BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61930.1
Length=876
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475139 jgi|Araly1|475139|fgenesh2_kg.2__269__AT1G61930.1 1020 0.0
Ahg471309 jgi|Araly1|471309|fgenesh2_kg.1__1263__AT1G11700.1 342 2e-93
> Ahg475139 jgi|Araly1|475139|fgenesh2_kg.2__269__AT1G61930.1
Length=813
Score = 1020 bits (552), Expect = 0.0
Identities = 740/823 (90%), Gaps = 43/823 (5%)
Strand=Plus/Plus
Query 66 ATTAATCAGTGATTAATTTAGAGATTAAAGAAGAGGGTGAAGTTGTTGTTGCATGGCAAA 125
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 22 ATTAATCAGTGATTAGTTTAGAGATTAAAGAAGAGGGTGAA---GTTGTTGCATGGCAAA 78
Query 126 AGGTCGAAAGCC-GACGACAATGAACCGGAGCGATCGATACCTTGGAAGCTACACTTACG 184
||||||||| || |||||| ||||||||||||||||||||||||||||| |||| |||||
Sbjct 79 AGGTCGAAA-CCTGACGACGATGAACCGGAGCGATCGATACCTTGGAAGTTACAGTTACG 137
Query 185 GTGACAGTCACGGAAACTCCGTTACCGACGAATTAGAGCTCGGTGAGGAAGACATCTGGT 244
|||||||||| || |||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 138 GTGACAGTCATGGTAACTCCGTCACCGACGAATTAGAGCTCGCTGAGGAAGACATCTGGT 197
Query 245 CACCGGCCGTCATTCACGACGACACCACCGAGA-ATGAGGAATCCTACGGCACGTGGAAC 303
|||||||||||||| | ||||||| |||||| | || ||||| ||||| ||||||||
Sbjct 198 CACCGGCCGTCATT--C-ACGACACTTCCGAGACA-GACGAATCATACGGTGCGTGGAAC 253
Query 304 TTACGCGCTACCTTGGGAAAAAACGGGCGCGTGGGAGGATTGTCGCTGGCTTTCGAGGGC 363
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 254 TTACGCGCTACCTTGGGGAAAAACGGACGCGTGGGAGGATTGTCGCTGGCTTTCGAGGGC 313
Query 364 TCTTTGGTTGCTCCGCCGTCGTCTTCGCCGATGATAGTGCAGAAGATTCACGGCGGAGGA 423
||||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 314 TCTTTGGCCGCGCCGCCGTCGTCGTCGCCGATGATAGTGCAGAAGATCCACGGCGGAGGA 373
Query 424 GGTGAGGGAGAGGAAGA-CCGGAGAAAATTGGCGTCTTCGGCGCCGGTAAACGTACCGGA 482
||||||||||| ||| | |||| ||||||||||||| |||||||||||||||||||||||
Sbjct 374 GGTGAGGGAGAAGAA-ATCCGGCGAAAATTGGCGTCGTCGGCGCCGGTAAACGTACCGGA 432
Query 483 CTGGAGTAAGATATACCGAGTTGACTCGGTTGAGTCAATACACGAGTTAGACGACGAGGA 542
||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 433 CTGGAGTAAGATATACCGAGTGGACTCGGTTGAGTCAATACACGAGTTAGACGATGACGA 492
Query 543 TGACGAGGATGAGGAATCCGGGATGATGCCGCCGCATGAGTACCTTGCTAAGAGTCAAGC 602
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 493 TGAAGAGGATGAGGAATCCGGGATGATGCCGCCGCACGAGTACCTTGCTAAGAGTCAAGC 552
Query 603 ACGGCGGAGTAGAAAGATCGGAGGTGGTGG------TG-CG--TCGGTGTTTGACGGCGT 653
||||||||| || |||||||||||||| || || || ||||||||||| |||||
Sbjct 553 ACGGCGGAGCAGGAAGATCGGAGGTGGAGGCGGCGGTGGCGCGTCGGTGTTTGAAGGCGT 612
Query 654 CGGAAGGACTCTCAAAGGCAGAGAACTAAGGCGCGTTCGTGACGCGATTTGGAGCCAAAC 713
|||||||||||||||||||||||| ||||||||||| || || |||||||||||||||||
Sbjct 613 CGGAAGGACTCTCAAAGGCAGAGAGCTAAGGCGCGTCCGCGATGCGATTTGGAGCCAAAC 672
Query 714 AGGGTTCTACGGCTAAGTATAATTAACAAAACTaaaaaaaaaaaCATTTTAGATTTCAAT 773
||| |||||||||||||||||||||| ||| ||||| ||||||||||||||||
Sbjct 673 AGGCTTCTACGGCTAAGTATAATTAATAAA--TAAAA-------CATTTTAGATTTCAAT 723
