BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62030.1
Length=2349
Score E
Sequences producing significant alignments: (Bits) Value
Ahg338169 jgi|Araly1|338169|fgenesh1_pg.C_scaffold_2000268 1199 0.0
> Ahg338169 jgi|Araly1|338169|fgenesh1_pg.C_scaffold_2000268
Length=1095
Score = 1199 bits (649), Expect = 0.0
Identities = 764/821 (93%), Gaps = 2/821 (0%)
Strand=Plus/Plus
Query 59 ATGGATTTTGAGGGGGAGGTCATATCAGCCATTTCTCAACTAATCTCTATCGACGACCCT 118
|||| ||| || |||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 1 ATGGCTTTGGAAGGGGAGGTCATATCAGCCATTTCTCAACTAATATCTATGGATGACCCT 60
Query 119 TGGGAAGTGGATAATGGGGATGCGAATACGGAGATCATTGCACGCGTTATTGAGATAAGC 178
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 61 TGGGAAGTGGATAATGGGGATGCGAATACGGAGATCATTGCACGCATTATTGAAATAAGC 120
Query 179 TACGTTAGTAACACATTCTGCGAATATGCTATGTTACTAACGCAGCAGAAGGCGGAGTCG 238
|| ||||||| | ||||||||||||| ||||||||||||| ||||||| || ||||||||
Sbjct 121 TATGTTAGTAGCGCATTCTGCGAATACGCTATGTTACTAATGCAGCAGCAGCCGGAGTCG 180
Query 239 GAGCTCATGTTACTTATTACTCAAACCATATCTTTCTACAACTCTATGGATTTGGATTCC 298
|||||||||||||| |||||||||||||| ||| ||||| ||||||||||||||||||||
Sbjct 181 GAGCTCATGTTACTCATTACTCAAACCATCTCTATCTACGACTCTATGGATTTGGATTCC 240
Query 299 CAGCCGGAGCCGCTAAGGAAGCTCATATCATTTATCGCTAAAAAAGCAGATCTCGACTAC 358
||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 241 CAGCCGGAGCCGCTAAGAAAACTCATATCATTCATCGCTAAAAAAGCAGATCTCGACTAC 300
Query 359 TATGTTGATCCCTTGTTGGAGCAGGATTTGGAGGTCTTGCCACTCTTTGGTAAAACATTA 418
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 TATGTTGATCCCTTGTTGGACCAGGATTTGGAGGTCTTGCCACTCTTTGGTAAAACATTA 360
Query 419 AGTCTTGAGCCAGAGCCAGAGCTTATATCACTCATCCGTAAAATAGTCTCCCTCGTCATC 478
||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||| ||
Sbjct 361 AGTCTTGCGCCAGAGCCAGAGCTCATATCACTCATCCGTCAAATAGTCTCCCTCGTCGTC 420
Query 479 TCTATGGATCCAAAGTGGAAGAAACTTATTTCCTTATGTCCTCAAGTAGCCGTAAGATTG 538
||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 421 TCTATGGATCCAAAGTGGAAGAAGCTTATTTCCTTATGCCCTCAAGTAGCAGTAAGATTG 480
Query 539 GAAAATGGTATATTACACGTGGATGAAGAATTCGTGTGGGAAACCAATGACAAGTGGTGT 598
||||| || | ||||| ||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 481 GAAAAAGGAAAATTACTTGTGGATGAAGAATTCTTGTGGGAAACCAATGACAAATGGTGT 540
Query 599 TGTTTCCCTTTATTCTGGCTGAAGTTCAGGTCACCAGAACAAGA-TGCTACCCATTTTTT 657
|||||||||||||||||||||||||| | |||| ||| | |||| | |||| ||||||||
Sbjct 541 TGTTTCCCTTTATTCTGGCTGAAGTTTATGTCAACAGGAGAAGACT-CTACACATTTTTT 599
Query 658 CTGCCGAGGTTGCAACGGCAAGAACCATAACGAAAACAACAAGGCTCCAGTTGAGATCAA 717
||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 600 CTGCCGAGGTTGCAATGGCAAGAACCATAATGAAAACAACAAGGCTCAAGTTGAGATCAA 659
Query 718 ACACCCTCTTCATCCAAGACATTCTCTTCGGCTTGCTTTGTTGCGAAAGTCTAATGAAAC 777
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 660 ACACCCTCTTCATCCAAGACATTCTCTTCGGCTTGCTTTGTTGCGGAAGTCTCATGAAAC 719
Query 778 GAGGCAGTGCTATTGTTGTGATGTAAGTCTTCAAGAGATATTTTATTATTGCTCAGCTTG 837
|||||| |||||||||||||||| || ||| |||||| ||||||||||||||||||||||
Sbjct 720 GAGGCAATGCTATTGTTGTGATGAAAATCTCCAAGAGCTATTTTATTATTGCTCAGCTTG 779
Query 838 CGACTATGCTATGAACATAGCTTGTGTGGAGAAACCTCCGG 878
||||||||||||||| |||||||||||||||||||| ||||
Sbjct 780 CGACTATGCTATGAATATAGCTTGTGTGGAGAAACCACCGG 820
Score = 429 bits (232), Expect = 4e-119
Identities = 262/277 (95%), Gaps = 0/277 (0%)
Strand=Plus/Plus
Query 2014 GGATTTATACGTGAAGCCTGGTTCATCTTGGATAAGCTTCTCCTTCAATGGAGAGAAGAT 2073
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 819 GGACTTATACGTGAAGCCTGGTTCATCTTGGATAAGCTTCTCCTTCAATGGAGCGAAGAT 878
Query 2074 ATATGTTCGGGCCAACGATCATCATATGACTCGACCTATTTGCTCTCATTGCAAGAAGCG 2133
| |||||| | ||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 879 AAATGTTCAGCCCAACAATCATCATATGACTCGACCTTTTTGCTCTCATTGCAAGAAGCG 938
Query 2134 TTGTCCACACAAAATAGTTTTGGAGTCGTCTGGTTCAAAATTTTGTTCCACATCTTGTGT 2193
||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 939 TTGTCCACACAAAATTGTTCTGGAGTCATCTGGTTCAAAATTTTGTTCCACATCTTGTGT 998
Query 2194 TGGTTATTTTTTGTCTACAAAGGTGAACACAGCTGGTCATCGCGAATATCTACAACGGAG 2253
|||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 999 TGGTGAATTTTTGTCTACAAAGGTGAACACAGCTGGTCATCGTGAATATCTACAACGGAG 1058
Query 2254 AGGCTACGGAAATTATGAGTTCTCAGCACTGACGTAG 2290
|||||||||||||||||||||||||||| |||| |||
Sbjct 1059 AGGCTACGGAAATTATGAGTTCTCAGCATTGACATAG 1095
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88483639135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5