BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G62030.1 Length=2349 Score E Sequences producing significant alignments: (Bits) Value Ahg338169 jgi|Araly1|338169|fgenesh1_pg.C_scaffold_2000268 1199 0.0 > Ahg338169 jgi|Araly1|338169|fgenesh1_pg.C_scaffold_2000268 Length=1095 Score = 1199 bits (649), Expect = 0.0 Identities = 764/821 (93%), Gaps = 2/821 (0%) Strand=Plus/Plus Query 59 ATGGATTTTGAGGGGGAGGTCATATCAGCCATTTCTCAACTAATCTCTATCGACGACCCT 118 |||| ||| || |||||||||||||||||||||||||||||||| ||||| || |||||| Sbjct 1 ATGGCTTTGGAAGGGGAGGTCATATCAGCCATTTCTCAACTAATATCTATGGATGACCCT 60 Query 119 TGGGAAGTGGATAATGGGGATGCGAATACGGAGATCATTGCACGCGTTATTGAGATAAGC 178 ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 61 TGGGAAGTGGATAATGGGGATGCGAATACGGAGATCATTGCACGCATTATTGAAATAAGC 120 Query 179 TACGTTAGTAACACATTCTGCGAATATGCTATGTTACTAACGCAGCAGAAGGCGGAGTCG 238 || ||||||| | ||||||||||||| ||||||||||||| ||||||| || |||||||| Sbjct 121 TATGTTAGTAGCGCATTCTGCGAATACGCTATGTTACTAATGCAGCAGCAGCCGGAGTCG 180 Query 239 GAGCTCATGTTACTTATTACTCAAACCATATCTTTCTACAACTCTATGGATTTGGATTCC 298 |||||||||||||| |||||||||||||| ||| ||||| |||||||||||||||||||| Sbjct 181 GAGCTCATGTTACTCATTACTCAAACCATCTCTATCTACGACTCTATGGATTTGGATTCC 240 Query 299 CAGCCGGAGCCGCTAAGGAAGCTCATATCATTTATCGCTAAAAAAGCAGATCTCGACTAC 358 ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||| Sbjct 241 CAGCCGGAGCCGCTAAGAAAACTCATATCATTCATCGCTAAAAAAGCAGATCTCGACTAC 300 Query 359 TATGTTGATCCCTTGTTGGAGCAGGATTTGGAGGTCTTGCCACTCTTTGGTAAAACATTA 418 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 301 TATGTTGATCCCTTGTTGGACCAGGATTTGGAGGTCTTGCCACTCTTTGGTAAAACATTA 360 Query 419 AGTCTTGAGCCAGAGCCAGAGCTTATATCACTCATCCGTAAAATAGTCTCCCTCGTCATC 478 ||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||| || Sbjct 361 AGTCTTGCGCCAGAGCCAGAGCTCATATCACTCATCCGTCAAATAGTCTCCCTCGTCGTC 420 Query 479 TCTATGGATCCAAAGTGGAAGAAACTTATTTCCTTATGTCCTCAAGTAGCCGTAAGATTG 538 ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||| Sbjct 421 TCTATGGATCCAAAGTGGAAGAAGCTTATTTCCTTATGCCCTCAAGTAGCAGTAAGATTG 480 Query 539 GAAAATGGTATATTACACGTGGATGAAGAATTCGTGTGGGAAACCAATGACAAGTGGTGT 598 ||||| || | ||||| ||||||||||||||| ||||||||||||||||||| |||||| Sbjct 481 GAAAAAGGAAAATTACTTGTGGATGAAGAATTCTTGTGGGAAACCAATGACAAATGGTGT 540 Query 599 TGTTTCCCTTTATTCTGGCTGAAGTTCAGGTCACCAGAACAAGA-TGCTACCCATTTTTT 657 |||||||||||||||||||||||||| | |||| ||| | |||| | |||| |||||||| Sbjct 541 TGTTTCCCTTTATTCTGGCTGAAGTTTATGTCAACAGGAGAAGACT-CTACACATTTTTT 599 Query 658 CTGCCGAGGTTGCAACGGCAAGAACCATAACGAAAACAACAAGGCTCCAGTTGAGATCAA 717 ||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||| Sbjct 600 CTGCCGAGGTTGCAATGGCAAGAACCATAATGAAAACAACAAGGCTCAAGTTGAGATCAA 659 Query 718 ACACCCTCTTCATCCAAGACATTCTCTTCGGCTTGCTTTGTTGCGAAAGTCTAATGAAAC 777 ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct 660 ACACCCTCTTCATCCAAGACATTCTCTTCGGCTTGCTTTGTTGCGGAAGTCTCATGAAAC 719 Query 778 GAGGCAGTGCTATTGTTGTGATGTAAGTCTTCAAGAGATATTTTATTATTGCTCAGCTTG 837 |||||| |||||||||||||||| || ||| |||||| |||||||||||||||||||||| Sbjct 720 GAGGCAATGCTATTGTTGTGATGAAAATCTCCAAGAGCTATTTTATTATTGCTCAGCTTG 779 Query 838 CGACTATGCTATGAACATAGCTTGTGTGGAGAAACCTCCGG 878 ||||||||||||||| |||||||||||||||||||| |||| Sbjct 780 CGACTATGCTATGAATATAGCTTGTGTGGAGAAACCACCGG 820 Score = 429 bits (232), Expect = 4e-119 Identities = 262/277 (95%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 2014 GGATTTATACGTGAAGCCTGGTTCATCTTGGATAAGCTTCTCCTTCAATGGAGAGAAGAT 2073 ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 819 GGACTTATACGTGAAGCCTGGTTCATCTTGGATAAGCTTCTCCTTCAATGGAGCGAAGAT 878 Query 2074 ATATGTTCGGGCCAACGATCATCATATGACTCGACCTATTTGCTCTCATTGCAAGAAGCG 2133 | |||||| | ||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 879 AAATGTTCAGCCCAACAATCATCATATGACTCGACCTTTTTGCTCTCATTGCAAGAAGCG 938 Query 2134 TTGTCCACACAAAATAGTTTTGGAGTCGTCTGGTTCAAAATTTTGTTCCACATCTTGTGT 2193 ||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||| Sbjct 939 TTGTCCACACAAAATTGTTCTGGAGTCATCTGGTTCAAAATTTTGTTCCACATCTTGTGT 998 Query 2194 TGGTTATTTTTTGTCTACAAAGGTGAACACAGCTGGTCATCGCGAATATCTACAACGGAG 2253 |||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 999 TGGTGAATTTTTGTCTACAAAGGTGAACACAGCTGGTCATCGTGAATATCTACAACGGAG 1058 Query 2254 AGGCTACGGAAATTATGAGTTCTCAGCACTGACGTAG 2290 |||||||||||||||||||||||||||| |||| ||| Sbjct 1059 AGGCTACGGAAATTATGAGTTCTCAGCATTGACATAG 1095 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88483639135 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5