BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61950.1
Length=1661
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907248 jgi|Araly1|907248|Al_scaffold_0002_329 2662 0.0
> Ahg907248 jgi|Araly1|907248|Al_scaffold_0002_329
Length=1662
Score = 2662 bits (1441), Expect = 0.0
Identities = 1589/1661 (96%), Gaps = 8/1661 (0%)
Strand=Plus/Plus
Query 1 ATGGGATGTCTCTGCATCAATCTGAAGAAGAAGGTCAAGAAACCAACACCAGACATCAGT 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
Sbjct 1 ATGGGATGTCTCTGCATCAATCTGAAGAAGAAGCTCAAGAAACCAACACCAGACAACAAT 60
Query 61 GGAGAACAAAACACAGAGGTAAAGAGCAGAGAAATAACACCAAAAGAACAACCTCGTCAA 120
||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 61 GGAGAACAAAACACAAAGGTACGGAGCAGAGAAATAACACCAAAACAACAACCTCGTCAA 120
Query 121 AGACAACCAGCTCCAAGAGCCAAGTTCCAGATTGTGGTGCAACCTCATAAACTCCCACTT 180
|||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 121 AGACAATCAGCTCCAAGAGCCAATTTCCAGATTGTGGTGCAACCTCATAAACTTCCACTT 180
Query 181 CCACTTCCT-CAGCCTCAAGAAAAACAAAAGCTGATCAATCATCAAAAACAGAGCACCCT 239
||| || | |||| |||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 181 CCAATT-ATACAGCATCAAGAAAAACAAAAGCTAATCAATCATCAAAAACAGAGCAGCCT 239
Query 240 GCAACAACCAGAACCGATCTTAGGGAGACCATTTGAAGATATTAAGGAGAAGTATAGTCT 299
|||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||
Sbjct 240 GCAACAACCAGAACCGATCTTAGGGAAACCATTTGAAGACATTAAGGAGAAGTACAGTCT 299
Query 300 TGGTCGCGAATTAGGTCGTGGCCAATTCGGTATAACGTATATATGTACAGAGATTTCATC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 CGGTCGCGAATTAGGTCGTGGCCAATTCGGTATAACGTATATATGTACAGAGATCTCATC 359
Query 360 AGGCAAGAACTTTGCTTGTAAATCCATCTTGAAGAGAAAGCTCATCAGAACTAAGGACAG 419
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 360 AGGCAAGAACTTTGCTTGTAAATCCATCTTGAAGAGAAAACTCATCAGAACTCAGGACAG 419
Query 420 AGAGGATGTAAGAAGGGAGATACAGATAATGCACTACTTATCAGGACAACCAAACATTGT 479
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 420 AGAGGATGTAAGAAGGGAGATACAGATAATGCACTACTTATCAGGACAACCGAACATTGT 479
Query 480 GGAAATCAAAGGAGCTTATGAAGACAGACAAAGTGTTCATCTTGTAATGGAGCTTTGCGA 539
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GGAGATCAAAGGAGCTTATGAAGACAGACAAAGTGTTCATCTTGTAATGGAGCTTTGCGA 539
Query 540 AGGCGGTGAGCTTTTTGATAAGATCACTAAACGAGGACATTACTCAGAGAAAGCAGCCGC 599
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGGCGGCGAGCTTTTTGATAAGATCACTAAACGAGGACATTACTCAGAGAAAGCAGCCGC 599
Query 600 GGAGATCATTAGAAGTGTGGTTAAAGTTGTACAGATTTGTCATTTCATGGGTGTGATTCA 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AGAGATCATTAGAAGTGTGGTTAAAGTTGTACAGATTTGTCATTTCATGGGTGTGATTCA 659
Query 660 TCGCGACCTTAAACCCGAAAACTTCTTGTTGTCCAGTAAAGATGAAGCTTCCTCAATGCT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCGCGACCTTAAACCCGAAAACTTCTTGTTGTCCAGTAAAGATGAAGCTTCCTCAATGCT 719
Query 720 CAAGGCTACTGATTTTGGTGTTTCAGTTTTCATCGAAGAAGGGAAAGTGTATGAAGACAT 779
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 720 CAAGGCTACTGATTTTGGTGTTTCAGTTTTCATCGAAGAAGGGAGAGTGTATGAAGACAT 779
Query 780 TGTTGGAAGTGCATATTACGTTGCACCGGAGGTTCTGAAGAGAAACTACGGCAAAGCAAT 839