Query 774 TAAAATTACTTGTTTTTGCCAGTATAGAAGTAATTTTTGTGATTATGCAAATTTTTAATT 833
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||
Sbjct 724 TAAAATTACTTGTTTTTGCCAGTATAGAAGTAATTTT-GTGATTATGCAA-TTTTT--TT 779
Query 834 TTGAGTTTTATTATGAACGAGACCAAAATTTCAAGTTCCTCGT 876
| || || ||||||| |||||||||||||||||||||
Sbjct 780 ---A-TT--AT---GAACGAGGCCAAAATTTCAAGTTCCTCGT 813
> Ahg471309 jgi|Araly1|471309|fgenesh2_kg.1__1263__AT1G11700.1
Length=798
Score = 342 bits (185), Expect = 2e-93
Identities = 500/642 (78%), Gaps = 62/642 (10%)
Strand=Plus/Plus
Query 118 ATGGCAAAAGGTCGAAAGCCGACGACAATGAACCGGAGCGATCGATACCTTGG-A--AGC 174
||||||| ||||||||||| |||| |||| || |||||| | ||||| || | |||
Sbjct 60 ATGGCAAGAGGTCGAAAGCTGACG---ATGAGCCAGAGCGAGAGGTACCTAGGAAGCAGC 116
Query 175 TACACTTACGGTGACAGTCACGGAAACTCCGTTACCGACGAATTAGAGCTC-GGTGAGGA 233
|||| ||||||||||||| ||||||||||||| |||||||||| ||||||| | |||||
Sbjct 117 TACAGTTACGGTGACAGTAACGGAAACTCCGTCACCGACGAATCAGAGCTCACG-GAGGA 175
Query 234 AGACATCTGGTCACCGGCCGTC-ATTCACGACGACACCACCGAGAATGAGGAATCCT-AC 291
||||||||||||| |||||| | |||| | | || | |||| | ||||| || ||
Sbjct 176 GGACATCTGGTCACATGCCGTCGA-TCAC-A-G---CC-CTGAGATTCTGGAAT-CTCAC 227
Query 292 GGCACGTGGAACTTACGCGCTACCT-TGG-GAAAAAACGGGCGCGT--G-GGAGGATTGT 346
||| |||||||| ||||| | || ||| | | || |||||||| | || || ||||
Sbjct 228 GGCGCGTGGAACACACGCGAT-GCTGTGGTG-AGGAATGGGCGCGTGGGTGGTGGTTTGT 285
Query 347 CGCTGGC-TTTCGAGGGCTCTTTGGTTGCTCCGCCGTCG-TC-TTCGCCGATGATA-GT- 401
||||||| ||| |||| | | | | || ||||| | || | | || | |||| ||
Sbjct 286 CGCTGGCGTTT-GAGGACGC-GT-CAT-CTTCGCCGAGGATCGTGCACC-A-GATACGTG 339
Query 402 GCAGAAGATTCACGGCGGAGGAGGT-GA--GGGA-GAGGAAGA-CCG-GAGAAAATTGGC 455
|| || || | || ||||| ||| || |||| |||||||| | ||| | |||||
Sbjct 340 GCGGAGGA--GAAGGAGGAGGCGGTGGAGGGGGAGGAGGAAGAGTTGAGAGGCAGTTGGC 397
Query 456 GTCTTCGGCGCCGGTAAACGTACCGGACTGGAGTAAGATATACCGAGTTGACTCGGTTGA 515
|| ||||||||||| ||||| ||||| ||||||||||||||| |||| ||||||||||
Sbjct 398 ATCGTCGGCGCCGGTGAACGTGCCGGATTGGAGTAAGATATACAGAGTCAACTCGGTTGA 457
Query 516 GTCAATACACGAGTTAGACGACGAGGATGACGAGGATGAGGAATCC-GG--GATGATGCC 572
||| ||||||||| | || ||||| || ||||| ||||| ||| || |||||||||
Sbjct 458 GTCGATACACGAG-T---CG--GAGGAAGAGGAGGAGGAGGATTCCAGGATGATGATGCC 511
Query 573 GCCGCATGAGTACCTTGCTAAGAGTCAAGCA-CGGCGGAGTAGAAAGATCGGAGGTGGTG 631
|||||||||||||| || |||| ||| | |||||||| ||||| ||| ||||| |
Sbjct 512 ACCGCATGAGTACCTAGCGCAGAGCCAA-AAGCGGCGGAGCAGAAA-ATC--TGGTGGCG 567
Query 632 GT-GCGTCGGTGTTTGACGGCGTCGGAAGGACTCTCAAAGGCA-GAGAACTAAGGCGCGT 689
|| || |||||||| || || || ||||| ||||||||||| | ||||| ||||||||||
Sbjct 568 GTGGC-TCGGTGTTCGAAGGAGTTGGAAGAACTCTCAAAGG-ACGAGAATTAAGGCGCGT 625
Query 690 TCGTGACGCGATTTGGAGCCAAACAGGGTTCTACGGCTAAGT 731
||| ||||||||||||||||||||||||||||||||||||||
Sbjct 626 TCGAGACGCGATTTGGAGCCAAACAGGGTTCTACGGCTAAGT 667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32442602367
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5