BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61940.1
Length=735
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924815 jgi|Araly1|924815|scaffold_200376.1 172 2e-42
> Ahg924815 jgi|Araly1|924815|scaffold_200376.1
Length=757
Score = 172 bits (93), Expect = 2e-42
Identities = 141/162 (87%), Gaps = 12/162 (7%)
Strand=Plus/Plus
Query 102 GAACTGGCGACAAATAT-TCAAAGAGATCGTTAACGTTCCTGAGGTTTCTAGCAAATTCA 160
||||||||||||||| | |||| ||||||||||| |||||||||||| ||||||||| |
Sbjct 146 GAACTGGCGACAAAT-TGTCAAGGAGATCGTTAAATTTCCTGAGGTTTTTAGCAAATTGA 204
Query 161 CTTTTCCAATCTCCTTGAAACA----GG----A--GGATCACTTGTTCAATGCTATGTTA 210
||||||| |||||| ||||||| || | |||||||||||||||||||||||||
Sbjct 205 CTTTTCCTATCTCCCTGAAACAGCCGGGTCCAAGGGGATCACTTGTTCAATGCTATGTTA 264
Query 211 AGAGAAACCGTAGCAATCAAACTTTCTATCTATACCTTGGAG 252
||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 265 AGAGAAACCGTAGCAGTCAAACTTTCTATCTATTCCTTGGAG 306
Score = 106 bits (57), Expect = 3e-22
Identities = 59/60 (98%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1 ATGCCTCCTGAGCTTCTGAGAGATGTTCTGATGAGGATAGAGCGATCCGAAGACACTTGG 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 87 ATGCCTCATGAGCTTCTGAGAGATGTTCTGATGAGGATAGAGCGATCCGAAGACACTTGG 146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27067271070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5