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 780 TGTTGGAAGTGCATATTACGTTGCACCAGAGGTTCTGAAGAGAAACTACGGCAAAGCAAT 839
Query 840 CGATATTTGGAGCGCCGGAGTTATTCTCTACATCCTTCTCTGCGGAAATCCTCCATTTTG 899
||||||||||||||| ||||| ||||||||||||||||||||||| | |||||| |||||
Sbjct 840 CGATATTTGGAGCGCTGGAGTCATTCTCTACATCCTTCTCTGCGGCACTCCTCCGTTTTG 899
Query 900 GGCAGAGACTGATAAGGGAATATTTGAGGAGATTTTGAGAGGAGAGATTGATTTTGAGTC 959
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 900 GGCCGAGACTGATAAGGGAATATTTGAGGAGGTTTTGAGAGGAGAGATTGATTTTGAGTC 959
Query 960 GGAACCATGGCCGTCGATTTCGGAGAGTGCTAAGGATTTGGTGAGAAACATGTTAAAGTA 1019
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 960 AGAACCATGGCCGTCGATTTCAGAGAGTGCTAAGGATTTGGTGAGGAACATGTTAAAGTA 1019
Query 1020 TGATCCCAAGAAACGGTTTACTGCGGCTCAAGTCCTAG--AA----CATCCTTGGATACG 1073
|||||||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 1020 TGATCCCAAGAAACGGTTTACTGCGGCTCAAGTCCTAGGTAAAGAACATCCGTGGATACG 1079
Query 1074 AGAAGGTGGAGAAGCTTCTGATAAACCAATCGATAGTGCTGTTTTGTCGCGGATGAAGCA 1133
||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 1080 AGAAGGTGGCGAAGCTTCTGATAAGCCAATCGATAGCGCGGTTTTGTCGCGGATGAAGCA 1139
Query 1134 ACTCCGAGCTATGAATAAGCTTAAGAAGCTTGCATTTAAATTTATCGCGCAAAATCTCAA 1193
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1140 ACTCCGAGCTATGAATAAGCTTAAGAAGCTTGCATTGAAGTTTATCGCGCAAAATCTCAA 1199
Query 1194 AGAAGAGGAACTAAAGGGTCTCAAGACAATGTTCGCAAACATGGATACCGATAAGAGCGG 1253
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1200 AGAAGAGGAACTAAAGGGTCTCAAGACAATGTTCGCAAACATGGATACTGATAAGAGCGG 1259
Query 1254 TACAATCACTTACGACGAATTGAAATCCGGACTGGAAAAACTCGGTTCGAGGTTAACCGA 1313
||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1260 TACAATCACCTACGAGGAATTGAAAACCGGACTGGAAAAACTCGGTTCGAGGTTAACCGA 1319
Query 1314 AACCGAAGTTAAGCAGCTCTTGGAAGATGCTGATGTCGATGGGAACGGTACTATTGATTA 1373
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1320 AACCGAAGTTAAGCAGCTCTTGGAAGATGCTGATGTCGATGGGAACGGTACGATTGATTA 1379
Query 1374 CATTGAGTTCATTTCAGCTACTATGAACCGGTTCAGAGTAGAAAGAGAGGATAATTTGTT 1433
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1380 CATTGAGTTCATTTCAGCTACTATGAACCGGTTCAGAGTAGAAAGAGAGGAGAATTTGTT 1439
Query 1434 CAAAGCTTTTCAACATTTCGATAAAGATAACAGCGGGTTTATTTCGAGACAAGAATTAGA 1493
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1440 CAAAGCATTTCAACATTTCGATAAAGATAATAGCGGGTTTATTTCGAGACAAGAATTAGA 1499
Query 1494 AACAGCTATGAAAGAGTATAATATGGGAGATGATATTATGATCAAAGAGATTATCTCAGA 1553
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1500 AACAGCAATGAAAGAGTATAATATGGGAGATGATACCATGATCAAAGAGATTATCTCAGA 1559
Query 1554 AGTTGATGCTGATAATGATGGAAGTATAAATTATCAAGAGTTTTGCAATATGATGAAGAG 1613
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1560 AGTTGATGCTGATAACGATGGAAGTATTAATTATCAAGAGTTTTGCAATATGATGAGGAG 1619
Query 1614 CTGCTCACAATCACACCAATCAAAATTGGTTCAACCGAATT 1654
||||||| ||||||| ||| |||||||||||| ||| ||||
Sbjct 1620 CTGCTCAAAATCACATCAAACAAAATTGGTTCCACCCAATT 1660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62277550575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5