAATTCGGATAGGAT 1008
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 TGCTGCTAGGAATATATCTCTTAAAGCATCAGAAACTTTAACTGATAATTCGGATAGGAT 1010
Query 1009 CAATGACTGCAAGAACGTAGTAAACCGCTGGCTCGCTACTAAACTTGACCCTTCTCGGGT 1068
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1011 CAATGATTGCAAGAACGTAGTAAACCGCTGGCTTGCTACTAAACTTGACCCTTCTCGGGT 1070
Query 1069 TAAGGAAACTCTCAGAGGATTAGCAAACTGCAAAATCAATAGAGTTTGTCCTCTTGTCTT 1128
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 TAAGGAAACTCTCAGAGGCTTAGCAAACTGCAAAATCAATAGAGTTTGTCCTCTTGTCTT 1130
Query 1129 TCCGCACATGAAGCATATTGGTGGTAACTGCAGCAACGAGTTGAGTAACCAAACGGGTTG 1188
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1131 TCCGCACATGAGGCATATTGGTGGTAACTGCAGCAACGAGTTGAGTAACCACACGGGTTG 1190
Query 1189 TTGCCGTGCAATGGAGAGTTATGTGTCTCACTTGCAAAAGCAAACACTTATAACCAATTT 1248
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 TTGCCGTGCAATGGAAAGTTATGTGTCTCACTTGCAAAAGCAAACACTTATAACCAATTT 1250
Query 1249 GCAAGCTTTAGATTGCGCAACCAGCCTTGGGACAAAGTTACAGAAACTGAACATCACTAA 1308
|||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||
Sbjct 1251 GCAAGCTTTAGATTGCGCAACCAGCCTTGGCACAAAGCTACAGAAACTTAACATCACTAA 1310
Query 1309 GAACATATTCAGTGTTTGTCATATAAGTCTCAAGGACTTCTCTCTTCAAGTTGGAAACCA 1368
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 GAACATCTTCAGCGTTTGTCATATAAGTCTCAAGGACTTCTCTCTTCAAGTTGGAAACCA 1370
Query 1369 AGAATCTGGTTGTCTATTACCGAGCCTACCATCGGATGCGATATTTGATAAAGACACGGG 1428
||||||||| ||||||||||| ||| ||||||| ||||||||||||||||||||||||||
Sbjct 1371 AGAATCTGGCTGTCTATTACCAAGCTTACCATCCGATGCGATATTTGATAAAGACACGGG 1430
Query 1429 GATAAGCTTTACTTGTGACCTCAATGACAACATTCCCGCTCCGTGGCCTTCATCTTCTCT 1488
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1431 AATAAGCTTTACTTGTGACCTCAACGACAACATTCCCGCTCCGTGGCCTTCATCTTCTCA 1490
Query 1489 ATCCTCAGCCTCTACCTGTAAAAAACCTGTTAGAATTCCTGCTCTTCCAGCTGCTGCCTC 1548
||||||||| |||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 1491 ATCCTCAGCATCTACCTGTAAAAAACCTGTTAGAATTCCTGCGCTCCCGGCTGCTGCCTC 1550
Query 1549 CTCGCAACCTCG-TCTCCACGATGAAGGAGTGACACGTTTGGTGATCTTTGTCTTGTCTA 1607
||||||||| || |||| |||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1551 CTCGCAACC-CGGTCTCTACGATGAAGGAGTGACACGTTTGGTGGTCTTTGCCTTGTCTA 1609
Query 1608 TGCTTCTTGTGATGCTTCTGTCATAGTACCAGAACTAAGCCGGATCCAGTCTTCTCTTAT 1667
|| |||||||||||||||| |||||||| ||||||| |||||||||||||||||| |
Sbjct 1610 TGGTTCTTGTGATGCTTCTATCATAGTA---GAACTAAACCGGATCCAGTCTTCTCTC-T 1665
Query 1668 ACCGGTTTACTAGTCAATAGGTGTGTTTGTGTAGATCAAACTGGTACAGTCAGCTACAAA 1727
|||||||||||||||||||||||| || | ||||||||||| |||| |||| ||| || |
Sbjct 1666 ACCGGTTTACTAGTCAATAGGTGT-TT-GCGTAGATCAAACCGGTATAGTC-GCTGCAGA 1722
Query 1728 AGTCGGATGTTGACATGACCGGTTCAAGTGTATGAGTTGTTGAGGTATAAGTTT-CGGAA 1786
||||| ||||||||||||| ||||||||||| |||||||||||||||||||||| |||||
Sbjct 1723 AGTCGTATGTTGACATGACGGGTTCAAGTGTTTGAGTTGTTGAGGTATAAGTTTTCGGAA 1782
Query 1787 AGTCTTTTTATCTTTATT-GATTTATGATTCTTGAAAACCTTTTTAATGTAAAGAAAAGG 1845
|||||||| |||||| || |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1783 AGTCTTTT-ATCTTTTTTTGATTCATGATTCTTGAAAACCTTTTTAATGTAAAGAAAAGG 1841
Query 1846 TCTTGTAGGGTTTATAACGTAAGGTTATAATATATTTATTTATAGACTGTCGATTTCATA 1905
| |||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1842 TATTGTAGGGTTTATAT-GTAAGCTTATTATATATTTATTTATAGACTGTCGATTTCATA 1900
Query 1906 ATTCAAAAGTGTTACTT 1922
|||||||||||||||||
Sbjct 1901 ATTCAAAAGTGTTACTT 1917
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72371465500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5