BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G61950.1 Length=1661 Score E Sequences producing significant alignments: (Bits) Value Ahg907248 jgi|Araly1|907248|Al_scaffold_0002_329 2662 0.0 > Ahg907248 jgi|Araly1|907248|Al_scaffold_0002_329 Length=1662 Score = 2662 bits (1441), Expect = 0.0 Identities = 1589/1661 (96%), Gaps = 8/1661 (0%) Strand=Plus/Plus Query 1 ATGGGATGTCTCTGCATCAATCTGAAGAAGAAGGTCAAGAAACCAACACCAGACATCAGT 60 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || | Sbjct 1 ATGGGATGTCTCTGCATCAATCTGAAGAAGAAGCTCAAGAAACCAACACCAGACAACAAT 60 Query 61 GGAGAACAAAACACAGAGGTAAAGAGCAGAGAAATAACACCAAAAGAACAACCTCGTCAA 120 ||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||| Sbjct 61 GGAGAACAAAACACAAAGGTACGGAGCAGAGAAATAACACCAAAACAACAACCTCGTCAA 120 Query 121 AGACAACCAGCTCCAAGAGCCAAGTTCCAGATTGTGGTGCAACCTCATAAACTCCCACTT 180 |||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 121 AGACAATCAGCTCCAAGAGCCAATTTCCAGATTGTGGTGCAACCTCATAAACTTCCACTT 180 Query 181 CCACTTCCT-CAGCCTCAAGAAAAACAAAAGCTGATCAATCATCAAAAACAGAGCACCCT 239 ||| || | |||| |||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 181 CCAATT-ATACAGCATCAAGAAAAACAAAAGCTAATCAATCATCAAAAACAGAGCAGCCT 239 Query 240 GCAACAACCAGAACCGATCTTAGGGAGACCATTTGAAGATATTAAGGAGAAGTATAGTCT 299 |||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||| Sbjct 240 GCAACAACCAGAACCGATCTTAGGGAAACCATTTGAAGACATTAAGGAGAAGTACAGTCT 299 Query 300 TGGTCGCGAATTAGGTCGTGGCCAATTCGGTATAACGTATATATGTACAGAGATTTCATC 359 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 300 CGGTCGCGAATTAGGTCGTGGCCAATTCGGTATAACGTATATATGTACAGAGATCTCATC 359 Query 360 AGGCAAGAACTTTGCTTGTAAATCCATCTTGAAGAGAAAGCTCATCAGAACTAAGGACAG 419 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 360 AGGCAAGAACTTTGCTTGTAAATCCATCTTGAAGAGAAAACTCATCAGAACTCAGGACAG 419 Query 420 AGAGGATGTAAGAAGGGAGATACAGATAATGCACTACTTATCAGGACAACCAAACATTGT 479 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 420 AGAGGATGTAAGAAGGGAGATACAGATAATGCACTACTTATCAGGACAACCGAACATTGT 479 Query 480 GGAAATCAAAGGAGCTTATGAAGACAGACAAAGTGTTCATCTTGTAATGGAGCTTTGCGA 539 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 GGAGATCAAAGGAGCTTATGAAGACAGACAAAGTGTTCATCTTGTAATGGAGCTTTGCGA 539 Query 540 AGGCGGTGAGCTTTTTGATAAGATCACTAAACGAGGACATTACTCAGAGAAAGCAGCCGC 599 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 AGGCGGCGAGCTTTTTGATAAGATCACTAAACGAGGACATTACTCAGAGAAAGCAGCCGC 599 Query 600 GGAGATCATTAGAAGTGTGGTTAAAGTTGTACAGATTTGTCATTTCATGGGTGTGATTCA 659 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 AGAGATCATTAGAAGTGTGGTTAAAGTTGTACAGATTTGTCATTTCATGGGTGTGATTCA 659 Query 660 TCGCGACCTTAAACCCGAAAACTTCTTGTTGTCCAGTAAAGATGAAGCTTCCTCAATGCT 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 TCGCGACCTTAAACCCGAAAACTTCTTGTTGTCCAGTAAAGATGAAGCTTCCTCAATGCT 719 Query 720 CAAGGCTACTGATTTTGGTGTTTCAGTTTTCATCGAAGAAGGGAAAGTGTATGAAGACAT 779 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 720 CAAGGCTACTGATTTTGGTGTTTCAGTTTTCATCGAAGAAGGGAGAGTGTATGAAGACAT 779 Query 780 TGTTGGAAGTGCATATTACGTTGCACCGGAGGTTCTGAAGAGAAACTACGGCAAAGCAAT 839 