BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G61940.1 Length=735 Score E Sequences producing significant alignments: (Bits) Value Ahg924815 jgi|Araly1|924815|scaffold_200376.1 172 2e-42 > Ahg924815 jgi|Araly1|924815|scaffold_200376.1 Length=757 Score = 172 bits (93), Expect = 2e-42 Identities = 141/162 (87%), Gaps = 12/162 (7%) Strand=Plus/Plus Query 102 GAACTGGCGACAAATAT-TCAAAGAGATCGTTAACGTTCCTGAGGTTTCTAGCAAATTCA 160 ||||||||||||||| | |||| ||||||||||| |||||||||||| ||||||||| | Sbjct 146 GAACTGGCGACAAAT-TGTCAAGGAGATCGTTAAATTTCCTGAGGTTTTTAGCAAATTGA 204 Query 161 CTTTTCCAATCTCCTTGAAACA----GG----A--GGATCACTTGTTCAATGCTATGTTA 210 ||||||| |||||| ||||||| || | ||||||||||||||||||||||||| Sbjct 205 CTTTTCCTATCTCCCTGAAACAGCCGGGTCCAAGGGGATCACTTGTTCAATGCTATGTTA 264 Query 211 AGAGAAACCGTAGCAATCAAACTTTCTATCTATACCTTGGAG 252 ||||||||||||||| ||||||||||||||||| |||||||| Sbjct 265 AGAGAAACCGTAGCAGTCAAACTTTCTATCTATTCCTTGGAG 306 Score = 106 bits (57), Expect = 3e-22 Identities = 59/60 (98%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 1 ATGCCTCCTGAGCTTCTGAGAGATGTTCTGATGAGGATAGAGCGATCCGAAGACACTTGG 60 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 87 ATGCCTCATGAGCTTCTGAGAGATGTTCTGATGAGGATAGAGCGATCCGAAGACACTTGG 146 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27067271070 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5