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 780 TGTTGGAAGTGCATATTACGTTGCACCAGAGGTTCTGAAGAGAAACTACGGCAAAGCAAT 839 Query 840 CGATATTTGGAGCGCCGGAGTTATTCTCTACATCCTTCTCTGCGGAAATCCTCCATTTTG 899 ||||||||||||||| ||||| ||||||||||||||||||||||| | |||||| ||||| Sbjct 840 CGATATTTGGAGCGCTGGAGTCATTCTCTACATCCTTCTCTGCGGCACTCCTCCGTTTTG 899 Query 900 GGCAGAGACTGATAAGGGAATATTTGAGGAGATTTTGAGAGGAGAGATTGATTTTGAGTC 959 ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 900 GGCCGAGACTGATAAGGGAATATTTGAGGAGGTTTTGAGAGGAGAGATTGATTTTGAGTC 959 Query 960 GGAACCATGGCCGTCGATTTCGGAGAGTGCTAAGGATTTGGTGAGAAACATGTTAAAGTA 1019 |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 960 AGAACCATGGCCGTCGATTTCAGAGAGTGCTAAGGATTTGGTGAGGAACATGTTAAAGTA 1019 Query 1020 TGATCCCAAGAAACGGTTTACTGCGGCTCAAGTCCTAG--AA----CATCCTTGGATACG 1073 |||||||||||||||||||||||||||||||||||||| || ||||| |||||||| Sbjct 1020 TGATCCCAAGAAACGGTTTACTGCGGCTCAAGTCCTAGGTAAAGAACATCCGTGGATACG 1079 Query 1074 AGAAGGTGGAGAAGCTTCTGATAAACCAATCGATAGTGCTGTTTTGTCGCGGATGAAGCA 1133 ||||||||| |||||||||||||| ||||||||||| || |||||||||||||||||||| Sbjct 1080 AGAAGGTGGCGAAGCTTCTGATAAGCCAATCGATAGCGCGGTTTTGTCGCGGATGAAGCA 1139 Query 1134 ACTCCGAGCTATGAATAAGCTTAAGAAGCTTGCATTTAAATTTATCGCGCAAAATCTCAA 1193 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 1140 ACTCCGAGCTATGAATAAGCTTAAGAAGCTTGCATTGAAGTTTATCGCGCAAAATCTCAA 1199 Query 1194 AGAAGAGGAACTAAAGGGTCTCAAGACAATGTTCGCAAACATGGATACCGATAAGAGCGG 1253 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1200 AGAAGAGGAACTAAAGGGTCTCAAGACAATGTTCGCAAACATGGATACTGATAAGAGCGG 1259 Query 1254 TACAATCACTTACGACGAATTGAAATCCGGACTGGAAAAACTCGGTTCGAGGTTAACCGA 1313 ||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1260 TACAATCACCTACGAGGAATTGAAAACCGGACTGGAAAAACTCGGTTCGAGGTTAACCGA 1319 Query 1314 AACCGAAGTTAAGCAGCTCTTGGAAGATGCTGATGTCGATGGGAACGGTACTATTGATTA 1373 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1320 AACCGAAGTTAAGCAGCTCTTGGAAGATGCTGATGTCGATGGGAACGGTACGATTGATTA 1379 Query 1374 CATTGAGTTCATTTCAGCTACTATGAACCGGTTCAGAGTAGAAAGAGAGGATAATTTGTT 1433 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1380 CATTGAGTTCATTTCAGCTACTATGAACCGGTTCAGAGTAGAAAGAGAGGAGAATTTGTT 1439 Query 1434 CAAAGCTTTTCAACATTTCGATAAAGATAACAGCGGGTTTATTTCGAGACAAGAATTAGA 1493 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1440 CAAAGCATTTCAACATTTCGATAAAGATAATAGCGGGTTTATTTCGAGACAAGAATTAGA 1499 Query 1494 AACAGCTATGAAAGAGTATAATATGGGAGATGATATTATGATCAAAGAGATTATCTCAGA 1553 |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1500 AACAGCAATGAAAGAGTATAATATGGGAGATGATACCATGATCAAAGAGATTATCTCAGA 1559 Query 1554 AGTTGATGCTGATAATGATGGAAGTATAAATTATCAAGAGTTTTGCAATATGATGAAGAG 1613 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 1560 AGTTGATGCTGATAACGATGGAAGTATTAATTATCAAGAGTTTTGCAATATGATGAGGAG 1619 Query 1614 CTGCTCACAATCACACCAATCAAAATTGGTTCAACCGAATT 1654 ||||||| ||||||| ||| |||||||||||| ||| |||| Sbjct 1620 CTGCTCAAAATCACATCAAACAAAATTGGTTCCACCCAATT 1660 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62277550575 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5